def __init__(self, frame, chart, pingFun):
JDialog(frame)
self.setTitle('Chart Settings')
self.setModal(True)
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
pane.setLayout(GridLayout(7, 2))
pane.add(JLabel('Marker color'))
self.markerPanel = self.createColorPanel(chart.markerColor, pane)
pane.add(JLabel('Positive selection color'))
self.posPanel = self.createColorPanel(chart.posColor, pane)
pane.add(JLabel('Neutral color'))
self.neuPanel = self.createColorPanel(chart.neuColor, pane)
pane.add(JLabel('Balancing selection color '))
self.balPanel = self.createColorPanel(chart.balColor, pane)
self.add(JLabel('Label candidate selected loci'))
self.selLabel = JCheckBox()
self.selLabel.setSelected(chart.labelSelected)
self.add(self.selLabel)
self.add(JLabel('Label candidate neutral loci'))
self.neuLabel = JCheckBox()
self.neuLabel.setSelected(chart.labelNeutral)
self.add(self.neuLabel)
change = JButton('Change')
change.setActionCommand('Change')
change.addActionListener(self)
pane.add(change)
exit = JButton('Exit')
exit.setActionCommand('Exit')
exit.addActionListener(self)
pane.add(exit)
self.pack()
def __init__(self, frame, what, entries, pingFun):
JDialog(frame, what)
self.frame = frame
self.entries = entries
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
self.ent_pane, self.ent_list, self.ent = self.createList(entries)
pane.add(self.ent_pane, BorderLayout.WEST)
actionPanel = JPanel()
actionPanel.setLayout(GridLayout(20, 1))
self.text = JTextField(20)
actionPanel.add(self.text)
change = JButton('Change')
change.setActionCommand('Change')
change.addActionListener(self)
actionPanel.add(change)
actionPanel.add(JLabel(''))
quit = JButton('Exit')
quit.setActionCommand('Exit')
quit.addActionListener(self)
actionPanel.add(quit)
actionPanel.add(JLabel(''))
pane.add(actionPanel, BorderLayout.CENTER)
self.pack()
def word_corrections(event):
words_string = ""
for word in self.word_classifier.words:
words_string = words_string + word.upper() + "\n"
text = "The words that can be corrected are:\n\n" + words_string
dialog = JOptionPane(text, JOptionPane.INFORMATION_MESSAGE)
dialog_wrapper = JDialog(self, "Available Words", False)
dialog_wrapper.setContentPane(dialog)
dialog_wrapper.pack()
dialog_wrapper.setVisible(True)
def makeDialog(self, event):
cmd = event.getActionCommand()
isModal = (cmd == 'Modal')
dialog = JDialog(
self.frame, # Try None as owner...
# None, # owner
title='%d: %s' % (self.boxNum, cmd),
modal=isModal,
size=(200, 100),
locationRelativeTo=self.frame)
self.boxNum += 1
dialog.add(JLabel(cmd))
dialog.setVisible(1)
def start(self):
self.frame = JDialog()
#self.frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE)
self.frame.setLocation(0, 1500)
self.frame.setSize(1000, 200)
self.tableDataModel = DefaultTableModel([], [
"URL", "Code", "Content-Length", "Location", "Mutated Id",
"Orig Id"
])
self.jtable = JTable(self.tableDataModel)
scrollPane = JScrollPane(self.jtable)
self.jtable.setFillsViewportHeight(True)
messageEditorOrig = self.callbacks.createMessageEditor(None, False)
messageEditorModified = self.callbacks.createMessageEditor(
None, False)
self.editorSplitPane = JSplitPane(JSplitPane.HORIZONTAL_SPLIT,
messageEditorOrig.getComponent(),
messageEditorModified.getComponent())
self.editorSplitPane.setResizeWeight(0.5)
splitPane = JSplitPane(JSplitPane.VERTICAL_SPLIT, scrollPane,
self.editorSplitPane)
splitPane.setResizeWeight(0.5)
class TableSelector(ListSelectionListener):
def __init__(self, plugin):
self.plugin = plugin
def valueChanged(self, event):
if not event.getValueIsAdjusting():
selectedRowIndex = self.plugin.jtable.getSelectedRows()[0]
self.plugin._rowSelected(selectedRowIndex)
self.jtable.getSelectionModel().addListSelectionListener(
TableSelector(self))
self.frame.add(splitPane)
self.frame.setVisible(True)
self.callbacks.registerHttpListener(self)
self.callbacks.setExtensionName("Custom Plugin")
return
def valueChanged(self, event):
if not event.getValueIsAdjusting():
table = self.table
row = table.getSelectedRow()
if row > -1:
method = table.getModel().getValueAt(row, 0)
title = '%s.help( "%s" )' % (self.objName, method)
text = self.WASobj.help(method)
text = JTextArea(text, 20, 80, font=monoFont)
dialog = JDialog(
None, # owner
title, # title
1, # modal = true
layout=BorderLayout(),
locationRelativeTo=None)
dialog.add(JScrollPane(text), BorderLayout.CENTER)
dialog.pack()
dialog.setVisible(1)
def popup( self, event ) :
self.dialog = dialog = JDialog(
self.frame,
'Name prompt',
1,
layout = GridLayout( 0, 2 ),
locationRelativeTo = self.frame
)
dialog.add( JLabel( "What's your name?" ) )
self.text = dialog.add(
JTextField(
10,
actionPerformed = self.enter
)
)
self.result = None
dialog.pack()
dialog.setVisible( 1 )
self.label.setText( 'Name = "%s"' % self.result )
def __showModal(params=None):
from javax.swing import JDialog
windowName = 'GWFileBrowser'
if windowName in system.gui.getWindowNames():
window = system.nav.openWindowInstance(windowName, params)
system.nav.centerWindow(window)
rc = window.getRootContainer()
#rc.load()
