def test_should_replacement_return_the_list_if_the_offspring_list_is_empty(self):
"""
5 1
4 2
3 3
2
1 4
0 1 2 3 4 5
"""
ranking = StrengthRanking()
density_estimator = KNearestNeighborDensityEstimator(1)
replacement = RankingAndDensityEstimatorReplacement(ranking, density_estimator)
solution1 = Solution(2, 2)
solution1.objectives = [1, 5]
solution2 = Solution(2, 2)
solution2.objectives = [2, 4]
solution3 = Solution(2, 2)
solution3.objectives = [3, 3]
solution4 = Solution(2, 2)
solution4.objectives = [5, 1]
solution_list = [solution1, solution2, solution3, solution4]
result_list = replacement.replace(solution_list, [])
self.assertEqual(4, len(result_list))
self.assertEqual(0, solution1.attributes["strength_ranking"])
self.assertEqual(0, solution2.attributes["strength_ranking"])
self.assertEqual(0, solution3.attributes["strength_ranking"])
self.assertEqual(0, solution4.attributes["strength_ranking"])
def test_should_replacement_return_the_right_value_case1(self):
"""
5 1
4 2
3 3
2
1 4
0 1 2 3 4 5
List: 1,2,3 OffspringList: 4
Expected result: 4, 1, 3
"""
ranking = StrengthRanking()
density_estimator = KNearestNeighborDensityEstimator(1)
replacement = RankingAndDensityEstimatorReplacement(ranking, density_estimator)
solution1 = Solution(2, 2)
solution1.objectives = [1, 5]
solution2 = Solution(2, 2)
solution2.objectives = [2, 4]
solution3 = Solution(2, 2)
solution3.objectives = [3, 3]
solution4 = Solution(2, 2)
solution4.objectives = [5, 1]
solution_list = [solution1, solution2, solution3]
offspring_list = [solution4]
result_list = replacement.replace(solution_list, offspring_list)
self.assertEqual(3, len(result_list))
self.assertTrue(solution1 in result_list)
self.assertTrue(solution3 in result_list)
self.assertTrue(solution4 in result_list)
def __init__(
self,
problem: Problem,
dominance_comparator: Comparator = store.default_comparator,
max_evaluations: int = 250,
individual_population_size: int = 100,
report_interval: int = 100,
dataDirectory: str = "./decmopy/decmo2/weigths",
):
super().__init__()
self.problem = problem
self.population_size = individual_population_size
self.max_evaluations = max_evaluations
self.report_interval = report_interval
self.dataDirectory = dataDirectory
self.mix_interval = 1
"""Replacement"""
ranking = FastNonDominatedRanking(dominance_comparator)
density_estimator = CrowdingDistance()
self.r = RankingAndDensityEstimatorReplacement(
ranking, density_estimator, RemovalPolicyType.SEQUENTIAL)
self.MIN_VALUES = 0
self.MAX_VALUES = 1
min_values: List[float] = []
max_values: List[float] = []
for _ in range(problem.number_of_objectives):
min_values.append(sys.float_info.max)
max_values.append(sys.float_info.min)
self.extreme_values: List[List[float]] = []
self.extreme_values.append(min_values)
self.extreme_values.append(max_values)
def replacement(self, population: List[S],
offspring_population: List[S]) -> List[List[S]]:
""" This method joins the current and offspring populations to produce the population of the next generation
by applying the ranking and crowding distance selection.
:param population: Parent population.
:param offspring_population: Offspring population.
:return: New population after ranking and crowding distance selection is applied.
