def test_save_no_load(self):
mmt = self.mmt
for i in range(0, MINMAXTABLE_SIZE):
mmt.add_min(i, i)
mmt.add_max(i, MINMAXTABLE_SIZE-i)
mmt.save(self.filename)
mmt2 = khmer.new_minmax(MINMAXTABLE_SIZE)
# no load!
try:
for i in range(0, MINMAXTABLE_SIZE):
if mmt2.get_min(i) != mmt.get_min(i):
raise Exception # supposed to happen!
assert 0
except AssertionError:
raise
except Exception:
pass
try:
for i in range(0, MINMAXTABLE_SIZE):
if mmt2.get_max(i) != mmt.get_max(i):
raise Exception # supposed to happen!
assert 0
except AssertionError:
raise
except Exception:
pass
def test_save_no_load(self):
filename = utils.get_temp_filename('save')
mmt = self.mmt
for i in range(0, MINMAXTABLE_SIZE):
mmt.add_min(i, i)
mmt.add_max(i, MINMAXTABLE_SIZE - i)
mmt.save(filename)
mmt2 = khmer.new_minmax(MINMAXTABLE_SIZE)
# no load!
try:
for i in range(0, MINMAXTABLE_SIZE):
if mmt2.get_min(i) != mmt.get_min(i):
raise Exception # supposed to happen!
assert 0
except AssertionError:
raise
except Exception:
pass
try:
for i in range(0, MINMAXTABLE_SIZE):
if mmt2.get_max(i) != mmt.get_max(i):
raise Exception # supposed to happen!
assert 0
except AssertionError:
raise
except Exception:
pass
def test_merge_2(self):
mmt = self.mmt
mmt2 = khmer.new_minmax(MINMAXTABLE_SIZE)
mmt2.add_min(0, 2)
mmt2.add_max(0, 5)
mmt.merge(mmt2)
v = mmt.get_min(0)
assert v == 2, v
v = mmt.get_max(0)
assert v == 5, v
def test_merge_2(self):
mmt = self.mmt
mmt2 = khmer.new_minmax(MINMAXTABLE_SIZE)
mmt2.add_min(0, 2)
mmt2.add_max(0, 5)
mmt.merge(mmt2)
v = mmt.get_min(0)
assert v == 2, v
v = mmt.get_max(0)
assert v == 5, v
def test_saveload(self):
mmt = self.mmt
for i in range(0, MINMAXTABLE_SIZE):
mmt.add_min(i, i)
mmt.add_max(i, MINMAXTABLE_SIZE-i)
mmt.save(self.filename)
mmt2 = khmer.new_minmax(0)
mmt2.load(self.filename)
for i in range(0, MINMAXTABLE_SIZE):
assert mmt.get_min(i) == mmt2.get_min(i)
assert mmt.get_min(i) == i
assert mmt.get_max(i) == mmt2.get_max(i)
assert mmt.get_max(i) == MINMAXTABLE_SIZE - i
def test_saveload(self):
filename = utils.get_temp_filename('save')
mmt = self.mmt
for i in range(0, MINMAXTABLE_SIZE):
mmt.add_min(i, i)
mmt.add_max(i, MINMAXTABLE_SIZE - i)
print mmt
print 'saving to:', filename
mmt.save(filename)
mmt2 = khmer.new_minmax(0)
print 'mm2'
print 'loading from:', filename
mmt2.load(filename)
for i in range(0, MINMAXTABLE_SIZE):
assert mmt.get_min(i) == mmt2.get_min(i)
assert mmt.get_min(i) == i
assert mmt.get_max(i) == mmt2.get_max(i)
assert mmt.get_max(i) == MINMAXTABLE_SIZE - i
def test_saveload(self):
filename = utils.get_temp_filename('save')
mmt = self.mmt
for i in range(0, MINMAXTABLE_SIZE):
mmt.add_min(i, i)
mmt.add_max(i, MINMAXTABLE_SIZE-i)
print mmt
print 'saving to:', filename
mmt.save(filename)
mmt2 = khmer.new_minmax(0)
print 'mm2'
print 'loading from:', filename
mmt2.load(filename)
for i in range(0, MINMAXTABLE_SIZE):
assert mmt.get_min(i) == mmt2.get_min(i)
assert mmt.get_min(i) == i
assert mmt.get_max(i) == mmt2.get_max(i)
assert mmt.get_max(i) == MINMAXTABLE_SIZE - i
def __init__(self):
self.mmt = khmer.new_minmax(MINMAXTABLE_SIZE)
def __init__(self):
self.mmt = khmer.new_minmax(MINMAXTABLE_SIZE)
def __init__(self):
self.mmt = khmer.new_minmax(MINMAXTABLE_SIZE)
self.tempdir = tempfile.mkdtemp()
self.filename = os.path.join(self.tempdir, 'tst')
