def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = "python upload"
run.data_rows = data_rows
run.properties["RunFieldName"] = "Run Field Value"
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties["PropertyName"] = "Property Value"
self.service = MockSaveBatch()
self.expected_kwargs = {
"expected_args": [self.service.get_server_url()],
"data":
'{"assayId": 12345, "batches": [{"batchProtocolId": null, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
"headers": {
"Content-Type": "application/json"
},
"timeout": 300,
}
self.args = [mock_server_context(self.service), assay_id, batch]
def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = 'python upload'
run.data_rows = data_rows
run.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties['PropertyName'] = 'Property Value'
self.service = MockSaveBatch()
self.expected_kwargs = {
'expected_args': [self.service.get_server_url()],
'data':
'{"assayId": 12345, "batches": [{"batchProtocolId": 0, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"comment": null, "created": null, "createdBy": null, "dataInputs": [], "dataRows": [], "experiments": [], "filePathRoot": null, "materialInputs": [], "materialOutputs": [], "modified": null, "modifiedBy": null, "name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
'headers': {
'Content-type': 'application/json',
'Accept': 'text/plain'
},
'timeout': 300
}
self.args = [mock_server_context(self.service), assay_id, batch]
def setUp(self):
dataRows = []
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = dataRows
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
# batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
self.configs = configs.copy()
self.service = MockSaveBatch(**self.configs)
self.expected_kwargs = {
'expected_args': [self.service.get_server_url()]
, 'data': '{"assayId": 12345, "batches": [{"batchProtocolId": 0, "comment": null, "created": null, "createdBy": null, "lsid": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"comment": null, "created": null, "createdBy": null, "dataInputs": [], "dataRows": [], "experiments": [], "filePathRoot": null, "lsid": null, "materialInputs": [], "materialOutputs": [], "modified": null, "modifiedBy": null, "name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}'
, 'headers': {'Content-type': 'application/json', 'Accept': 'text/plain'}
}
self.args = [
server_context, assay_id, batch
]
from labkey.api_wrapper import APIWrapper
from labkey.experiment import Batch, Run
labkey_server = "localhost:8080"
project_name = "ModulesAssayTest" # Project folder name
context_path = "labkey"
api = APIWrapper(labkey_server, project_name, context_path, use_ssl=False)
assay_id = 3315 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
run_test = Run()
run_test.name = "python upload"
run_test.data_rows = [
{
# ColumnName: Value
"SampleId": "Monkey 1",
"TimePoint": "2008/11/02 11:22:33",
"DoubleData": 4.5,
"HiddenData": "another data point",
},
{
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear",
},
from labkey.utils import create_server_context
from labkey.experiment import Batch, Run, load_batch, save_batch
labkey_server = 'localhost:8080'
project_name = 'ModulesAssayTest' # Project folder name
context_path = 'labkey'
server_context = create_server_context(labkey_server, project_name, context_path, use_ssl=False)
assay_id = 3315 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = [{
# ColumnName: Value
'SampleId': 'Monkey 1',
'TimePoint': '2008/11/02 11:22:33',
'DoubleData': 4.5,
'HiddenData': 'another data point'
}, {
'SampleId': 'Monkey 2',
'TimePoint': '2008/11/02 14:00:01',
'DoubleData': 3.1,
'HiddenData': 'fozzy bear'
}, {
'SampleId': 'Monkey 3',
'TimePoint': '2008/11/02 14:00:01',
"HiddenData": "another data point"
}, {
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear"
}, {
"SampleId": "Monkey 3",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 1.5,
"HiddenData": "jimbo"
}
]
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = dataRows
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
# Execute save api
RESULT = save_batch(server_context, assay_id, batch)
# RESULT = save_batches(server_context, assay_id, [batch1, batch2])
print(RESULT.id)
{
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear"
},
{
"SampleId": "Monkey 3",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 1.5,
"HiddenData": "jimbo"
}
]
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = dataRows
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
# Execute save api
RESULT = save_batch(server_context, assay_id, batch)
# RESULT = save_batches(server_context, assay_id, [batch1, batch2])
print(RESULT.id)
#
from labkey.api_wrapper import APIWrapper
from labkey.experiment import Batch, Run
labkey_server = "localhost:8080"
project_name = "assays" # Project folder name
context_path = "labkey"
api = APIWrapper(labkey_server, project_name, context_path, use_ssl=False)
assay_id = 310 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
run_test = Run()
run_test.name = "python upload"
run_test.data_rows = [
{
# ColumnName: Value
"ParticipantId": "1234",
"VisitId": 111,
"WellLocation": "A1",
},
{
"ParticipantId": "5678",
"VisitId": 222,
"WellLocation": "B11"
},
{
"ParticipantId": "9123",
labkey_server = 'localhost:8080'
project_name = 'assays' # Project folder name
context_path = 'labkey'
server_context = create_server_context(labkey_server,
project_name,
context_path,
use_ssl=False)
assay_id = 310 # provide one from your server
###################
# Save an Assay batch
###################
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = [
{
# ColumnName: Value
'ParticipantId': '1234',
'VisitId': 111,
'WellLocation': 'A1'
},
{
'ParticipantId': '5678',
'VisitId': 222,
'WellLocation': 'B11'
},
{
'ParticipantId': '9123',