"""
ranking = FastNonDominatedRanking(self.dominance_comparator)
density_estimator = CrowdingDistance()
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator,
RemovalPolicyType.ONE_SHOT)
solutions = r.replace(population, offspring_population)
front = self.get_result()
if type(front) is not list:
solutions = [front]
for solution in front:
print(solution.variables[0])
for solution in front:
print(str(front.index(solution)) + ": ",
sep=' ',
end='',
flush=True)
print(solution.objectives, sep=' ', end='', flush=True)
print()
return solutions
def replacement(self, population: List[S],
offspring_population: List[S]) -> List[List[S]]:
ranking = StrengthRanking(self.dominance_comparator)
density_estimator = KNearestNeighborDensityEstimator()
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator,
RemovalPolicyType.SEQUENTIAL)
solutions = r.replace(population, offspring_population)
front = get_non_dominated_solutions(solutions)
objective1 = -1 / self.Uobjecive1 * np.array(
[solution.objectives[0] for solution in front])
objective2 = -1 / self.Uobjecive2 * np.array(
[solution.objectives[1] for solution in front])
HV = calculateHypervolume(list(zip(objective1, objective2)))
print('Hypervolume;', HV)
self.hypervolumeByGeneration.append(HV)
# DO IGD calculation here
IGD = InvertedGenerationalDistance(self.reference_front)
igd = IGD.compute(
list(
zip(-np.array([solution.objectives[0] for solution in front]),
-np.array([solution.objectives[1]
for solution in front]))))
print('IGD1:', igd)
# obj1front=1/self.Uobjecive1*self.reference_front[:, 0]
# obj2front=1/self.Uobjecive2*self.reference_front[:,1]
# igd2 = calculateIGD(list(zip(objective1,objective2)), list(zip(obj1front,obj2front)))
# print('IGD2:',igd2)
self.IGDbyGeneration.append(igd)
return solutions
def replacement(self, population: List[S], offspring_population: List[S]) -> List[List[S]]:
ranking = FastNonDominatedRanking(self.dominance_comparator)
density_estimator = CrowdingDistance()
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator, RemovalPolicyType.ONE_SHOT)
solutions = r.replace(population, offspring_population)
return solutions
def test_should_replacement_return_the_right_value_case3(self):
""""""
points_population = [
[0.13436424411240122, 4.323216008886963],
[0.23308445025757263, 4.574937990387161],
[0.17300740157905092, 4.82329350808847],
[0.9571162814602269, 3.443495331489301],
[0.25529404008730594, 3.36387501100745],
[0.020818108509287336, 5.1051826661880515],
[0.8787178982088466, 3.2716009445324103],
[0.6744550697237632, 3.901350307095427],
[0.7881164487252263, 3.1796004913916516],
[0.1028341459863098, 4.9409270526888935],
]
points_offspring_population = [
[0.3150521745650882, 4.369120371847888],
[0.8967291504209932, 2.506948771242972],
[0.6744550697237632, 3.9361442668874504],
[0.9571162814602269, 3.4388386707431433],
[0.13436424411240122, 4.741872175943253],
[0.25529404008730594, 2.922302861104415],
[0.23308445025757263, 4.580180404770213],
[0.23308445025757263, 4.591260299892424],
[0.9571162814602269, 2.9865495383518694],
[0.25529404008730594, 3.875587748122183],
]
ranking = FastNonDominatedRanking()
density_estimator = KNearestNeighborDensityEstimator(1)
population = []
for i in range(len(points_population)):
population.append(Solution(2, 2))
population[i].objectives = points_population[i]
offspring_population = []
for i in range(len(points_offspring_population)):
offspring_population.append(Solution(2, 2))
offspring_population[i].objectives = points_offspring_population[i]
replacement = RankingAndDensityEstimatorReplacement(ranking, density_estimator)
result_list = replacement.replace(population, offspring_population)
self.assertEqual(10, len(result_list))
for solution in result_list[0:4]:
self.assertEqual(0, solution.attributes["dominance_ranking"])
for solution in result_list[5:9]:
self.assertEqual(1, solution.attributes["dominance_ranking"])
def replacement(self, population: List[S], offspring_population: List[S]) -> List[List[S]]:
"""This method joins the current and offspring populations to produce the population of the next generation
by applying the ranking and crowding distance selection.
:param population: Parent population.
:param offspring_population: Offspring population.
:return: New population after ranking and crowding distance selection is applied.
"""
ranking = StrengthRanking(self.dominance_comparator)
density_estimator = KNearestNeighborDensityEstimator()
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator, RemovalPolicyType.SEQUENTIAL)
solutions = r.replace(population, offspring_population)
return solutions
def replacement(self, population: List[S], offspring_population: List[S]) -> List[List[S]]:
""" This method joins the current and offspring populations to produce the population of the next generation
by applying the ranking and crowding distance selection.
:param population: Parent population.
:param offspring_population: Offspring population.
:return: New population after ranking and crowding distance selection is applied.
"""
ranking = FastNonDominatedRanking()
density_estimator = CrowdingDistance()
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator, RemovalPolicyType.ONE_SHOT)
solutions = r.replace(population, offspring_population)
return solutions
def test_should_replacement_return_the_right_value_case2(self):
"""
5 1
4 2
3 3
2 5
1 4
0 1 2 3 4 5
List: 1,2,4 OffspringList: 3,5
Expected result: 1, 5, 4
"""
ranking = StrengthRanking()
density_estimator = KNearestNeighborDensityEstimator(1)
replacement = RankingAndDensityEstimatorReplacement(ranking, density_estimator)
solution1 = Solution(2, 2)
solution1.objectives = [1, 5]
solution2 = Solution(2, 2)
solution2.objectives = [2, 4]
solution3 = Solution(2, 2)
solution3.objectives = [3, 3]
solution4 = Solution(2, 2)
solution4.objectives = [5, 1]
solution5 = Solution(2, 2)
solution5.objectives = [2.5, 2.5]
solution_list = [solution1, solution2, solution4]
offspring_list = [solution3, solution5]
result_list = replacement.replace(solution_list, offspring_list)
self.assertEqual(0, solution1.attributes["strength_ranking"])
self.assertEqual(0, solution2.attributes["strength_ranking"])
self.assertEqual(1, solution3.attributes["strength_ranking"])
self.assertEqual(0, solution4.attributes["strength_ranking"])
self.assertEqual(0, solution5.attributes["strength_ranking"])
self.assertEqual(3, len(result_list))
self.assertTrue(solution1 in result_list)
self.assertTrue(solution5 in result_list)
self.assertTrue(solution4 in result_list)
def replacement(self, population: List[S], offspring_population: List[S]) -> List[List[S]]:
""" This method joins the current and offspring populations to produce the population of the next generation
by applying the ranking and crowding distance selection.
