class StatusPanel(JPanel):
def __init__(self):
JPanel()
self.setLayout(GridLayout(1, 1))
#self.add(JLabel('SELWB 1.0'))
self.statusLabel = JLabel('Idle', SwingConstants.CENTER)
self.statusLabel.setBackground(Color.GREEN)
self.statusLabel.setOpaque(True)
self.add(self.statusLabel)
def setStatus(self, str, bgColor=Color.GREEN):
self.statusLabel.setText(str)
self.statusLabel.setBackground(bgColor)
class StatusPanel(JPanel):
def __init__(self):
JPanel()
self.setLayout(GridLayout(1,1))
#self.add(JLabel('SELWB 1.0'))
self.statusLabel = JLabel('Idle', SwingConstants.CENTER)
self.statusLabel.setBackground(Color.GREEN)
self.statusLabel.setOpaque(True)
self.add(self.statusLabel)
def setStatus(self, str, bgColor = Color.GREEN):
self.statusLabel.setText(str)
self.statusLabel.setBackground(bgColor)
def run(self):
frame = JFrame('BlueLabel') # Create a JFrame with a title
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE)
Label = JLabel() # Create an empty label
Label.setOpaque(1) # Must be opaque for color to be seen
Label.setBackground(Color.BLUE) # Make the label blue
Label.setPreferredSize(Dimension(200, 200))
frame.getContentPane().add(Label) # Add the label to the content pane
frame.pack() # Size frame to display the contents
frame.setVisible(1) # Finally, make the frame visible
def getTableCellRendererComponent(self, table, text, isSelected, hasFocus,
row, column):
comp = JLabel(text)
comp.setOpaque(True) #MUST do this for background to show up.
comp.setBackground(self.color[row])
return comp
class SourceCellRenderer(TreeCellRenderer):
def __init__(self,tree,mapContext):
self.tree = tree
self.mapContext = mapContext
## Group
self.lblFolder = JLabel()
self.lblFolder.setBackground(Color(222,227,233)) #.BLUE.brighter())
self.lblFolder.setOpaque(True)
self.lblFolder.setText("plddddddddddddddddddddddddddddddddddddddddddddddddddddddd")
### Folder
self.pnlFolder = JPanel()
self.pnlFolder.setOpaque(False)
self.pnlFolder.setLayout(FlowLayout(FlowLayout.LEFT))
self.lblGroup = JLabel()
#self.lblGroup.setBackground(Color(222,227,233)) #.BLUE.brighter())
#self.lblGroup.setOpaque(True)
self.lblGroup.setText("plddddddddddddddddddddddddddddddddddddddddddddddddddddddd")
self.lblGroupPreferredSize = self.lblGroup.getPreferredSize()
self.lblGroupIcon = JLabel()
self.pnlFolder.add(self.lblGroupIcon)
self.pnlFolder.add(self.lblGroup)
#self.lblGroup.setBorder(
# BorderFactory.createLineBorder(Color(222,227,233).darker(),1)
#)
#self.lblGroupPreferredSize.setSize(30,200)#self.lblGroupPreferredSize.getHeight()+4, self.lblGroupPreferredSize.getWidth())
### LAYER
self.pnlLayer = JPanel()
self.pnlLayer.setOpaque(False)
#self.pnlLayer.setBorder(EmptyBorder(2,2,2,2))
self.pnlLayer.setLayout(FlowLayout(FlowLayout.LEFT))
self.chkLayerVisibility = JCheckBox()
self.chkLayerVisibility.setOpaque(False)
