def java_utf8_message_dispatcher(buffer):
byte_array = [buffer.get_byte(i) for i in range(buffer.length)]
byteArrayInputStream = ByteArrayInputStream(byte_array)
dataInputStream = DataInputStream(byteArrayInputStream)
while dataInputStream.available() > 0:
try:
yield dataInputStream.readUTF()
except:
pass
def runURL(url, args=[], callback=None, callbackOnErr=False):
inp = DataInputStream(URL(url).openStream());
contents = [];
try:
holder = inp.readByte()
while holder != None:
contents += [holder]
holder = inp.readByte()
except EOFException:
pass
except Exception as e:
print str(e)
return out(2, None, [], str(e).split("\n"))
return run(contents, args, callback, callbackOnErr)
def run(self):
print "connect to GS"
sgs = Socket("127.0.0.1", 9011)
i = DataInputStream(sgs.getInputStream())
print "connect to GeoEditor"
sge = Socket("127.0.0.1", 2109)
# o = DataOutputStream(sge.getOutputStream())
o = sge.getOutputStream()
Thread.sleep(5000)
GeoEditorListener.getInstance().getThread().addListener(self.vpl)
print "gsge Ready"
bufsize = 4096
lastpos = 0
buf = String("\0" * bufsize).getBytes()
fc = 0
while True:
if not i.available():
Thread.sleep(10)
fc += 1
if fc % 500 == 0:
o.flush()
fc = 0
continue
lastpos += i.read(buf, lastpos, bufsize - lastpos)
while lastpos > 0 and lastpos > buf[0]:
if buf[1] == 2:
pass
elif buf[1] == 1:
x = self.list2num(buf[2:6])
y = self.list2num(buf[6:10])
z = self.list2num(buf[10:12])
if z > -15000:
rx, ry = GeoUtil.getRegionXY(x, y)
if (rx, ry) == (22, 22):
bx, by = GeoUtil.getBlockXY(x, y)
cx, cy = GeoUtil.getCellXY(x, y)
o.write(struct.pack(">BBBBh", bx, by, cx, cy, z))
newpos = buf[0] + 1
if len(buf) - newpos < bufsize:
buf = buf[newpos:] + String("\0" * bufsize).getBytes()
else:
buf = buf[newpos:]
lastpos -= newpos
def run(self):
print "connect to GS"
sgs = Socket("127.0.0.1", 9011)
i = DataInputStream(sgs.getInputStream())
print "connect to GeoEditor"
sge = Socket("127.0.0.1", 2109)
#o = DataOutputStream(sge.getOutputStream())
o = sge.getOutputStream()
Thread.sleep(5000)
GeoEditorListener.getInstance().getThread().addListener(self.vpl)
print "gsge Ready"
bufsize = 4096
lastpos = 0
buf = String("\0" * bufsize).getBytes()
fc = 0
while True:
if not i.available():
Thread.sleep(10)
fc += 1
if fc % 500 == 0:
o.flush()
fc = 0
continue
lastpos += i.read(buf, lastpos, bufsize - lastpos)
while lastpos > 0 and lastpos > buf[0]:
if buf[1] == 2:
pass
elif buf[1] == 1:
x = self.list2num(buf[2:6])
y = self.list2num(buf[6:10])
z = self.list2num(buf[10:12])
if z > -15000:
rx, ry = GeoUtil.getRegionXY(x, y)
if (rx, ry) == (22, 22):
bx, by = GeoUtil.getBlockXY(x, y)
cx, cy = GeoUtil.getCellXY(x, y)
o.write(struct.pack('>BBBBh', bx, by, cx, cy, z))
newpos = buf[0] + 1
if len(buf) - newpos < bufsize:
buf = buf[newpos:] + String("\0" * bufsize).getBytes()
else:
buf = buf[newpos:]
lastpos -= newpos
def readScalarDataFile(self, scalarfile):
scalarData = []
for j in range(2):
scalerData.append(range(9))
fis = FileInputStream(self.scalarList[i])
dis = DataInputStream(fis)
scalerBytes = jarray.zeros(18 * 4, 'b')
dis.read(scalerBytes, 0, 18 * 4)
fis.close()
offset = 0
for j in range(2):
for l in range(0, 36, 4):
scalarData[j][
l / 4] = (0x000000FF & scalerBytes[offset + l + 0]) + (
(0x000000FF & scalerBytes[offset + l + 1]) << 8
) + ((0x000000FF & scalerBytes[offset + l + 2]) << 16) + (
(0x000000FF & scalerBytes[offset + l + 3]) << 24)
offset = offset + 36
fis.close()
return scalarData
def loadModelStateFromWaypoint(startingDir, excitePath, lastExciteValue):
wpPath = startingDir + excitePath + str(lastExciteValue) + "_wp.txt"
Main.getRootModel().getWayPoints().setAttachedFileName(wpPath)
waypointFile = Main.getRootModel().getWayPoints().getAttachedFile()
dis = DataInputStream(FileInputStream(waypointFile))
dis.readInt()
dis.readDouble()
cs = Main.getRootModel().createState()
cs.readBinary(dis)
dis.readDouble()
cs = Main.getRootModel().createState()
cs.readBinary(dis)
Main.getRootModel().setState(cs)
Main.getRootModel().rerender()
def onNext(self, iterator):
if (iterator.hasTop()):
mapping = {}
key = iterator.getTopKey()
cf = key.getColumnFamily()
if cf != "f":
while (iterator.hasTop() and "f" != key.getColumnFamily()):
iterator.next()
key = iterator.getTopKey()
if not iterator.hasTop():
return None
value = iterator.getTopValue()
size = "0"
if value.getSize() > 0:
