def check_cm_jobs():
con = psycopg2.connect("dbname=%s user=%s password=%s" % (config.get('Database', 'name'),
config.get('Database', 'user'),
config.get('Database', 'password')))
cursor = con.cursor()
cursor.execute('select cm_job_id from inference_inferencejob where status=1 and inf_job_id is null')
for row in cursor.fetchall():
jobid = row[0]
if jobid is not None:
jobstate = kbase.user_job_state(config.get('KBase', 'ujs_service_url'),
config.get('KBase', 'user'),
config.get('KBase', 'password'),
jobid)
jobstatus = jobstate.get_job_status()
#print jobstatus
status = jobstatus[1]
if status == 'error':
print "Problem: ", jobstatus[2]
elif status == 'complete':
#print "Decription: ", jobstate.get_job_description()
#print "Info: ", jobstate.get_job_info()
cm_result_ref = jobstate.get_results()['workspaceids'][0]
print "result at: ", cm_result_ref
start_inferelator(con, jobid, cm_result_ref)
else:
print jobstatus
cursor.close()
con.close()
def get_result_object(jobid):
"""retrieve result data from the job service"""
jobstate = kbase.user_job_state(config.get('KBase', 'ujs_service_url'),
config.get('KBase', 'user'),
config.get('KBase', 'password'),
jobid)
jobstatus = jobstate.get_job_status()
status = jobstatus[1]
if status == 'error':
print "Problem: ", jobstatus[2]
return None
elif status == 'complete':
result_ref = jobstate.get_results()['workspaceids'][0]
print "result at: ", result_ref
ws_name, inst_name = result_ref.split('/')
result_ws = kbase.workspace(config.get('KBase', 'ws_service_url'),
ws_name=ws_name,
user=config.get('KBase', 'user'),
password=config.get('KBase', 'password'))
return result_ws.get_object(inst_name)
