def test_submit_real(mode, user_format, file, seq, skipPDB, email, name,
silent, host):
response = jpredapi.submit(mode=mode,
user_format=user_format,
file=file,
seq=seq,
skipPDB=skipPDB,
email=email,
name=name,
silent=silent,
host=host)
assert response.status_code == 202 and "Created JPred job" or "You have successfully submitted" in response.text
def test_get_results_real(results_dir_path, extract, silent, host, jpred4):
job_response = jpredapi.submit(mode="single",
user_format="raw",
seq="MQVWPIEGIKKFETLSYLPP")
result_url = job_response.headers['Location']
jobid = re.search(r"(jp_.*)$", result_url).group(1)
response = jpredapi.get_results(jobid=jobid,
results_dir_path=results_dir_path,
extract=extract,
silent=silent,
host=host,
jpred4=jpred4)
assert response.status_code == 200
def test_submit(mode, user_format, file, seq, skipPDB, email, name, silent,
host):
with patch('jpredapi.submit') as mock_submit:
mock_submit.return_value.status_code = 202
mock_submit.return_value.text = "Created JPred job"
response = jpredapi.submit(mode=mode,
user_format=user_format,
file=file,
seq=seq,
skipPDB=skipPDB,
email=email,
name=name,
silent=silent,
host=host)
assert response.status_code == 202 and "Created JPred job" or "You have successfully submitted" in response.text
def submit_jpred(sequence):
return jpredapi.submit(mode="single", user_format="raw", seq=sequence)