def bilstm_crf_predcit():
# 重新初始化模型，构建配置信息，和train部分一样
input = Input(shape=(max_len, ))
model = Embedding(input_dim=n_words + 1,
output_dim=20,
input_length=max_len,
mask_zero=True)(input) # 20-dim embedding
model = Bidirectional(
LSTM(units=50, return_sequences=True,
recurrent_dropout=0.1))(model) # variational biLSTM
model = TimeDistributed(Dense(50, activation="relu"))(
model) # a dense layer as suggested by neuralNer
crf = CRF(n_tags) # CRF layer
out = crf(model) # output
model = Model(input, out)
# 恢复权重
save_load_utils.load_all_weights(model, filepath="result/bilstm-crf.h5")
p = model.predict(np.array([x_test_sent[0]]))
p = np.argmax(p, axis=-1)
print("{:15}||{}".format("Word", "Prediction"))
print(30 * "=")
for w, pred in zip(test_sentence, p[0]):
print("{:15}: {:5}".format(w, tags[pred]))
def test_save_and_load_all_weights():
'''
Test save_all_weights and load_all_weights. Save and load optimizer and model weights but not configuration.
'''
def make_model():
_x = Input((10, ))
_y = Dense(10)(_x)
_m = Model(_x, _y)
_m.compile('adam', 'mean_squared_error')
_m._make_train_function()
return _m
# make a model
m1 = make_model()
# set weights
w1 = m1.layers[1].kernel # dense layer
w1value = K.get_value(w1)
w1value[0, 0:4] = [1, 3, 3, 7]
K.set_value(w1, w1value)
# set optimizer weights
ow1 = m1.optimizer.weights[3] # momentum weights
ow1value = K.get_value(ow1)
ow1value[0, 0:3] = [4, 2, 0]
K.set_value(ow1, ow1value)
# save all weights
save_all_weights(m1, 'model.h5')
# new model
m2 = make_model()
# load all weights
load_all_weights(m2, 'model.h5')
# check weights
assert_allclose(K.get_value(m2.layers[1].kernel)[0, 0:4], [1, 3, 3, 7])
# check optimizer weights
assert_allclose(K.get_value(m2.optimizer.weights[3])[0, 0:3], [4, 2, 0])
os.remove('model.h5')
def load_pretrained_model(self,
path_model,
layers=2,
rec_dropout=[0.2, 0.2],
rnn_dropout=[0.5, 0.5],
units=[400, 400],
lr=0.001,
train_emb=False):
"""
Method that loads a pretrained CRF on top of BiLSTM model. However, the loading is a bit tricky.
To successfully load the model you need to do a naive train at first in order to load the model afterwards.
"""
print("BiLSTM with CRF...")
self.create_model(layers, rec_dropout, rnn_dropout, units, lr,
train_emb)
# model.summary()
# define callbacks
print("Dummy train to init model...")
early_stopping = EarlyStopping(monitor="val_loss",
min_delta=0.001,
patience=3,
verbose=1)
callbacks_list = [early_stopping]
# model training with batch normalization
hist = self.model.fit(np.random.randint(low=2, high=105, size=(1, 36)),
np.zeros(shape=(1, 36, 2)))
print("Loading model...")
# Load model
save_load_utils.load_all_weights(self.model, path_model)
print("Done!")
