def test_get_hierarchy_grp_w_dset(hdf_dataset): # pylint:disable=redefined-outer-name
"""
OrderedDict describing HDF5 file hierarchy. Testing empty sets are NOT
returned. Keys are groups, values are datasets.
"""
filename, fid = hdf_dataset
# Passing fid
hierarchy = get_hierarchy(fid, fulldsetpath=True, grp_w_dset=True)
assert hierarchy == {'/':['base'],
'Group1':['Group1/ingroup1_1', 'Group1/ingroup1_2'],
'Group2':['Group2/ingroup2'],
'Group2/Group3':['Group2/Group3/ingroup3'],
'Group4/Group5/Group6':['Group4/Group5/Group6/ingroup6']
}
# Passing filename
hierarchy = get_hierarchy(filename, fulldsetpath=True, grp_w_dset=True)
assert hierarchy == {'/':['base'],
'Group1':['Group1/ingroup1_1', 'Group1/ingroup1_2'],
'Group2':['Group2/ingroup2'],
'Group2/Group3':['Group2/Group3/ingroup3'],
'Group4/Group5/Group6':['Group4/Group5/Group6/ingroup6']
}
def test_get_hierarchy_nopath(hdf_dataset): # pylint:disable=redefined-outer-name
"""
OrderedDict describing HDF5 file hierarchy. Testing with no full paths in
the dataset names. Keys are groups, values are datasets.
"""
filename, fid = hdf_dataset
# Passing fid
hierarchy = get_hierarchy(fid, fulldsetpath=False, grp_w_dset=False)
assert hierarchy == {'/':['base'],
'Group1':['ingroup1_1', 'ingroup1_2'],
'Group2':['ingroup2'],
'Group2/Group3':['ingroup3'],
'Group4':[],
'Group4/Group5':[],
'Group4/Group5/Group6':['ingroup6']
}
# Passing filename
hierarchy = get_hierarchy(filename, fulldsetpath=False, grp_w_dset=False)
assert hierarchy == {'/':['base'],
'Group1':['ingroup1_1', 'ingroup1_2'],
'Group2':['ingroup2'],
'Group2/Group3':['ingroup3'],
'Group4':[],
'Group4/Group5':[],
'Group4/Group5/Group6':['ingroup6']}
def populateGroups(self): # Qt-related pylint: disable=C0103
""" Populate dropdown box of group ui.comboBoxGroupSelect """
self.group_dset_dict = get_hierarchy(_os.path.join(self.path, self.filename),
grp_w_dset=HdfLoad.config['only_show_grp_w_dset'])
# Load Group dropdown box
self.ui.comboBoxGroupSelect.clear()
for count in self.group_dset_dict:
self.ui.comboBoxGroupSelect.addItem(count)
return [self.path, self.filename]