bs = ByteArrayInputStream(value.get())
ds = DataInputStream(bs)
size = Long(WritableUtils.readVLong(ds)).toString()
newval = Value(size)
kv = KeyValue(key, newval)
iterator.next()
return kv
else:
return None
def writeKScanSummary(self, npoints, start, end, step, edgeEnergy, twoD,
kStartTime, kEndTime, kWeighting):
self.writeDetectorFile(npoints)
current = start
# lets window this mofo
fid = open(self.datafilename, 'a')
current = start
for i in range(npoints):
windowedData = [0.0] * 9
print 'Reading and windowing:', self.mcaList[i]
frameData = Xspress2Utilities.interpretDataFile(
self.mcaList[i].strip(), 0)
totalw = 0.0
for j in range(9):
sumgrades = frameData[j]
windowedData[j] = windowedData[j] + self.windowData(
sumgrades, self.windowValues[j][0],
self.windowValues[j][1])
for j in range(9):
totalw = totalw + windowedData[j]
#
# now read scalar data
#
scalarData = []
for j in range(2):
scalarData.append(range(9))
fis = FileInputStream(self.scalarList[i])
dis = DataInputStream(fis)
scalerBytes = jarray.zeros(18 * 4, 'b')
dis.read(scalerBytes, 0, 18 * 4)
fis.close()
offset = 0
for j in range(2):
for l in range(0, 36, 4):
scalarData[j][l / 4] = (
0x000000FF & scalerBytes[offset + l + 0]
) + ((0x000000FF & scalerBytes[offset + l + 1]) << 8) + (
(0x000000FF & scalerBytes[offset + l + 2]) << 16) + (
(0x000000FF & scalerBytes[offset + l + 3]) << 24)
offset = offset + 36
secTime = self.timeForK(current, start, end, kWeighting, kEndTime,
kStartTime)
liveTime = secTime / 1000.0
corrCounts = self.getCorrectedCounts(scalarData[0], scalarData[1],
liveTime)
measuredCounts = scalarData[0]
relinCounts = self.reLinearizeCounts(corrCounts)
factor = []
for j in range(len(relinCounts)):
if (relinCounts[j] == 0 or measuredCounts[j] == 0):
val = 1
factor.append(1.0)
else:
val = (relinCounts[j] / measuredCounts[j])
factor.append(val * liveTime)
correctWindows = []
corrWindTot = 0.0
for j in range(9):
correctW = float(windowedData[j]) * factor[j]
corrWindTot = corrWindTot + correctW
correctWindows.append(correctW)
#print>>fid,self.mDegForK(current,edgeEnergy,twoD),comboDCM.calcEnergy(self.mDegForK(current,edgeEnergy,twoD)/1000.0),\
# secTime,self.ionchamberData[i][0],self.ionchamberData[i][1],self.ionchamberData[i][2],str(windowedData[0:]).strip('[]').replace(',',''), \
# totalw,str(correctWindows[0:]).strip('[]').replace(',',''),corrWindTot
print>>fid,self.mDegForK(current,edgeEnergy,twoD),comboDCM.calcEnergy(self.mDegForK(current,edgeEnergy,twoD)/1000.0),\
secTime,self.ionchamberData[i][0],self.ionchamberData[i][1],self.ionchamberData[i][2],str(windowedData[0:]).strip('[]').replace(',',''), \
totalw,str(correctWindows[0:]).strip('[]').replace(',',''),corrWindTot
current = current + step
# SDP Stuff
detectorVector = Vector()
detectorVector.add(self.ionchamberData[i])
detectorVector.add(windowedData[0:])
positionVector = Vector()
positionVector.add(str(self.mDegForK(current, edgeEnergy, twoD)))
#sdp = ScanDataPoint("scan name",self.scannableNamesVector,self.detectorNamesVector,positionVector,detectorVector,"Panel Name","I18 Custom SDP","Header String",self.datafilename)
sdp = ScanDataPoint("Exafs FluKScan", self.scannableNamesVector,
self.detectorNamesVector, None, None, None,
None, positionVector, detectorVector, None,
"Panel Name", "I18 Custom SDP",
"Header String", self.datafilename, 0)
self.controller.update(None, sdp)
self.mcontroller.update(None, sdp)
fid.close()
from java.net import Socket
from java.io import DataInputStream, DataOutputStream
import sys
import jline
from traceback import print_exc
if len(sys.argv) < 3:
print "You need to specify the host and port, in that order, to"
print "connect to."
sys.exit()
print "Connecting..."
socket = Socket(sys.argv[1], int(sys.argv[2]))
print "Connected! One moment..."
in_stream = DataInputStream(socket.getInputStream())
out_stream = DataOutputStream(socket.getOutputStream())
try:
while not socket.isClosed():
mode = in_stream.readShort()
if mode == 2: # normal text write
sys.stdout.write(in_stream.readUTF())
sys.stdout.flush()
elif mode == 3: # raw_input with prompt
result = raw_input(in_stream.readUTF())
out_stream.writeUTF(result);
out_stream.flush()
elif mode == 4: # Exiting
break
else:
from java.io import DataInputStream as DI from java.io import DataOutputStream as DO a = str(10) b = str(20) di = DI(a) do = DO(b) c = di.read() do.write(c) print(a,b,c)