def load_model(self, filename):
input = Input(shape=(self.max_len, ))
embed = Embedding(input_dim=self.num_word + 1,
output_dim=64,
input_length=self.max_len,
dropout=0.2,
name='embed')(input)
bilstm = Bidirectional(
LSTM(32, dropout_W=0.1, dropout_U=0.1,
return_sequences=True))(embed)
bilstm_d = Dropout(0.1)(bilstm)
half_window_size = 2
paddinglayer = ZeroPadding1D(padding=half_window_size)(embed)
conv = Conv1D(nb_filter=50,
filter_length=(2 * half_window_size + 1),
border_mode='valid')(paddinglayer)
conv_d = Dropout(0.1)(conv)
dense_conv = TimeDistributed(Dense(50))(conv_d)
rnn_cnn_merge = concatenate([bilstm_d, dense_conv], axis=2)
dense = TimeDistributed(Dense(self.num_tag))(
rnn_cnn_merge) # softmax output layer
crf = CRF(self.num_tag, sparse_target=False)
out = crf(dense)
model = Model(input, out)
model.compile(optimizer="adam",
loss=crf.loss_function,
metrics=[crf.accuracy])
save_load_utils.load_all_weights(model,
filename,
include_optimizer=False)
return model
def testKerasModel(max_len, num_LSTM_Units, learning_rate, vector_dim,
num_docs, embedding_matrix, embeddingLayerFlag,
embeddingFlag, dropout, batch_size, epochs, X_Test, y_Test,
experiment):
model1, crf1 = createModelArchitecture(max_len, num_LSTM_Units, vector_dim,
num_docs, embedding_matrix, dropout)
model1.compile(loss=crf1.loss_function,
optimizer="rmsprop",
metrics=[crf1.accuracy])
print("Model Architecture Created")
print("Loading Model")
modelName = 'KerasModel' + '_lstm' + str(num_LSTM_Units) + '_lr' + str(
learning_rate) + '_dropOut' + str(dropout) + '_bSize' + str(
batch_size) + '_epochs' + str(
epochs
) + '_' + embeddingLayerFlag + '_' + embeddingFlag + '_' + str(
experiment) + 'exp.h5'
save_load_utils.load_all_weights(model1,
path + modelName,
include_optimizer=False)
print("Model Loaded, Testing...")
summaryResult, percCorrectSeqPred, editDistance, editDistanceWithSwap = evaluateModel(
model1, X_Test, y_Test)
print("Percentage of Correctly Predicted Sequences :: ",
percCorrectSeqPred)
print("Average Edit Distance :: ", editDistance)
print("Average Edit Distance with swaps allowed :: ", editDistanceWithSwap)
print(summaryResult)
def load(self, path):
"""
Load model weights
Args:
path (str): path to load model from
"""
save_load_utils.load_all_weights(self.model, path, include_optimizer=False)
def load_model(model_path):
from keras_contrib.utils import save_load_utils
model = Model().model
save_load_utils.load_all_weights(model,
model_path,
include_optimizer=False)
return model
def load_actor(self, timestamp, name):
path = os.path.join(r'./ExperimentResults', timestamp + '_' + name,
name + '.model')
if (os.path.isfile(path)):
save_load_utils.load_all_weights(self.model, path)
logger.info('Weights from ' + path + ' found and loaded')
else:
logger.info('Weights from ' + path +
' could NOT be found and loaded')
def _load_keras_model(self, path, model=None): with open(os.path.abspath(path + '.json'), 'r') as jf: json_model = jf.read() if model is None: model = model_from_json(json_model) # model.summary() # print(model.get_weights()[0]) try: save_load_utils.load_all_weights(model, os.path.abspath(path + '.hdf5')) except KeyError: model.load_weights(os.path.abspath(path + '.hdf5')) # print(model.get_weights()[0]) return model
def load(self, file_path):
""" Loads a model saved locally. """
load_path = Path(file_path)
model_load_path = load_path.joinpath("KerasNER.model")
config_load_path = load_path.joinpath("KerasNER.config")
encoder_load_path = load_path.joinpath("encoder")
self.config.load(config_load_path)
if self.config.get_parameter("use_crf"):
save_load_utils.load_all_weights(self.model, str(model_load_path))
else:
self.model = load_model(str(model_load_path))
self.encoder.load(encoder_load_path)
return self
def load_trained_model(self, name):
if self.verbose:
print("\n[INFO] Loading trained model from '" + name + "'")
print(
"Performing dummy training in order to be able to load weights:\n"
)
self.model.fit(self.X_train[0:5],
np.array(self.y_train[0:5]),
epochs=1)
save_load_utils.load_all_weights(self.model, name)
self.model.compile(optimizer=self.optimizer,
loss=self.loss,
metrics=[crf_accuracy])
if self.verbose: print("[INFO] Model is loaded.\n")
def load_model(self, filename):
input = Input(shape=(self.max_len, ))
model = Embedding(input_dim=self.num_word + 1,
output_dim=20,
input_length=self.max_len,
mask_zero=True)(input)
model = Dropout(0.1)(model)
model = Bidirectional(
LSTM(units=50, return_sequences=True,
recurrent_dropout=0.1))(model)
model = TimeDistributed(Dense(50, activation="relu"))(
model) # softmax output layer
crf = CRF(self.num_tag)
out = crf(model)
model = Model(input, out)
model.compile(optimizer="rmsprop",
loss=crf.loss_function,
metrics=[crf.accuracy])
save_load_utils.load_all_weights(model,
filename,
include_optimizer=False)
return model
def load_resources():
print("Loading embeddings...")
