def test_generate_kite_fasta_duplicate(self):
with self.assertRaises(Exception):
out_path = os.path.join(
tempfile.gettempdir(), '{}.fa'.format(uuid.uuid4())
)
fasta.generate_kite_fasta(
self.kite_duplicate_feature_path, out_path
)
def test_generate_kite_fasta(self):
out_path = os.path.join(self.temp_dir, '{}.fa'.format(uuid.uuid4()))
self.assertEqual((out_path, 15),
fasta.generate_kite_fasta(self.kite_feature_path,
out_path))
with open(out_path, 'r') as f, open(self.kite_fasta_path, 'r') as fa:
self.assertEqual(fa.read(), f.read())
def test_generate_kite_fasta_collision(self):
with mock.patch('kb_python.fasta.logger.warning') as warning:
out_path = os.path.join(self.temp_dir,
'{}.fa'.format(uuid.uuid4()))
self.assertEqual(
(out_path, 15),
fasta.generate_kite_fasta(self.kite_collision_feature_path,
out_path))
warning.assert_called_once()
with open(out_path, 'r') as f, open(self.kite_collision_fasta_path,
'r') as fa:
self.assertEqual(fa.read(), f.read())
def test_generate_kite_fasta_wrong_order(self):
with self.assertRaises(Exception):
out_path = os.path.join(self.temp_dir,
'{}.fa'.format(uuid.uuid4()))
fasta.generate_kite_fasta(self.kite_order_feature_path, out_path)