self.pnlLayer.add(self.chkLayerVisibility)
self.lblLayerIcon = JLabel()
self.lblLayerName = JLabel()
self.pnlLayer.add(self.lblLayerIcon)
self.pnlLayer.add(self.lblLayerName)
#self.tree.setRowHeight(int(self.pnlLayer.getPreferredSize().getHeight())) #+2
self.tree.setRowHeight(int(self.pnlFolder.getPreferredSize().getHeight()))
self.lblUnknown = JLabel()
def getTreeCellRendererComponent(self, tree, value, selected, expanded, leaf, row, hasFocus):
uo = value.getUserObject()
if isinstance(uo, DataFolder):
#self.lblFolder.setText(uo.getName())
text = "[" + str(value.getChildCount()) +"] " + uo.getName()
self.lblFolder.setText(text)
self.lblFolder.setPreferredSize(self.lblGroupPreferredSize)
if uo.getIcon()!=None:
self.lblGroupIcon.setIcon(uo.getIcon())
else:
self.lblGroupIcon.setIcon(getIconByName("librarybrowser-folder")) #icon-folder-open"))
return self.lblFolder
if isinstance(uo, DataGroup):
self.lblGroup.setText(uo.getName())
self.lblGroup.setPreferredSize(self.lblGroupPreferredSize)
if uo.getIcon()!=None:
self.lblGroupIcon.setIcon(uo.getIcon())
else:
#import pdb
#pdb.set_trace()
self.lblGroupIcon.setIcon(getIconByName("librarybrowser-folder")) #icon-folder-open"))
return self.pnlFolder
if isinstance(uo, DataLayer):
layer = uo.getLayer()
self.lblLayerName.setText(layer.getName())
self.lblLayerIcon.setIcon(getIconFromLayer(layer))
self.chkLayerVisibility.setSelected(layer.isVisible())
if layer.isWithinScale(self.mapContext.getScaleView()): # and layer.isVisible():
self.chkLayerVisibility.setEnabled(True)
else:
self.chkLayerVisibility.setEnabled(False)
self.lblLayerName.setForeground(Color.BLACK)
font = self.lblLayerName.getFont()
self.lblLayerName.setForeground(Color.BLACK)
if layer.isEditing():
self.lblLayerName.setForeground(Color.RED)
if layer.isActive() and font.isBold():
pass
elif layer.isActive() and not font.isBold():
newfont = font.deriveFont(Font.BOLD)
self.lblLayerName.setFont(newfont)
else:
newfont = font.deriveFont(Font.PLAIN)
self.lblLayerName.setFont(newfont)
#self.pnlLayer.repaint()
return self.pnlLayer
self.lblUnknown.setText("")
self.lblUnknown.setPreferredSize(Dimension(0,0))
return self.lblUnknown
class StackOverlay:
def __init__(self):
self.frame = None
self.overlayColorPreviewLabel = None
self.showStackOverlayWindow()
self.overlayColor = None
def onQuit(self, e):
print "Exiting..."
self.frame.dispose()
def showColorChooser(self, e):
colorChooser = JColorChooser()
self.overlayColor = colorChooser.showDialog(self.frame, "Choose color", Color.red)
self.overlayColorPreviewLabel.setBackground(self.overlayColor)
def showStackOverlayWindow(self):
all = JPanel()
all.setLayout(MigLayout())
self.imageIDs = WindowManager.getIDList()
self.imageNames = []
if self.imageIDs is None:
IJ.error("No open images", "Stack Overlay requires at least one image to be already open.")