embeddings = {
'en':
KeyedVectors.load_word2vec_format('data/wiki.multi.en.vec.txt',
binary=False),
'es':
KeyedVectors.load_word2vec_format('data/wiki.multi.es.vec.txt',
binary=False),
'de':
KeyedVectors.load_word2vec_format('data/wiki.multi.de.vec.txt',
binary=False),
'it':
KeyedVectors.load_word2vec_format('data/wiki.multi.it.vec.txt',
binary=False)
}
print("Loading model...")
model = create_model(num_classes, num_features)
save_load_utils.load_all_weights(model,
'models/full_train.h5',
include_optimizer=False)
return embeddings, model
def get_model(self, filename):
model = self.train()
save_load_utils.load_all_weights(model, filename)
return model
sents = line.split('。')
if len(sents) == 1:
test_sentences.extend(sents)
else:
for s in sents:
if s != '':
test_sentences.append(s.strip() + '。')
print(test_sentences)
# Reconstruct trained tokenizer
with open('./data/tokenizer', 'rb') as f:
tokenizer = pickle.load(f)
# Load built model architecture and trained weights
with open('./data/model_architecture.json', 'r') as f:
model = model_from_json(f.read(), custom_objects={'CRF': CRF})
save_load_utils.load_all_weights(model, './data/model_weights.hdf5')
# test_tokens = tokenizer.texts_to_sequences(test_sentences)
# Deal with infrequent characters
test_tokens = [tokenizer.texts_to_sequences(i) for i in test_sentences]
for i in range(len(test_tokens)):
for j in range(len(test_tokens[i])):
if test_tokens[i][j]:
test_tokens[i][j] = test_tokens[i][j][0]
else:
test_tokens[i][
j] = tokenizer.num_words # tokenizer.word_index.get('UNK') # limit_size?
test_tokens_pad = sequence.pad_sequences(test_tokens,
maxlen=MAX_LEN,
def load_model(filename):
model = build_model()
save_load_utils.load_all_weights(model, filename)
return model
def load_embedding_bilstm2_crf_model(filename, NUM_CLASS, embeddings_matrix, input_length):
model = build_embedding_bilstm2_crf_model(NUM_CLASS, embeddings_matrix, input_length)
save_load_utils.load_all_weights(model, filename, include_optimizer=False)
return model
def load(self, path):
save_load_utils.load_all_weights(self.model, path, include_optimizer=False)
def predict(model_path,
test_data_path,
result_file,
wv_for_score_model,
score_clf,
window,
word_vector,
is_model_path=False):
test_x, test_docs = get_test_data(test_data_path, FLAGS.vocab_dir,
FLAGS.max_len)
file_list = ['../dictionary/trainSenDict', '../dictionary/theme1117.txt']
dictionary_list = get_dict(file_list)
dict_index = matrix_index(test_docs, dictionary_list, FLAGS.max_len)
print("test data is ok!")
if (is_model_path):
model_object = dnnModel(FLAGS)
model = model_object.build_bilstm_model(word_vector)
# model = model_object.build_crf_model(word_vector)
save_load_utils.load_all_weights(model, model_path)
# model = load_model(model)
else:
model = model_path
print("model have loaded!")
