def __init__(
self,
simu_path,
paramtree=None,
measuretree=None,
load=False,
n_simu=100,
initial_plug="random",
parallel=True,
verbose=True,
):
self.verbose = verbose
if not self.verbose:
log.disabled = True
else:
log.disabled = False
self.simu_path = simu_path
if not load:
self.paramtree = paramtree
self.measuretree = measuretree
self.initial_plug = initial_plug
self.parallel = parallel
self.n_simu = n_simu
# Create a folder. Raise an exeception if it exists.
if os.path.isdir(self.simu_path):
raise FolderExistException("%s exists." % self.simu_path)
else:
os.makedirs(self.simu_path)
self.metaphases_path = []
self.simus_run = False
self.digits = int(math.log10(self.n_simu)) + 1
# Create metadata.h5 files
# with paramtree, measuretree, intial_plug,
# parallel, date/time, n_simu
store = pd.HDFStore(os.path.join(self.simu_path, "metadata.h5"))
store["params"] = paramtree.to_df()
store["measures"] = measuretree.to_df()
metadata = pd.Series(
{
"n_simu": self.n_simu,
"parallel": self.parallel,
"initial_plug": initial_plug,
"datetime": str(datetime.datetime.now()),
}
)
store["metadata"] = metadata
store.close()
else:
if not os.path.isdir(self.simu_path):
raise FolderNotExistException("%s does not exists." % self.simu_path)
store = pd.HDFStore(os.path.join(self.simu_path, "metadata.h5"))
self.paramtree = ParamTree(root=build_tree(store["params"]))
self.measuretree = ParamTree(root=build_tree(store["measures"]), adimentionalized=False)
self.n_simu = store["metadata"]["n_simu"]
self.parallel = store["metadata"]["parallel"]
self.initial_plug = store["metadata"]["initial_plug"]
store.close()
self.metaphases_path = []
self.digits = int(math.log10(self.n_simu)) + 1
for i in range(self.n_simu):
fname = "simu_%s.h5" % (str(i).zfill(self.digits))
self.metaphases_path.append(os.path.join(self.simu_path, fname))
self.simus_run = True
def __init__(self, multi_pool_path,
parameters=None,
trees=None,
paramtree=None,
measuretree=None,
load=False,
n_simu=10,
initial_plug='random',
parallel=True,
verbose=True):
self.verbose = verbose
if not self.verbose:
log.disabled = True
else:
log.disabled = False
self.multi_pool_path = multi_pool_path
if not load:
# Create a folder. Raise an exeception if it exists.
if os.path.isdir(self.multi_pool_path):
raise FolderExistException("%s exists." % self.multi_pool_path)
else:
os.makedirs(self.multi_pool_path)
self.parameters = parameters
self.paramtree = paramtree
self.measuretree = measuretree
self.n_simu = n_simu
self.parallel = parallel
self.initial_plug = initial_plug
self.trees = trees
self.simus_run = False
self._build_path()
store = pd.HDFStore(
os.path.join(self.multi_pool_path, "metadata.h5"))
store['simus_path'] = self.simus_path
store['params'] = paramtree.to_df()
store['measures'] = measuretree.to_df()
metadata = pd.Series({'n_simu': self.n_simu,
'parallel': self.parallel,
'initial_plug': initial_plug,
'datetime': str(datetime.datetime.now())})
store['metadata'] = metadata
store.close()
else:
if not os.path.isdir(self.multi_pool_path):
raise FolderNotExistException(
"%s does not exists." % self.multi_pool_path)
self.simus_run = True
store = pd.HDFStore(
os.path.join(self.multi_pool_path, "metadata.h5"))
self.simus_path = store['simus_path']
self.paramtree = ParamTree(root=build_tree(store['params']))
self.measuretree = ParamTree(root=build_tree(store['measures']),
adimentionalized=False)
self.n_simu = store['metadata']['n_simu']
self.parallel = store['metadata']['parallel']
self.initial_plug = store['metadata']['initial_plug']
store.close()
self.load_pools()
self.parameter_labels = self.simus_path.index.values