return
for i in self.imageIDs:
self.imageNames.append(WindowManager.getImage(i).getTitle())
self.baseImageBox = JComboBox(self.imageNames)
baseImageBoxLabel = JLabel("Base image")
self.baseImageBox.setSelectedIndex(0)
all.add(baseImageBoxLabel)
all.add(self.baseImageBox, "wrap")
self.overlayImageBox = JComboBox(self.imageNames)
overlayImageBoxLabel = JLabel("Overlay image")
if len(self.imageNames) > 1:
self.overlayImageBox.setSelectedIndex(1)
all.add(overlayImageBoxLabel)
all.add(self.overlayImageBox, "wrap")
all.add(JSeparator(SwingConstants.HORIZONTAL), "span, wrap")
overlayStyleFrame = JPanel()
overlayStyleFrame.setLayout(MigLayout())
overlayStyleFrame.setBorder(BorderFactory.createCompoundBorder(BorderFactory.createTitledBorder("Overlay Style"), BorderFactory.createEmptyBorder(5,5,5,5)))
colorLabel = JLabel("Overlay color")
self.overlayColorPreviewLabel = JLabel(" ")
self.overlayColorPreviewLabel.setBorder(BorderFactory.createEmptyBorder(0,0,1,0))
self.overlayColorPreviewLabel.setOpaque(True)
self.overlayColorPreviewLabel.setBackground(Color.red)
self.overlayColor = Color.red
colorPicker = JColorChooser()
colorPicker.setPreviewPanel(self.overlayColorPreviewLabel)
colorButton = JButton("Select color...", actionPerformed=self.showColorChooser)
opacityLabel = JLabel("Overlay opacity (%)")
opacitySpinnerModel = SpinnerNumberModel(100, 0, 100, 1)
self.opacitySpinner = JSpinner(opacitySpinnerModel)
overlayStyleFrame.add(colorLabel)
overlayStyleFrame.add(self.overlayColorPreviewLabel)
overlayStyleFrame.add(colorButton, "wrap")
overlayStyleFrame.add(opacityLabel)
overlayStyleFrame.add(self.opacitySpinner, "wrap")
all.add(overlayStyleFrame, "span, wrap")
self.virtualStackCheckbox = JCheckBox("Use Virtual Stack", True)
all.add(self.virtualStackCheckbox, "span, wrap")
# TODO: add non-thermonuclear cancel button functionality
overlayCancelButton = JButton("Cancel", actionPerformed=self.onQuit)
overlayStartButton = JButton("Overlay images", actionPerformed=self.overlayImages)
all.add(overlayCancelButton, "gapleft push")
all.add(overlayStartButton, "gapleft push")
self.frame = JFrame("Stack Overlay")
self.frame.getContentPane().add(JScrollPane(all))
self.frame.pack()
self.frame.setLocationRelativeTo(None)
self.frame.setVisible(True)
def overlayImages(self, e):
impBase = WindowManager.getImage(self.imageIDs[self.baseImageBox.getSelectedIndex()])
refBase = impBase.getStack().getProcessor(1)
impOverlay = WindowManager.getImage(self.imageIDs[self.overlayImageBox.getSelectedIndex()])
refOverlay = impOverlay.getStack().getProcessor(1)
print "Overlaying for stack sizes " + str(impBase.getStackSize()) + "/" + str(impOverlay.getStackSize()) + "..."
stack = None
if self.virtualStackCheckbox.isSelected():
stack = OverlayVirtualStack()
stack.overlayOpacity = float(self.opacitySpinner.getValue())/100.0
stack.overlayColor = AWTColorToArray(self.overlayColorPreviewLabel.getBackground())
stack.base = impBase
stack.overlay = impOverlay
ImagePlus("Stack Overlay from " + self.imageNames[self.baseImageBox.getSelectedIndex()] + " and " + self.imageNames[self.overlayImageBox.getSelectedIndex()], stack).show()
else:
IJ.error("Not implemented yet", "Using normal stacks is not implemented yet. Please use the Virtual Stack option.")
class SelectionCellRenderer(TreeCellRenderer):
def __init__(self, tree, mapContext):
self.tree = tree
self.mapContext = mapContext
self.lblGroup = JLabel()
self.lblGroup.setBackground(Color(222, 227, 233)) #.BLUE.brighter())
self.lblGroup.setOpaque(True)
self.lblGroup.setText(
"plddddddddddddddddddddddddddddddddddddddddddddddddddddddd")
self.lblGroupPreferredSize = self.lblGroup.getPreferredSize()
#h = self.lblGroupPreferredSize.getHeight()
#w = self.lblGroupPreferredSize.getWidth()
#self.lblGroupPreferredSize.setSize(h, w)
self.pnlLayer = JPanel()