:param population: Parent population.
:param offspring_population: Offspring population.
:return: New population after ranking and crowding distance selection is applied.
"""
ranking = FastNonDominatedRanking(self.dominance_comparator)
density_estimator = CrowdingDistance()
# gradient steps
# append new solutions to the offspring
grad_sols = self.problem.step_discrepancy(population)
grad_sols = self.evaluate(grad_sols)
offspring_population.extend(grad_sols)
r = RankingAndDensityEstimatorReplacement(ranking, density_estimator, RemovalPolicyType.ONE_SHOT)
solutions = r.replace(population, offspring_population)
return solutions
def __init__(
self,
problem: Problem,
dominance_comparator: Comparator = store.default_comparator,
max_iterations: int = 250,
individual_population_size: int = 100,
report_interval: int = 100,
):
super().__init__()
self.problem = problem
self.population_size = individual_population_size
self.max_iterations = max_iterations
self.report_interval = report_interval
self.mix_interval = self.population_size / 10
"""Replacement"""
ranking = FastNonDominatedRanking(dominance_comparator)
density_estimator = CrowdingDistance()
self.r = RankingAndDensityEstimatorReplacement(
ranking, density_estimator, RemovalPolicyType.SEQUENTIAL)
class DECMO_INTEG(Algorithm[S, R]):
def __init__(
self,
problem: Problem,
dominance_comparator: Comparator = store.default_comparator,
max_iterations: int = 250,
individual_population_size: int = 100,
report_interval: int = 100,
):
super().__init__()
self.problem = problem
self.population_size = individual_population_size
self.max_iterations = max_iterations
self.report_interval = report_interval
self.mix_interval = self.population_size / 10
"""Replacement"""
ranking = FastNonDominatedRanking(dominance_comparator)
density_estimator = CrowdingDistance()
self.r = RankingAndDensityEstimatorReplacement(
ranking, density_estimator, RemovalPolicyType.SEQUENTIAL)
def run(self) -> List[S]:
pool_1_size = self.population_size
pool_2_size = self.population_size
selection_operator_1 = BinaryTournamentSelection()
crossover_operator_1 = IntegerSBXCrossover(1.0, 20.0)
mutation_operator_1 = IntegerPolynomialMutation(
1.0 / self.problem.number_of_variables, 20.0)
selection_operator_2 = DifferentialEvolutionSelection()
crossover_operator_2 = DifferentialEvolutionCrossover(0.2, 0.5, 0.5)
dominance = DominanceComparator()
max_iterations = self.max_iterations
iterations = 0
parent_1: List[IntegerSolution] = [None, None]
generational_hv: List[float] = []
current_gen = 0
"""Create the initial subpopulation pools and evaluate them"""
pool_1: List[IntegerSolution] = []
for i in range(pool_1_size):
pool_1.append(self.problem.create_solution())
pool_1[i] = self.problem.evaluate(pool_1[i])
pool_2: List[IntegerSolution] = []
for i in range(pool_2_size):
pool_2.append(self.problem.create_solution())
pool_2[i] = self.problem.evaluate(pool_2[i])
evaluations = pool_1_size + pool_2_size
mix = self.mix_interval
problem = self.problem
h = HyperVolume(reference_point=[1] *
self.problem.number_of_objectives)
initial_population = True
"""The main evolutionary cycle"""
while iterations < max_iterations:
combi: List[IntegerSolution] = []
if not initial_population:
offspring_pop_1: List[IntegerSolution] = []
offspring_pop_2: List[IntegerSolution] = []
"""Evolve pool 1"""
for i in range(pool_1_size):
parent_1[0] = selection_operator_1.execute(pool_1)
parent_1[1] = selection_operator_1.execute(pool_1)
child_1: IntegerSolution = crossover_operator_1.execute(
parent_1)[0]
child_1 = mutation_operator_1.execute(child_1)
child_1 = problem.evaluate(child_1)
evaluations += 1
offspring_pop_1.append(child_1)
"""Evolve pool 2"""
for i in range(pool_2_size):
parent_2: List[
IntegerSolution] = selection_operator_2.execute(pool_2)
crossover_operator_2.current_individual = pool_2[i]
child_2 = crossover_operator_2.execute(parent_2)
child_2 = problem.evaluate(child_2[0])
evaluations += 1
result = dominance.compare(pool_2[i], child_2)
if result == -1:
offspring_pop_2.append(pool_2[i])
elif result == 1:
offspring_pop_2.append(child_2)
else:
offspring_pop_2.append(child_2)