cp = window.getContentPane()
window.setVisible(False)
dlg = JDialog(None, True)
dlg.setContentPane(cp)
dlg.setSize(window.getWidth(), window.getHeight())
dlg.setMinimumSize(window.getMinimumSize())
dlg.setMaximumSize(window.getMaximumSize())
dlg.setLocation(window.getX(), window.getY())
#dlg.setLocationRelativeTo(None)
dlg.setTitle(window.getTitle())
dlg.setVisible(True)
system.nav.closeWindow(window)
return rc.Result
return None
def __init__(self, frame, chart, lociNames, pv, ci, confLines, locusFst,
isDominant, fdr):
JDialog(frame)
self.chart = chart
self.frame = frame
self.confLines = confLines
self.isDominant = isDominant
self.fdr = fdr
pane = self.getRootPane().getContentPane()
pane.setLayout(BorderLayout())
self.initTable(lociNames, pv, ci, locusFst)
scrollPane = JScrollPane(self.table)
osName = System.getProperty('os.name').lower()
if not System.getProperty('java.specification.version')[-1] == '5':
self.table.setFillsViewportHeight(True)
pane.add(scrollPane, BorderLayout.CENTER)
buttonPane = JPanel()
sll = JButton('Save loci list')
sll.addActionListener(self)
sll.setActionCommand('SLL')
buttonPane.add(sll)
sci = JButton('Save confidence intervals')
sci.addActionListener(self)
sci.setActionCommand('SCI')
buttonPane.add(sci)
close = JButton('Close')
close.addActionListener(self)
close.setActionCommand('Close')
buttonPane.add(close)
pane.add(buttonPane, BorderLayout.PAGE_END)
self.pack()
def show_detectable_objects_dialog(self, e):
parentComponent = SwingUtilities.windowForComponent(self.panel0)
self.detectable_obejcts_dialog = JDialog(
parentComponent, "List of Objects to Detect",
ModalityType.APPLICATION_MODAL)
panel = JPanel()
self.detectable_obejcts_dialog.add(panel)
gbPanel = GridBagLayout()
gbcPanel = GridBagConstraints()
panel.setLayout(gbPanel)
y = 0
x = 0
for line in self.local_settings.getClassesOfInterest():
if y > 15:
y = 0
x = x + 1
class_check_box = JCheckBox(line['name'])
self.classes_of_interest_checkboxes.append(class_check_box)
class_check_box.setEnabled(True)
class_check_box.setSelected(line['enabled'])
class_check_box.addItemListener(self.on_class_checkbox_clicked)
gbcPanel.gridx = x
gbcPanel.gridy = y
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 1
gbcPanel.weighty = 1
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(class_check_box, gbcPanel)
panel.add(class_check_box)
y = y + 1
blank_1_L = JLabel(" ")
blank_1_L.setEnabled(True)
gbcPanel.gridx = 0
gbcPanel.gridy = y + 1
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 1
gbcPanel.weighty = 0
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(blank_1_L, gbcPanel)
panel.add(blank_1_L)
deselect_all_button = JButton("Deselect all")
deselect_all_button.setEnabled(True)
deselect_all_button.addActionListener(self.on_deselect_all_clicked)
gbcPanel.gridx = 1
gbcPanel.gridy = y + 2
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 2
gbcPanel.weighty = 1
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(deselect_all_button, gbcPanel)
panel.add(deselect_all_button)
select_all_button = JButton("Select all")
select_all_button.setEnabled(True)
select_all_button.addActionListener(self.on_select_all_clicked)
gbcPanel.gridx = 3
gbcPanel.gridy = y + 2
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 2
gbcPanel.weighty = 1
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(select_all_button, gbcPanel)
panel.add(select_all_button)
blank_2_L = JLabel(" ")
blank_2_L.setEnabled(True)
gbcPanel.gridx = 0
gbcPanel.gridy = y + 3
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 1
gbcPanel.weighty = 0
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(blank_2_L, gbcPanel)
panel.add(blank_2_L)
cancel_button = JButton("Cancel")
cancel_button.setEnabled(True)
cancel_button.addActionListener(
self.on_cancel_classes_of_interest_click)
gbcPanel.gridx = 1
gbcPanel.gridy = y + 4
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 2
gbcPanel.weighty = 1
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(cancel_button, gbcPanel)
panel.add(cancel_button)
save_button = JButton("Save")
save_button.setEnabled(True)
save_button.addActionListener(self.on_save_classes_of_interest_click)
gbcPanel.gridx = 3
gbcPanel.gridy = y + 4
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 2
gbcPanel.weighty = 1
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(save_button, gbcPanel)
panel.add(save_button)
blank_3_L = JLabel(" ")
blank_3_L.setEnabled(True)
gbcPanel.gridx = 0
gbcPanel.gridy = y + 5
gbcPanel.gridwidth = 1
gbcPanel.gridheight = 1
gbcPanel.fill = GridBagConstraints.BOTH
gbcPanel.weightx = 1
gbcPanel.weighty = 0
gbcPanel.anchor = GridBagConstraints.NORTH
gbPanel.setConstraints(blank_3_L, gbcPanel)
panel.add(blank_3_L)
self.detectable_obejcts_dialog.pack()
screenSize = Toolkit.getDefaultToolkit().getScreenSize()
self.detectable_obejcts_dialog.setLocation(
int((screenSize.getWidth() / 2) -
(self.detectable_obejcts_dialog.getWidth() / 2)),
int((screenSize.getHeight() / 2) -
(self.detectable_obejcts_dialog.getHeight() / 2)))
self.detectable_obejcts_dialog.setVisible(True)