self.pnlLayer.setOpaque(False)
self.pnlLayer.setLayout(FlowLayout(FlowLayout.LEFT))
self.lblClean = JLabel()
self.chkLayerVisibility = JCheckBox()
self.chkLayerVisibility.setOpaque(False)
self.lblLayerName = JLabel()
self.lblLayerIcon = JLabel()
self.lblFeatureSelecteds = JLabel()
self.pnlLayer.add(self.chkLayerVisibility)
self.pnlLayer.add(self.lblClean)
self.pnlLayer.add(self.lblFeatureSelecteds)
self.pnlLayer.add(self.lblLayerIcon)
self.pnlLayer.add(self.lblLayerName)
self.tree.setRowHeight(
int(self.pnlLayer.getPreferredSize().getHeight()) - 3)
self.lblUnknown = JLabel()
## Feature
self.lblFeatureIcon = JLabel()
self.lblFeatureName = JLabel()
i18n = ToolsLocator.getI18nManager()
self.lblFeatureName.setText(i18n.getTranslation("_Feature"))
self.pnlFeature = JPanel()
self.pnlFeature.setOpaque(False)
self.pnlFeature.setLayout(FlowLayout(FlowLayout.LEFT))
self.pnlFeature.add(self.lblFeatureIcon)
self.pnlFeature.add(self.lblFeatureName)
def getTreeCellRendererComponent(self, tree, value, selected, expanded,
leaf, row, hasFocus):
uo = value.getUserObject()
if isinstance(uo, DataGroup):
text = "[" + str(value.getChildCount()) + "] " + uo.getName()
self.lblGroup.setText(text)
self.lblGroup.setPreferredSize(self.lblGroupPreferredSize)
return self.lblGroup
if isinstance(uo, DataLayer):
layer = uo.getLayer()
self.lblLayerName.setText(uo.getName())
self.lblLayerIcon.setIcon(getIconFromLayer(layer))
if layer.isVisible():
self.lblLayerName.setEnabled(True)
else:
self.lblLayerName.setEnabled(False)
self.lblClean.setIcon(getIconByName("edit-clear"))
self.chkLayerVisibility.setSelected(layer.isVisible())
if layer.isWithinScale(
self.mapContext.getScaleView()): # and layer.isVisible():
self.chkLayerVisibility.setEnabled(True)
else:
self.chkLayerVisibility.setEnabled(False)
if layer.getDataStore() != None and layer.getDataStore(
).getSelection() != None and layer.getDataStore().getSelection(
).getSize() != 0: # and layer.isVisible():
self.lblClean.setEnabled(True)
self.lblFeatureSelecteds.setText(
str(layer.getDataStore().getSelection().getSize()))
self.lblFeatureSelecteds.setEnabled(True)
else:
self.lblClean.setEnabled(False)
self.lblFeatureSelecteds.setText("0")
self.lblFeatureSelecteds.setEnabled(False)
font = self.lblLayerName.getFont()
self.lblLayerName.setForeground(Color.BLACK)
if layer.isEditing():
self.lblLayerName.setForeground(Color.RED)
#if layer.isActive():
if layer.isActive(): # and not font.isBold():
newfont = font.deriveFont(Font.BOLD)
self.lblLayerName.setFont(newfont)
else:
newfont = font.deriveFont(Font.PLAIN)
self.lblLayerName.setFont(newfont)
return self.pnlLayer
if isinstance(uo, FeatureDataLayerNode):
self.lblFeatureName.setText(uo.getFeature().toString())
self.lblFeatureIcon.setIcon(getIconByName("edit-clear"))
return self.pnlFeature
self.lblUnknown.setText("")
self.lblUnknown.setPreferredSize(Dimension(0, 0))
return self.lblUnknown
def getTableCellRendererComponent(
self, table, text, isSelected, hasFocus, row, column):
comp = JLabel(text)
comp.setOpaque(True) #MUST do this for background to show up.
comp.setBackground(self.color[row])
return comp
class StackOverlay:
def __init__(self):
self.frame = None
self.overlayColorPreviewLabel = None
self.showStackOverlayWindow()
self.overlayColor = None
def onQuit(self, e):
print "Exiting..."
self.frame.dispose()
def showColorChooser(self, e):
colorChooser = JColorChooser()
self.overlayColor = colorChooser.showDialog(self.frame, "Choose color",
Color.red)
self.overlayColorPreviewLabel.setBackground(self.overlayColor)
def showStackOverlayWindow(self):
all = JPanel()
all.setLayout(MigLayout())
self.imageIDs = WindowManager.getIDList()
self.imageNames = []
if self.imageIDs is None:
IJ.error(
"No open images",
"Stack Overlay requires at least one image to be already open."