offspring_pop_2.append(pool_2[i])
ind_1 = pool_1[random.randint(0, pool_1_size - 1)]
ind_2 = pool_2[random.randint(0, pool_2_size - 1)]
offspring_pop_1.append(ind_1)
offspring_pop_2.append(ind_2)
offspring_pop_1.extend(pool_1)
pool_1 = self.r.replace(offspring_pop_1[:pool_1_size],
offspring_pop_1[pool_1_size:])
pool_2 = self.r.replace(offspring_pop_2[:pool_2_size],
offspring_pop_2[pool_2_size:])
mix -= 1
if mix == 0:
"""Time to perform fitness sharing"""
mix = self.mix_interval
combi = combi + pool_1 + pool_2
# print("Combi size: ", len(combi))
"""pool1size/10"""
combi = self.r.replace(
combi[:int(pool_1_size / 10)],
combi[int(pool_1_size / 10):len(combi)],
)
"""
print(
"Sizes: ",
len(pool_1) + len(combi),
len(pool_2) + len(combi),
"\n",
)
"""
pool_1 = self.r.replace(pool_1, combi)
pool_2 = self.r.replace(pool_2, combi)
if initial_population:
initial_population = False
iterations += 1
print("Iterations: ", str(iterations))
"""
hval_1 = h.compute([s.objectives for s in pool_1])
hval_2 = h.compute([s.objectives for s in pool_2])
print("hval_1: ", str(hval_1))
print("hval_2: ", str(hval_2), "\n")
"""
new_gen = int(evaluations / self.report_interval)
if new_gen > current_gen:
combi = combi + pool_1 + pool_2
combi = self.r.replace(combi[:(2 * pool_1_size)],
combi[(2 * pool_1_size):])
hval = h.compute([s.objectives for s in combi])
for i in range(current_gen, new_gen, 1):
generational_hv.append(hval)
current_gen = new_gen
"""#Write runtime generational HV to file"""
"""Return the first non dominated front"""
combi_ini: List[IntegerSolution] = []
combi_ini.extend(pool_1)
combi_ini.extend(pool_2)
combi_ini = self.r.replace(
combi_ini[:pool_1_size + pool_2_size],
combi_ini[pool_1_size + pool_2_size:],
)
return combi_ini
def get_result(self) -> R:
return self.solutions
def get_name(self) -> str:
return "DECMO"
def create_initial_solutions(self) -> List[S]:
pass
def evaluate(self, IntegerSolutions: List[S]) -> List[S]:
pass
def stopping_condition_is_met(self) -> bool:
pass
def get_observable_data(self) -> dict:
pass
def init_progress(self) -> None:
pass
def step(self) -> None:
pass
def update_progress(self):
pass
def run(self):
""" Execute the algorithm. """
self.start_computing_time = time.time()
create_solution = dask.delayed(self.problem.create_solution)
evaluate_solution = dask.delayed(self.problem.evaluate)
task_pool = as_completed([], with_results=True)
for _ in range(self.number_of_cores):
new_solution = create_solution()
new_evaluated_solution = evaluate_solution(new_solution)
future = self.client.compute(new_evaluated_solution)
task_pool.add(future)
batches = task_pool.batches()
auxiliar_population = []
while len(auxiliar_population) < self.population_size:
batch = next(batches)
for _, received_solution in batch:
auxiliar_population.append(received_solution)
if len(auxiliar_population) < self.population_size:
break
# submit as many new tasks as we collected
for _ in batch:
new_solution = create_solution()
new_evaluated_solution = evaluate_solution(new_solution)
future = self.client.compute(new_evaluated_solution)
task_pool.add(future)
self.init_progress()
# perform an algorithm step to create a new solution to be evaluated
while not self.stopping_condition_is_met():
batch = next(batches)
for _, received_solution in batch:
offspring_population = [received_solution]
# replacement
ranking = FastNonDominatedRanking(self.dominance_comparator)
density_estimator = CrowdingDistance()
r = RankingAndDensityEstimatorReplacement(
ranking, density_estimator, RemovalPolicyType.ONE_SHOT)
auxiliar_population = r.replace(auxiliar_population,
offspring_population)
# selection
mating_population = []
for _ in range(2):
solution = self.selection_operator.execute(
auxiliar_population)
mating_population.append(solution)
# Reproduction and evaluation
new_task = self.client.submit(reproduction, mating_population,
self.problem,
self.crossover_operator,
self.mutation_operator)
task_pool.add(new_task)
# update progress
self.evaluations += 1
self.solutions = auxiliar_population
self.update_progress()
if self.stopping_condition_is_met():
break
self.total_computing_time = time.time() - self.start_computing_time