predictArr = model.predict([test_x, dict_index])
predict = np.argmax(predictArr, axis=-1)
flag = 'word'
o = open(result_file, 'w', encoding='utf8')
for i in range(len(test_docs)):
sentence = test_docs[i]
sentence_len = len(sentence)
cur_predict = predict[i][:sentence_len]
predict_theme = []
predict_senti = []
j = 0
while (j < len(cur_predict)):
cur_label = cur_predict[j]
if (cur_label == 0):
j += 1
continue
elif (cur_label == 4):
predict_senti.append([sentence[j], j,
j]) ## word, start_index, end_index
j += 1
elif (cur_label == 8):
predict_theme.append([sentence[j], j, j])
j += 1
elif (cur_label == 1):
senti_start = j
j += 1
while (j < len(cur_predict)):
if (cur_predict[j] == 3):
predict_senti.append(
[sentence[senti_start:j + 1], senti_start, j])
j += 1
break
elif (cur_predict[j] == 2):
j += 1
else:
break
elif (cur_label == 5):
theme_start = j
j += 1
while (j < len(cur_predict)):
if (cur_predict[j] == 7):
predict_theme.append(
[sentence[theme_start:j + 1], theme_start, j])
j += 1
break
elif (cur_predict[j] == 6):
j += 1
else:
break
else:
j += 1
#######################################################rule match method################################################
result = []
for senti_tuple in predict_senti:
senti_word = senti_tuple[0]
sen_vec = sentiment2vec(senti_word, wv_for_score_model, Flag=flag)
sen_vec = np.array([sen_vec])
score = str(score_clf.predict(sen_vec)[0])
senti_start = senti_tuple[1]
senti_end = senti_tuple[2]
first = True
is_match = False
for theme_tuple in predict_theme:
if (abs(senti_start - theme_tuple[2]) < window
or abs(senti_end - theme_tuple[1]) < window):
# if (min(abs(senti_start - theme_tuple[2]), abs(senti_end - theme_tuple[1])) < min_distance):
if (not first and theme_tuple[1] > senti_start):
result.pop()
result.append([theme_tuple[0], senti_word, score])
is_match = True
first = False
if (not is_match):
result.append(['NULL', senti_word, score])
cur_predict = [str(item) for item in cur_predict]
o.write(str(result)[1:-1] + '\t' + ''.join(cur_predict) + '\n')
o.close()
def load_embedding_bilstm2_crf_model(filename, VOCAB_SIZE, NUM_CLASS,
TIME_STAMPS):
model = build_embedding_lstm2_crf_model(VOCAB_SIZE, NUM_CLASS, TIME_STAMPS)
save_load_utils.load_all_weights(model, filename, include_optimizer=False)
return model
# history = model.fit(X_tr, np.array(y_tr), batch_size=32, epochs=5, validation_split=0.1, verbose=1)
# #
# save_load_utils.save_all_weights(model, 'lstm_crf.model', include_optimizer=False)
#
# hist = pd.DataFrame(history.history)
#
#
# plt.style.use("ggplot")
# plt.figure(figsize=(12,12))
# plt.plot(hist["acc"])
# plt.plot(hist["val_acc"])
# plt.show()
save_load_utils.load_all_weights(model, 'lstm_crf.model')
test_pred = model.predict(X_te, verbose=2)
idx2tag = {i: w for w, i in tag2idx.items()}
# print(idx2tag)
print(test_pred)
def pred2label(pred):
out = []
for pred_i in pred:
out_i = []
for p in pred_i:
p_i = np.argmax(p)
out_i.append(idx2tag[p_i].replace("PAD", "O"))
def load_model(filename, model):
save_load_utils.load_all_weights(model, filename)
def load_model():
embedding_size = 100
word_vocabulary_size = dataset.vocab_size
character_vocab_size = dataset.char_vocab_size
character_emb_size = 25
char_lstm_hidden_dims = 25
intent_labels = dataset.intent_size
tagging_lstm_hidden_dims = 100
tag_labels = dataset.label_vocab_size
words_input = Input(shape=(sentence_length, ), name='words_input')
embedding_layer = Embedding(word_vocabulary_size,
embedding_size,
input_length=sentence_length,
trainable=True,
name='word_embedding_layer')
word_embeddings = embedding_layer(words_input)
word_embeddings = Dropout(0.5)(word_embeddings)