)
return
for i in self.imageIDs:
self.imageNames.append(WindowManager.getImage(i).getTitle())
self.baseImageBox = JComboBox(self.imageNames)
baseImageBoxLabel = JLabel("Base image")
self.baseImageBox.setSelectedIndex(0)
all.add(baseImageBoxLabel)
all.add(self.baseImageBox, "wrap")
self.overlayImageBox = JComboBox(self.imageNames)
overlayImageBoxLabel = JLabel("Overlay image")
if len(self.imageNames) > 1:
self.overlayImageBox.setSelectedIndex(1)
all.add(overlayImageBoxLabel)
all.add(self.overlayImageBox, "wrap")
all.add(JSeparator(SwingConstants.HORIZONTAL), "span, wrap")
overlayStyleFrame = JPanel()
overlayStyleFrame.setLayout(MigLayout())
overlayStyleFrame.setBorder(
BorderFactory.createCompoundBorder(
BorderFactory.createTitledBorder("Overlay Style"),
BorderFactory.createEmptyBorder(5, 5, 5, 5)))
colorLabel = JLabel("Overlay color")
self.overlayColorPreviewLabel = JLabel(" ")
self.overlayColorPreviewLabel.setBorder(
BorderFactory.createEmptyBorder(0, 0, 1, 0))
self.overlayColorPreviewLabel.setOpaque(True)
self.overlayColorPreviewLabel.setBackground(Color.red)
self.overlayColor = Color.red
colorPicker = JColorChooser()
colorPicker.setPreviewPanel(self.overlayColorPreviewLabel)
colorButton = JButton("Select color...",
actionPerformed=self.showColorChooser)
opacityLabel = JLabel("Overlay opacity (%)")
opacitySpinnerModel = SpinnerNumberModel(100, 0, 100, 1)
self.opacitySpinner = JSpinner(opacitySpinnerModel)
overlayStyleFrame.add(colorLabel)
overlayStyleFrame.add(self.overlayColorPreviewLabel)
overlayStyleFrame.add(colorButton, "wrap")
overlayStyleFrame.add(opacityLabel)
overlayStyleFrame.add(self.opacitySpinner, "wrap")
all.add(overlayStyleFrame, "span, wrap")
self.virtualStackCheckbox = JCheckBox("Use Virtual Stack", True)
all.add(self.virtualStackCheckbox, "span, wrap")
# TODO: add non-thermonuclear cancel button functionality
overlayCancelButton = JButton("Cancel", actionPerformed=self.onQuit)
overlayStartButton = JButton("Overlay images",
actionPerformed=self.overlayImages)
all.add(overlayCancelButton, "gapleft push")
all.add(overlayStartButton, "gapleft push")
self.frame = JFrame("Stack Overlay")
self.frame.getContentPane().add(JScrollPane(all))
self.frame.pack()
self.frame.setLocationRelativeTo(None)
self.frame.setVisible(True)
def overlayImages(self, e):
impBase = WindowManager.getImage(
self.imageIDs[self.baseImageBox.getSelectedIndex()])
refBase = impBase.getStack().getProcessor(1)
impOverlay = WindowManager.getImage(
self.imageIDs[self.overlayImageBox.getSelectedIndex()])
refOverlay = impOverlay.getStack().getProcessor(1)
print "Overlaying for stack sizes " + str(
impBase.getStackSize()) + "/" + str(
impOverlay.getStackSize()) + "..."
stack = None
if self.virtualStackCheckbox.isSelected():
stack = OverlayVirtualStack()
stack.overlayOpacity = float(
self.opacitySpinner.getValue()) / 100.0
stack.overlayColor = AWTColorToArray(
self.overlayColorPreviewLabel.getBackground())
stack.base = impBase
stack.overlay = impOverlay
ImagePlus(
"Stack Overlay from " +
self.imageNames[self.baseImageBox.getSelectedIndex()] +
" and " +
self.imageNames[self.overlayImageBox.getSelectedIndex()],
stack).show()
else:
IJ.error(
"Not implemented yet",
"Using normal stacks is not implemented yet. Please use the Virtual Stack option."
)