# at this point, computation is done
for future, _ in task_pool:
future.cancel()
class DECMO2(Algorithm[S, R]):
def __init__(
self,
problem: Problem,
dominance_comparator: Comparator = store.default_comparator,
max_evaluations: int = 250,
individual_population_size: int = 100,
report_interval: int = 100,
dataDirectory: str = "./decmopy/decmo2/weigths",
):
super().__init__()
self.problem = problem
self.population_size = individual_population_size
self.max_evaluations = max_evaluations
self.report_interval = report_interval
self.dataDirectory = dataDirectory
self.mix_interval = 1
"""Replacement"""
ranking = FastNonDominatedRanking(dominance_comparator)
density_estimator = CrowdingDistance()
self.r = RankingAndDensityEstimatorReplacement(
ranking, density_estimator, RemovalPolicyType.SEQUENTIAL)
self.MIN_VALUES = 0
self.MAX_VALUES = 1
min_values: List[float] = []
max_values: List[float] = []
for _ in range(problem.number_of_objectives):
min_values.append(sys.float_info.max)
max_values.append(sys.float_info.min)
self.extreme_values: List[List[float]] = []
self.extreme_values.append(min_values)
self.extreme_values.append(max_values)
def run(self) -> List[S]:
# selection operator 1
selection_operator_1 = BinaryTournamentSelection()
# selection operator 2
selection_operator_2 = DifferentialEvolutionSelection()
# crossover operator 1
crossover_operator_1 = SBXCrossover(1.0, 20.0)
# crossover operator 2
crossover_operator_2 = DifferentialEvolutionCrossover(0.2, 0.5, 0.5)
# crossover operator 3
crossover_operator_3 = DifferentialEvolutionCrossover(1.0, 0.5, 0.5)
# mutation operator 1
mutation_operator_1 = PolynomialMutation(
1.0 / self.problem.number_of_variables, 20.0)
# dominance comparator
dominance = DominanceComparator()
# array that stores the "generational" HV quality
generational_hv: List[float] = []
parent_1: List[FloatSolution] = [None, None]
parent_2: List[FloatSolution] = []
parent_3: List[FloatSolution] = []
# initialize some local and global variables
pool_1: List[FloatSolution] = []
pool_2: List[FloatSolution] = []
# size of elite subset used for fitness sharing between subpopulations
nrOfDirectionalSolutionsToEvolve = int(self.population_size / 5)
# subpopulation 1
pool_1_size = int(self.population_size -
(nrOfDirectionalSolutionsToEvolve / 2))
# subpopulation 2
pool_2_size = int(self.population_size -
(nrOfDirectionalSolutionsToEvolve / 2))
print(
str(pool_1_size) + " - " + str(nrOfDirectionalSolutionsToEvolve) +
" - " + str(self.mix_interval))
evaluations = 0
current_gen = 0
directionalArchiveSize = 2 * self.population_size
weights = self.__create_uniform_weights(
directionalArchiveSize, self.problem.number_of_objectives)
directionalArchive = self.__create_directional_archive(weights)
neighbourhoods = self.__create_neighbourhoods(directionalArchive,
self.population_size)
nrOfReplacements = 1
iniID = 0
# Create the initial pools
# pool1
pool_1: List[FloatSolution] = []
for _ in range(pool_1_size):
new_solution = self.problem.create_solution()
new_solution = self.problem.evaluate(new_solution)
evaluations += 1
pool_1.append(new_solution)
self.__update_extreme_values(new_solution)
dr = directionalArchive[iniID]
dr.curr_sol = new_solution
iniID += 1
# pool2
pool_2: List[FloatSolution] = []
for _ in range(pool_2_size):
new_solution = self.problem.create_solution()
new_solution = self.problem.evaluate(new_solution)
evaluations += 1
pool_2.append(new_solution)
self.__update_extreme_values(new_solution)
dr = directionalArchive[iniID]
dr.curr_sol = new_solution
iniID += 1
# directional archive initialization
pool_A: List[FloatSolution] = []
while iniID < directionalArchiveSize:
new_solution = self.problem.create_solution()
new_solution = self.problem.evaluate(new_solution)
evaluations += 1
pool_A.append(new_solution)
self.__update_extreme_values(new_solution)
dr = directionalArchive[iniID]
dr.curr_sol = new_solution
iniID += 1
mix = self.mix_interval
h = HyperVolume(reference_point=[1] *
self.problem.number_of_objectives)
insertionRate: List[float] = [0, 0, 0]
bonusEvals: List[int] = [0, 0, nrOfDirectionalSolutionsToEvolve]
testRun = True