word_chars_input = Input(shape=(sentence_length, word_length),
name='word_chars_input')
char_embedding_layer = Embedding(character_vocab_size,
character_emb_size,
input_length=word_length,
name='char_embedding_layer')
char_embeddings = TimeDistributed(char_embedding_layer)(word_chars_input)
char_embeddings = TimeDistributed(
Bidirectional(LSTM(char_lstm_hidden_dims)))(char_embeddings)
char_embeddings = Dropout(0.5)(char_embeddings)
shared_bilstm_layer = Bidirectional(
LSTM(100, return_sequences=True, return_state=True))
shared_lstm_out = shared_bilstm_layer(word_embeddings)
shared_lstm_y = shared_lstm_out[:1][0] # save y states of the LSTM layer
states = shared_lstm_out[1:]
hf, cf, hb, cb = states # extract last hidden states
h_state = concatenate([hf, hb], axis=-1) # concatenate last states
intent_out = Dense(intent_labels,
activation='softmax',
name='intent_classifier_output')(h_state)
combined_features = concatenate([shared_lstm_y, char_embeddings], axis=-1)
tagging_lstm = Bidirectional(
LSTM(tagging_lstm_hidden_dims,
return_sequences=True))(combined_features)
second_bilstm_layer = Dropout(0.5)(tagging_lstm)
crf = CRF(tag_labels, sparse_target=False)
labels_out = crf(second_bilstm_layer)
model = Model(inputs=[words_input, word_chars_input],
outputs=[intent_out, labels_out])
loss_f = {
'intent_classifier_output': 'categorical_crossentropy',
'crf_1': crf.loss_function
}
metrics = {
'intent_classifier_output': 'categorical_accuracy',
'crf_1': crf.accuracy
}
model.compile(loss=loss_f, optimizer='adam', metrics=metrics)
model_name = 'my_model'
print('Loading model weights')
save_load_utils.load_all_weights(model,
model_name,
include_optimizer=False)
return model
def load_embedding_bilstm2_crf_model(filename, VOCAB_SIZE):
model = build_bilstm_crf_model(VOCAB_SIZE)
# json_string = model.to_json()
# model = model_from_json(json_string)
save_load_utils.load_all_weights(model, filename, include_optimizer=False)
return model
def restore_model(self, filepath):
save_load_utils.load_all_weights(self.model, filepath)
config.gpu_options.allow_growth = True
session = tf.Session(config=config)
model = Sequential()
model.add(
Embedding(input_dim=4466,
output_dim=64,
input_length=MAX_TEXT_LENGTH,
trainable=False,
mask_zero=True))
model.add(
Bidirectional(LSTM(64, return_sequences=True, recurrent_dropout=0.3)))
model.add(Dense(7))
crf = CRF(7)
model.add(crf)
model.compile(optimizer=ks.optimizers.Adadelta(),
loss=crf.loss_function,
metrics=[crf.accuracy])
model.summary()
word_tokenizer = load_obj('model/word_tokenizer.pickle')
index_pos = load_obj('model/index_pos.pickle')
save_load_utils.load_all_weights(model,
r'model/ner_250epoch_weights.h5',
include_optimizer=False)
to_test = '琪斯美是日本的“东方project”系列弹幕游戏及其衍生作品的登场角色之一。'
ner_ret = test_sentences(to_test)
pretty_ner(to_test, ner_ret)
def TryLoadModel(self):
tempModel = self.constructModel()
save_load_utils.load_all_weights(tempModel, 'week4.h5')
# load 进来模型紧接着就执行一次 predict 函数
print('test train...')
bilstm_model.predict(np.zeros((1, 50)))
input = Input(shape=(max_len,))
bilstm_crf_model = Embedding(input_dim=n_words + 1, output_dim=20,
input_length=max_len, mask_zero=True)(input) # 20-dim embedding
bilstm_crf_model = Bidirectional(LSTM(units=50, return_sequences=True,
recurrent_dropout=0.1))(bilstm_crf_model) # variational biLSTM
bilstm_crf_model = TimeDistributed(Dense(50, activation="relu"))(bilstm_crf_model) # a dense layer as suggested by neuralNer
crf = CRF(n_tags) # CRF layer
out = crf(bilstm_crf_model) # output
bilstm_crf_model = Model(input, out)
save_load_utils.load_all_weights(bilstm_crf_model, filepath="result/bilstm-crf.h5")
bilstm_crf_model.predict(np.zeros((1, 50)))
print('test done.')
