def test_edit_none_participant(self):
self.mock_login_admin()
barcode = '000023125' # current survey_id = "a4f1061f5bac9ae3"
details = db.getAGBarcodeDetails(barcode)
payload = {
'barcode': barcode,
'ag_kit_id': details['ag_kit_id'],
'site_sampled': details['site_sampled'],
'sample_date': details['sample_date'],
'sample_time': details['sample_time'],
'participant_name': details['participant_name'],
'notes': details['notes'],
'environment_sampled': details['environment_sampled'],
'refunded': details['refunded'] or 'N',
'withdrawn': details['withdrawn'] or 'N'
}
old_sourcename = payload['participant_name']
payload['participant_name'] = None
response = self.post('/ag_edit_barcode/', payload)
obs_details = db.getAGBarcodeDetails(barcode)
obs_surveys = db.get_barcode_survey(barcode)
# revert to old participant_name to leave a clean DB
payload['participant_name'] = old_sourcename
response = self.post('/ag_edit_barcode/', payload)
self.assertEqual(response.code, 200)
self.assertIsNone(obs_details['participant_name'])
self.assertIsNone(obs_surveys)
self.assertIsNotNone(db.get_barcode_survey(barcode))
def get_ag_details(self, barcode):
ag_details = db.getAGBarcodeDetails(barcode)
_, failures = db.pulldown([barcode], [])
if len(ag_details) == 0 and failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata: %s" % failures[barcode]
elif len(ag_details) > 0:
for col, val in ag_details.iteritems():
if val is None:
ag_details[col] = ''
ag_details['other_checked'] = ''
ag_details['overloaded_checked'] = ''
ag_details['moldy_checked'] = ''
ag_details['login_user'] = ag_details['name']
if ag_details['moldy'] == 'Y':
ag_details['moldy_checked'] = 'checked'
if ag_details['overloaded'] == 'Y':
ag_details['overloaded_checked'] = 'checked'
if ag_details['other'] == 'Y':
ag_details['other_checked'] = 'checked'
survey_id = db.get_barcode_survey(barcode)
# it has all sample details
# (sample time, date, site)
if failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata: %s" % failures[barcode]
ag_details['email_type'] = "-1"
elif (survey_id is None and ag_details['environment_sampled']) \
or survey_id in survey_type:
div_id = "verified"
message = "All good"
ag_details['email_type'] = "1"
else:
# should never get here (this would happen
# if the metadata
# pulldown returned more than one row for a
# single barcode)
div_id = "md_pulldown_error"
message = ("This barcode has multiple entries "
"in the database, which should "
"never happen. Please notify "
"someone on the database crew.")
ag_details['email_type'] = "-1"
else:
# TODO: Stefan Janssen: I cannot see how this case should ever be
# reached, since failures will be set to 'Unknown reason' at the
# outmost.
div_id = "not_assigned"
message = ("In American Gut project group but no "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
return div_id, message, ag_details
def get_ag_details(self, barcode):
ag_details = db.getAGBarcodeDetails(barcode)
_, failures = db.pulldown([barcode], [])
if len(ag_details) == 0 and failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata: %s" % failures[barcode]
elif len(ag_details) > 0:
for col, val in ag_details.iteritems():
if val is None:
ag_details[col] = ''
ag_details['other_checked'] = ''
ag_details['overloaded_checked'] = ''
ag_details['moldy_checked'] = ''
ag_details['login_user'] = ag_details['name']
if ag_details['moldy'] == 'Y':
ag_details['moldy_checked'] = 'checked'
if ag_details['overloaded'] == 'Y':
ag_details['overloaded_checked'] = 'checked'
if ag_details['other'] == 'Y':
ag_details['other_checked'] = 'checked'
survey_id = db.get_barcode_survey(barcode)
# it has all sample details
# (sample time, date, site)
if failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata: %s" % failures[barcode]
ag_details['email_type'] = "-1"
elif (survey_id is None and ag_details['environment_sampled']) \
or survey_id in survey_type:
div_id = "verified"
message = "All good"
ag_details['email_type'] = "1"
else:
# should never get here (this would happen
# if the metadata
# pulldown returned more than one row for a
# single barcode)
div_id = "md_pulldown_error"
message = ("This barcode has multiple entries "
"in the database, which should "
"never happen. Please notify "
"someone on the database crew.")
