def outputs(self) -> List[ToolOutput]:
return [
ToolOutput("out",
DataTypeWithSecondary(),
glob=InputSelector("inp"))
]
def outputs(self) -> List[ToolOutput]:
return [
ToolOutput("out", FastqGzPair, glob=WildcardSelector("*.fastq.gz"))
]
def outputs(self) -> List[ToolOutput]:
return [ToolOutput("out", Stdout)]
from janis_core import (
CommandToolBuilder,
ToolInput,
ToolOutput,
File,
InputSelector,
String,
ToolArgument,
)
ToolWithOptionalOutput = CommandToolBuilder(
tool="optional_output_tool",
version="v0.1.0",
container="ubuntu:latest",
base_command=[],
arguments=[ToolArgument("echo 1 > ", shell_quote=False)],
inputs=[
ToolInput("outputFilename",
String(optional=True),
default="out.csv",
position=1)
],
outputs=[
ToolOutput("out",
File(optional=True),
selector=InputSelector("outputFilename"))
],
)
def outputs(self):
return [
ToolOutput("out",
CompressedVcf,
glob=InputSelector("outputFilename"))
]
def outputs(self):
return [ToolOutput("out", Tsv(), glob=InputSelector("outputFilename"))]