# record the generational HV of the initial population
combiAll: List[FloatSolution] = []
cGen = int(evaluations / self.report_interval)
if cGen > 0:
combiAll = pool_1 + pool_2 + pool_A
combiAll = self.r.replace(
combiAll[:pool_1_size + pool_2_size],
combiAll[pool_1_size + pool_2_size:],
)
hval = h.compute([s.objectives for s in combiAll])
for _ in range(cGen):
generational_hv.append(hval)
current_gen = cGen
# the main loop of the algorithm
while evaluations < self.max_evaluations:
offspringPop1: List[FloatSolution] = []
offspringPop2: List[FloatSolution] = []
offspringPop3: List[FloatSolution] = []
dirInsertPool1: List[FloatSolution] = []
dirInsertPool2: List[FloatSolution] = []
dirInsertPool3: List[FloatSolution] = []
# evolve pool1 - using SPEA2 evolutionary model
nfe: int = 0
while nfe < (pool_1_size + bonusEvals[0]):
parent_1[0] = selection_operator_1.execute(pool_1)
parent_1[1] = selection_operator_1.execute(pool_1)
child1a: FloatSolution = crossover_operator_1.execute(
parent_1)[0]
child1a = mutation_operator_1.execute(child1a)
child1a = self.problem.evaluate(child1a)
evaluations += 1
nfe += 1
offspringPop1.append(child1a)
dirInsertPool1.append(child1a)
# evolve pool2 - using DEMO SP evolutionary model
i: int = 0
unselectedIDs: List[int] = []
for ID in range(len(pool_2)):
unselectedIDs.append(ID)
nfe = 0
while nfe < (pool_2_size + bonusEvals[1]):
index = random.randint(0, len(unselectedIDs) - 1)
i = unselectedIDs[index]
unselectedIDs.pop(index)
parent_2 = selection_operator_2.execute(pool_2)
crossover_operator_2.current_individual = pool_2[i]
child2 = crossover_operator_2.execute(parent_2)
child2 = self.problem.evaluate(child2[0])
evaluations += 1
nfe += 1
result = dominance.compare(pool_2[i], child2)
if result == -1: # solution i dominates child
offspringPop2.append(pool_2[i])
elif result == 1: # child dominates
offspringPop2.append(child2)
else: # the two solutions are non-dominated
offspringPop2.append(child2)
offspringPop2.append(pool_2[i])
dirInsertPool2.append(child2)
if len(unselectedIDs) == 0:
for ID in range(len(pool_2)):
unselectedIDs.append(random.randint(
0,
len(pool_2) - 1))
# evolve pool3 - Directional Decomposition DE/rand/1/bin
IDs = self.__compute_neighbourhood_Nfe_since_last_update(
neighbourhoods, directionalArchive,
nrOfDirectionalSolutionsToEvolve)
nfe = 0
for j in range(len(IDs)):
if nfe < bonusEvals[2]:
nfe += 1
else:
break
cID = IDs[j]
chosenSol: FloatSolution = None
if directionalArchive[cID].curr_sol != None:
chosenSol = directionalArchive[cID].curr_sol
else:
chosenSol = pool_1[0]
print("error!")
parent_3: List[FloatSolution] = [None, None, None]
r1 = random.randint(0, len(neighbourhoods[cID]) - 1)
r2 = random.randint(0, len(neighbourhoods[cID]) - 1)
r3 = random.randint(0, len(neighbourhoods[cID]) - 1)
while r2 == r1:
r2 = random.randint(0, len(neighbourhoods[cID]) - 1)
while r3 == r1 or r3 == r2:
r3 = random.randint(0, len(neighbourhoods[cID]) - 1)
parent_3[0] = directionalArchive[r1].curr_sol
parent_3[1] = directionalArchive[r2].curr_sol
parent_3[2] = directionalArchive[r3].curr_sol
crossover_operator_3.current_individual = chosenSol
child3 = crossover_operator_3.execute(parent_3)[0]
child3 = mutation_operator_1.execute(child3)
child3 = self.problem.evaluate(child3)
evaluations += 1
dirInsertPool3.append(child3)
# compute directional improvements
# pool1
improvements = 0
for j in range(len(dirInsertPool1)):
testSol = dirInsertPool1[j]
self.__update_extreme_values(testSol)
improvements += self.__update_neighbourhoods(
directionalArchive, testSol, nrOfReplacements)
insertionRate[0] += (1.0 * improvements) / len(dirInsertPool1)
# pool2
improvements = 0
for j in range(len(dirInsertPool2)):
testSol = dirInsertPool2[j]
self.__update_extreme_values(testSol)
improvements += self.__update_neighbourhoods(
directionalArchive, testSol, nrOfReplacements)
insertionRate[1] += (1.0 * improvements) / len(dirInsertPool2)
# pool3
improvements = 0
for j in range(len(dirInsertPool3)):
testSol = dirInsertPool3[j]
self.__update_extreme_values(testSol)
improvements += self.__update_neighbourhoods(
directionalArchive, testSol, nrOfReplacements)