ag_details['email_type'] = "-1"
else:
# TODO: Stefan Janssen: I cannot see how this case should ever be
# reached, since failures will be set to 'Unknown reason' at the
# outmost.
div_id = "not_assigned"
message = ("In American Gut project group but no "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
return div_id, message, ag_details
def get_ag_details(self, barcode):
ag_details = db.getAGBarcodeDetails(barcode)
if len(ag_details) > 0:
for col, val in ag_details.iteritems():
if val is None:
ag_details[col] = ''
ag_details['other_checked'] = ''
ag_details['overloaded_checked'] = ''
ag_details['moldy_checked'] = ''
ag_details['login_user'] = ag_details['name']
if ag_details['moldy'] == 'Y':
ag_details['moldy_checked'] = 'checked'
if ag_details['overloaded'] == 'Y':
ag_details['overloaded_checked'] = 'checked'
if ag_details['other'] == 'Y':
ag_details['other_checked'] = 'checked'
survey_id = db.get_barcode_survey(barcode)
_, failures = db.pulldown([barcode])
if not (ag_details['sample_date'] == ag_details['site_sampled'] ==
ag_details['sample_time'] == ''):
# it has all sample details
# (sample time, date, site)
if survey_id is None:
div_id = "not_assigned"
message = "Missing info"
ag_details['email_type'] = "0"
elif barcode in failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata"
ag_details['email_type'] = "-1"
elif survey_type[survey_id] == 'Human':
# and we can successfully retrieve sample
# metadata
div_id = "verified"
message = "All good"
ag_details['email_type'] = "1"
elif survey_type[survey_id] == 'Animal':
div_id = "verified_animal"
message = "All good"
ag_details['email_type'] = "1"
else:
# should never get here (this would happen
# if the metadata
# pulldown returned more than one row for a
# single barcode)
div_id = "md_pulldown_error"
message = ("This barcode has multiple entries "
"in the database, which should "
"never happen. Please notify "
"someone on the database crew.")
ag_details['email_type'] = "-1"
else:
div_id = "not_assigned"
message = ("In American Gut project group but No "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
else:
div_id = "not_assigned"
message = ("In American Gut project group but No "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
return div_id, message, ag_details
def get_ag_details(self, barcode):
ag_details = db.getAGBarcodeDetails(barcode)
if len(ag_details) > 0:
for col, val in ag_details.iteritems():
if val is None:
ag_details[col] = ''
ag_details['other_checked'] = ''
ag_details['overloaded_checked'] = ''
ag_details['moldy_checked'] = ''
ag_details['login_user'] = ag_details['name']
if ag_details['moldy'] == 'Y':
ag_details['moldy_checked'] = 'checked'
if ag_details['overloaded'] == 'Y':
ag_details['overloaded_checked'] = 'checked'
if ag_details['other'] == 'Y':
ag_details['other_checked'] = 'checked'
survey_id = db.get_barcode_survey(barcode)
_, failures = db.pulldown([barcode])
if not (ag_details['sample_date'] ==
ag_details['site_sampled'] ==
ag_details['sample_time'] == ''):
# it has all sample details
# (sample time, date, site)
if survey_id is None:
div_id = "not_assigned"
message = "Missing info"
ag_details['email_type'] = "0"
elif barcode in failures:
div_id = "no_metadata"
message = "Cannot retrieve metadata"
ag_details['email_type'] = "-1"
elif survey_type[survey_id] == 'Human':
# and we can successfully retrieve sample
# metadata
div_id = "verified"
message = "All good"
ag_details['email_type'] = "1"
elif survey_type[survey_id] == 'Animal':
div_id = "verified_animal"
message = "All good"
ag_details['email_type'] = "1"
else:
# should never get here (this would happen
# if the metadata
# pulldown returned more than one row for a
# single barcode)
div_id = "md_pulldown_error"
message = ("This barcode has multiple entries "
"in the database, which should "
"never happen. Please notify "
"someone on the database crew.")
ag_details['email_type'] = "-1"
else:
div_id = "not_assigned"
message = ("In American Gut project group but No "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
else:
div_id = "not_assigned"
message = ("In American Gut project group but No "
"American Gut info for barcode")
ag_details['email_type'] = "-1"
return div_id, message, ag_details