def compile(self,
extra_pathnames=[],
executable_name=None,
debug=False,
optimisation=None):
env = get_env_file()
mkdir(self.builddir)
compile_flags = []
# if debug:
# compile_flags.append('-g')
# compile_flags.append('-traceback')
# compile_flags.append('-debug all')
# if optimisation is not None:
# compile_flags.append('-O%d' % optimisation)
compile_flags.extend(self.compile_flags)
compile_flags_str = ' '.join(compile_flags)
# get path_names from the directory
if not self.path_names:
self.path_names = self.read_path_names(
P(self.srcdir, 'extra', 'model', self.name, 'path_names'))
# wykang: add extra path_names
if extra_pathnames:
self.path_names = extra_pathnames + self.path_names
self.write_path_names(self.path_names)
path_names_str = P(self.builddir, 'path_names')
# wykang: use different excutable_name
if executable_name:
self.executable_name = executable_name
vars = {
'execdir': self.builddir,
'template_dir': self.templatedir,
'srcdir': self.srcdir,
'workdir': self.workdir,
'compile_flags': compile_flags_str,
'env_source': env,
'path_names': path_names_str,
'executable_name': self.executable_name,
'debug': debug
}
self.templates.get_template('compile.sh').stream(**vars).dump(
P(self.builddir, 'compile.sh'))
self.log.info('Running compiler')
for line in sh.bash(P(self.builddir, 'compile.sh'),
_iter=True,
_err_to_out=True):
self._log_line(line)
self.log.info('Compilation complete.')
def __init__(self,
name,
codebase,
safe_mode=False,
workbase=GFDL_WORK,
database=GFDL_DATA):
super(Experiment, self).__init__()
self.name = name
self.codebase = codebase
self.safe_mode = safe_mode
# set the default locations of working directory,
# executable directory, restart file storage, and
# output data directory.
self.workdir = P(workbase, 'experiment', self.name)
self.rundir = P(
self.workdir,
'run') # temporary area an individual run will be performed
self.datadir = P(
database,
self.name) # where run data will be moved to upon completion
self.restartdir = P(self.datadir,
'restarts') # where restarts will be stored
self.template_dir = P(_module_directory, 'templates')
self.env_source = get_env_file()
self.templates = Environment(
loader=FileSystemLoader(self.template_dir))
self.diag_table = DiagTable()
self.field_table_file = P(self.codebase.srcdir, 'extra', 'model',
self.codebase.name, 'field_table')
self.inputfiles = []
self.namelist = Namelist()