def test_small():
out_dir = os.path.join(TEST_DATA_DIR,
'return/enigma50by30/return/RDP_Classifier_output')
Var.out_allRank_flpth = os.path.join(out_dir, 'out_allRank.tsv')
Var.report_dir = os.path.join(run_dir, 'report_enigma50by30')
os.mkdir(Var.report_dir)
Var.params = Params(dict(**req, conf=0.8))
report.HTMLReportWriter(cmd_l=['test,', 'test,', 'small']).write()
def test_dummy(i, conf):
out_dir = os.path.join(TEST_DATA_DIR,
'return/dummy10by8/return/RDP_Classifier_output')
Var.out_allRank_flpth = os.path.join(out_dir, 'out_allRank.tsv')
Var.report_dir = os.path.join(run_dir, 'report_dummy10by8_conf%g' % conf)
os.mkdir(Var.report_dir)
Var.params = Params(dict(
**req,
conf=conf,
))
report.HTMLReportWriter(
cmd_l=['test,', 'test,', 'dummy10by8',
'conf=%g' % conf]).write()
def test_small_linspace():
out_dir = os.path.join(TEST_DATA_DIR,
'return/enigma50by30/return/RDP_Classifier_output')
Var.out_allRank_flpth = os.path.join(out_dir, 'out_allRank.tsv')
for i, conf in enumerate(np.linspace(0, 1, 11)):
Var.report_dir = os.path.join(run_dir,
'report_enigma50by30_conf%g' % conf)
os.mkdir(Var.report_dir)
Var.params = Params(dict(**req, conf=conf))
report.HTMLReportWriter(
cmd_l=['test,', 'test,', 'small',
'conf=%g' % conf]).write()
def test_tiny(i):
out_dir = os.path.join(TEST_DATA_DIR,
'return/dummyTiny/return/RDP_Classifier_output')
Var.out_allRank_flpth = os.path.join(out_dir, 'out_allRank%d.tsv' % i)
Var.report_dir = os.path.join(run_dir, 'report_dummyTiny_%d' % i)
os.mkdir(Var.report_dir)
Var.params = Params(dict(
**req,
conf=0.55555,
))
with open(Var.out_allRank_flpth) as fh:
allRank_lines = fh.readlines()
report.HTMLReportWriter(cmd_l=['test,', 'test,', 'dummyTiny',
'i=%d' % i] + allRank_lines).write()
def test_large():
'''
Globals used:
report_dir, report_template_flpth
out_allRank_flpth
params
'''
out_dir = os.path.join(
TEST_DATA_DIR, 'return/enigma17770by511/return/RDP_Classifier_output/')
Var.out_allRank_flpth = os.path.join(out_dir, 'out_allRank.tsv')
Var.report_dir = os.path.join(RUN_DIR, 'report_enigma17770by511')
os.mkdir(Var.report_dir)
Var.params = Params(dict(**req, conf=0.7777))
report.HTMLReportWriter(cmd_l=['test,', 'test,', 'large'] * 10).write()