# on java, dividing a floating number by 0, returns NaN
# on python, dividing a floating number by 0, returns an exception
if len(dirInsertPool3) == 0:
insertionRate[2] = None
else:
insertionRate[2] += (1.0 * improvements) / len(dirInsertPool3)
for dr in directionalArchive:
offspringPop3.append(dr.curr_sol)
offspringPop1 = offspringPop1 + pool_1
pool_1 = self.r.replace(offspringPop1[:pool_1_size],
offspringPop1[pool_1_size:])
pool_2 = self.r.replace(offspringPop2[:pool_2_size],
offspringPop2[pool_2_size:])
combi: List[FloatSolution] = []
mix -= 1
if mix == 0:
mix = self.mix_interval
combi = combi + pool_1 + pool_2 + offspringPop3
print("Combi size: " + str(len(combi)))
combi = self.r.replace(
combi[:nrOfDirectionalSolutionsToEvolve],
combi[nrOfDirectionalSolutionsToEvolve:],
)
insertionRate[0] /= self.mix_interval
insertionRate[1] /= self.mix_interval
if insertionRate[2] != None:
insertionRate[2] /= self.mix_interval
"""
print(
"Insertion rates: "
+ str(insertionRate[0])
+ " - "
+ str(insertionRate[1])
+ " - "
+ str(insertionRate[2])
+ " - Test run:"
+ str(testRun)
)
"""
if testRun:
if (insertionRate[0] > insertionRate[1]) and (
insertionRate[0] > insertionRate[2]):
print("SPEA2 win - bonus run!")
bonusEvals[0] = nrOfDirectionalSolutionsToEvolve
bonusEvals[1] = 0
bonusEvals[2] = 0
if (insertionRate[1] > insertionRate[0]) and (
insertionRate[1] > insertionRate[2]):
print("DE win - bonus run!")
bonusEvals[0] = 0
bonusEvals[1] = nrOfDirectionalSolutionsToEvolve
bonusEvals[2] = 0
if (insertionRate[2] > insertionRate[0]) and (
insertionRate[2] > insertionRate[1]):
print("Directional win - no bonus!")
bonusEvals[0] = 0
bonusEvals[1] = 0
bonusEvals[2] = nrOfDirectionalSolutionsToEvolve
else:
print("Test run - no bonus!")
bonusEvals[0] = 0
bonusEvals[1] = 0
bonusEvals[2] = nrOfDirectionalSolutionsToEvolve
testRun = not testRun
insertionRate[0] = 0.0
insertionRate[1] = 0.0
insertionRate[2] = 0.0
pool_1 = pool_1 + combi
pool_2 = pool_2 + combi
print("Sizes: " + str(len(pool_1)) + " " + str(len(pool_2)))
pool_1 = self.r.replace(pool_1[:pool_1_size],
pool_1[pool_1_size:])
pool_2 = self.r.replace(pool_2[:pool_2_size],
pool_2[pool_2_size:])
self.__clear_Nfe_history(directionalArchive)
hVal1 = h.compute([s.objectives for s in pool_1])
hVal2 = h.compute([s.objectives for s in pool_2])
hVal3 = h.compute([s.objectives for s in offspringPop3])
newGen = int(evaluations / self.report_interval)
if newGen > current_gen:
print("Hypervolume: " + str(newGen) + " - " + str(hVal1) +
" - " + str(hVal2) + " - " + str(hVal3))
combi = combi + pool_1 + pool_2 + offspringPop3
combi = self.r.replace(combi[:self.population_size * 2],
combi[self.population_size * 2:])
hval = h.compute([s.objectives for s in combi])
for j in range(current_gen, newGen):
generational_hv.append(hval)
current_gen = newGen
# return the final combined non-dominated set of maximum size = (populationSize * 2)
combiAll: List[FloatSolution] = []
combiAll = combiAll + pool_1 + pool_2 + pool_A
combiAll = self.r.replace(combiAll[:self.population_size * 2],
combiAll[self.population_size * 2:])
return combiAll
def __compute_euclidean_distance(self, vector1: List[float],
vector2: List[float]):
value = 0.0
for i in range(len(vector1)):
value += (vector1[i] - vector2[i]) * (vector1[i] - vector2[i])
return math.sqrt(value)
def __create_uniform_weights(self, dirArchiveSize: int,
nrOfObjectives: int):
lmdb = np.zeros(shape=(dirArchiveSize, nrOfObjectives))
if nrOfObjectives == 2 and dirArchiveSize < 500:
for n in range(dirArchiveSize):
a = 1.0 * n / (dirArchiveSize - 1)
lmdb[n][0] = a
lmdb[n][1] = 1 - a
print(lmdb[n][0])
print(lmdb[n][1])
else:
dataFileName = ("W" + str(nrOfObjectives) + "D_" +
str(dirArchiveSize) + ".dat")
data_path = self.dataDirectory + "/" + dataFileName
print(dataFileName)
print(data_path)
dg = DistribGen()
dg.create_distribution(self.problem.number_of_objectives,
dirArchiveSize, data_path)
try:
i = j = 0
with open(data_path) as f:
# lines = f.readlines()
lines = [line.rstrip() for line in f]
for line in lines:
words = line.split() # "tokenizer"
j = 0
for word in words:
value = float(word.replace(",", "."))