# 测试数据
def build_input(test_sentence):
test_sentence =test_sentence.split(" ")
x_test_sent = pad_sequences(sequences=[[word2idx.get(w, 0) for w in test_sentence]],
padding="post", value=0, maxlen=max_len)
return test_sentence,x_test_sent
def bilstm_predcit(model,test_sentence,x_test_sent):
pred = model.predict(np.array([x_test_sent[0]]))
def load_embedding_bilstm2_crf_model(filename):
model = build_embedding_bilstm2_crf_model()
save_load_utils.load_all_weights(model, filename)
return model
def test_exist(self, glove, test_data, test_labels):
# get word embeddings
utils = wordUtils.Utils()
if glove:
# use glove
self.words_list, self.embedding_matrix = utils.load_glove()
unword_n = len(self.words_list)
else:
self.words_list, self.embedding_matrix = utils.load_word2vec()
unword_n = len(self.words_list)
# get the training corpus
cr = corpusreader.CorpusReader(test_data, test_labels)
corpus = cr.trainseqs
# get the number of the embedding
for idx in range(len(corpus)):
words = corpus[idx]['tokens']
words_id = []
for i in words:
# get the number of the embedding
try:
# the index of the word in the embedding matrix
index = self.words_list.index(i)
except ValueError:
# use the embedding full of zeros to identify an unknown word
index = unword_n
# the index of the word in the embedding matrix
words_id.append(index)
corpus[idx]['embs'] = words_id
input = Input(shape=(None,))
el = Embedding(len(self.words_list) + 1, 200, weights=[self.embedding_matrix], trainable=False)(input)
bl1 = Bidirectional(LSTM(128, return_sequences=True, recurrent_dropout=0.5, dropout=0.5),
merge_mode="concat",
name="lstm1")(el)
bl2 = Bidirectional(LSTM(64, return_sequences=True, recurrent_dropout=0.5, dropout=0.5),
merge_mode="concat",
name="lstm2")(bl1)
bl3 = Bidirectional(LSTM(64, return_sequences=True, recurrent_dropout=0.5, dropout=0.5),
merge_mode="concat",
name="lstm3")(bl2)
model = TimeDistributed(Dense(50, activation="relu"))(bl3) # a dense layer as suggested by neuralNer
crf = CRF(self.lab_len) # CRF layer
out = crf(model) # output
model = Model(input, out)
model.compile(optimizer="rmsprop", loss=crf.loss_function, metrics=[crf.accuracy])
model.summary()
save_load_utils.load_all_weights(model, 'word_models/words_glove_multiLSTM31.h5')
for doc in corpus:
doc_arr = doc['embs']
p = model.predict(np.array([doc_arr]))
p = np.argmax(p, axis=-1)
position = 0
offsets = defaultdict(list)
counter = 0
# check if there are any mutations identified
# {'O': 0, 'B-E': 1, 'I-E': 2, 'E-E': 3, 'S-E': 4}
B = False
last = 0
for idx in p[0]:
if idx == 1 and last == 1:
counter = counter + 1
offsets[counter].append(position)
B = True
elif idx == 1:
B = True
offsets[counter].append(position)
last = 1
elif idx == 2 and B:
offsets[counter].append(position)
last = 2
elif idx == 3 and B:
offsets[counter].append(position)
last = 3
B = False
counter = counter + 1
elif idx == 4:
offsets[counter].append(position)
counter = counter + 1
last = 4
else:
B = False
position = position + 1
# open file to write
textid = str(doc['textid'])
abstract = open("words-silver/" + textid + ".a1", 'w')
for i in offsets:
word = offsets.get(i)
size = len(word)
if size == 1:
s = word[0] # just one; singleton
abstract.write(str(doc['tokstart'][s]) + "\t")
abstract.write(str(doc['tokend'][s]) + "\t")
abstract.write(str(doc['tokens'][s]) + "\n")
elif size > 1:
s = word[0] # start of token
e = word[-1] # end of token
abstract.write(str(doc['tokstart'][s]) + "\t")
abstract.write(str(doc['tokend'][e]) + "\t")
token = ""
for c in word:
token = token + doc['tokens'][c]
abstract.write(str(token) + "\n")
def load(self, path):
save_load_utils.load_all_weights(self.model, path, include_optimizer=False)
def load_embedding_bilstm2_crf_model(filename):
model = build_embedding_bilstm2_crf_model()
save_load_utils.load_all_weights(model, filename)
return model