lmdb[i][j] = value
j += 1
i += 1
except Exception as e:
print(e)
print("initUniformWeight: failed when reading for file: " +
data_path)
return lmdb
def __create_directional_archive(self, lmbd: List[float]):
directionalArchive: List[DirectionRec] = []
for i in range(len(lmbd)):
di = DirectionRec(i, lmbd[i], None, sys.float_info.max, 0)
directionalArchive.append(di)
return directionalArchive
def __compute_neighbourhood_Nfe_since_last_update(
self,
neighbourhoods: List[List[int]],
directionalArchive: List[DirectionRec],
intensificationClusters: int,
):
averageNfe: List[CompRec] = []
ID = 0
for neighbourhood in neighbourhoods:
avg = 0.0
for nID in neighbourhood:
avg += directionalArchive[nID].nfeSinceLastUpdate
avg /= len(neighbourhood)
averageNfe.append(CompRec(ID, avg))
ID += 1
averageNfe.sort()
result: List[int] = []
for i in range(intensificationClusters):
result.append(averageNfe[len(averageNfe) - 1 - i].id)
return result
def __create_neighbourhoods(self, dirArchive: List[DirectionRec],
neighborhood_size: int):
neighbourhoods: List[List[int]] = []
for di1 in dirArchive:
distToNeighbour: List[CompRec] = []
for di2 in dirArchive:
if di1.id != di2.id:
distToNeighbour.append(
CompRec(
di2.id,
self.__compute_euclidean_distance(
di1.weigh_vector, di2.weigh_vector),
))
distToNeighbour.sort()
neighbourhood: List[int] = []
for i in range(neighborhood_size):
if i < len(distToNeighbour):
neighbourhood.append(distToNeighbour[i].id)
neighbourhoods.append(neighbourhood)
return neighbourhoods
def __update_neighbourhoods(
self,
directionalArchive: List[DirectionRec],
newSolution: FloatSolution,
nrOfReplacements: int,
):
improvedDistances: List[CompRec] = []
isImprovement = False
for cdr in directionalArchive:
newFitnessValue = self.__evaluate_Tchebycheff_Fitness(
newSolution, cdr.weigh_vector)
if newFitnessValue < cdr.fitness_value:
improvedDistances.append(CompRec(cdr.id, newFitnessValue))
isImprovement = True
else:
cdr.nfeSinceLastUpdate = cdr.nfeSinceLastUpdate + 1
improvedDistances.sort()
improvedDistances.reverse()
if isImprovement:
for _ in range(nrOfReplacements):
j = 0
cdr = directionalArchive[improvedDistances[j].id]
cdr.curr_sol = newSolution
cdr.fitness_value = improvedDistances[j].value
cdr.nfeSinceLastUpdate = 0
return 1
return 0
def __evaluate_Tchebycheff_Fitness(self, individual: FloatSolution,
lmbd: List[float]):
max = sys.float_info.min
for i in range(self.problem.number_of_objectives):
diff = abs(individual.objectives[i] -
self.extreme_values[self.MIN_VALUES][i])
tcheFuncVal: float = None
if lmbd[i] == 0:
tcheFuncVal = 0.000001 * diff
else:
tcheFuncVal = diff * lmbd[i]
if tcheFuncVal > max:
max = tcheFuncVal
return max
def __update_extreme_values(self, sol: FloatSolution):
for i in range(self.problem.number_of_objectives):
objValue = sol.objectives[i]
if objValue < self.extreme_values[self.MIN_VALUES][i]:
self.extreme_values[self.MIN_VALUES][i] = objValue
if objValue > self.extreme_values[self.MAX_VALUES][i]:
self.extreme_values[self.MAX_VALUES][i] = objValue
def __clear_Nfe_history(self, directionalArchive: List[DirectionRec]):
for dr in directionalArchive:
dr.nfeSinceLastUpdate = 0
def get_result(self) -> R:
return self.solutions
def get_name(self) -> str:
return "DECMO"
def create_initial_solutions(self) -> List[S]:
pass
def evaluate(self, solutions: List[S]) -> List[S]:
pass
def stopping_condition_is_met(self) -> bool:
pass
def get_observable_data(self) -> dict:
pass
def init_progress(self) -> None:
pass
def step(self) -> None:
pass
def update_progress(self):
pass