def test_basic(self):
opData = OpArrayCache( graph=self.graph )
opData.blockShape.setValue( self.testData.shape )
opData.Input.setValue( self.testData )
filepath = os.path.join( self._tmpdir, 'multipage.tiff' )
logger.debug( "writing to: {}".format(filepath) )
opExport = OpExportMultipageTiff(graph=self.graph)
opExport.Filepath.setValue( filepath )
opExport.Input.connect( opData.Output )
# Run the export
opExport.run_export()
opReader = OpInputDataReader( graph=self.graph )
opReader.FilePath.setValue( filepath )
# The reader assumes xyzc order.
# We have to transpose the data before we compare.
opReorderAxes = OpReorderAxes( graph=self.graph )
opReorderAxes.AxisOrder.setValue( self._axisorder )
opReorderAxes.Input.connect( opReader.Output )
readData = opReorderAxes.Output[:].wait()
logger.debug("Expected shape={}".format( self.testData.shape ) )
logger.debug("Read shape={}".format( readData.shape ) )
assert opReorderAxes.Output.meta.shape == self.testData.shape, "Exported files were of the wrong shape or number."
assert (opReorderAxes.Output[:].wait() == self.testData.view( numpy.ndarray )).all(), "Exported data was not correct"
# Cleanup
opReorderAxes.cleanUp()
opReader.cleanUp()
def test_basic(self):
opData = OpArrayCache(graph=self.graph)
opData.blockShape.setValue(self.testData.shape)
opData.Input.setValue(self.testData)
filepath = os.path.join(self._tmpdir, 'multipage.tiff')
logger.debug("writing to: {}".format(filepath))
opExport = OpExportMultipageTiff(graph=self.graph)
opExport.Filepath.setValue(filepath)
opExport.Input.connect(opData.Output)
# Run the export
opExport.run_export()
opReader = OpInputDataReader(graph=self.graph)
opReader.FilePath.setValue(filepath)
# The reader assumes xyzc order.
# We have to transpose the data before we compare.
opReorderAxes = OpReorderAxes(graph=self.graph)
opReorderAxes.AxisOrder.setValue(self._axisorder)
opReorderAxes.Input.connect(opReader.Output)
readData = opReorderAxes.Output[:].wait()
logger.debug("Expected shape={}".format(self.testData.shape))
logger.debug("Read shape={}".format(readData.shape))
assert opReorderAxes.Output.meta.shape == self.testData.shape, "Exported files were of the wrong shape or number."
assert (opReorderAxes.Output[:].wait() == self.testData.view(
numpy.ndarray)).all(), "Exported data was not correct"
# Cleanup
opReorderAxes.cleanUp()
opReader.cleanUp()
def _export_multipage_tiff(self):
self.progressSignal(0)
export_path = self.ExportPath.value
try:
opExport = OpExportMultipageTiff( parent=self )
opExport.Filepath.setValue( export_path )
opExport.Input.connect( self.Input )
# Run the export
opExport.run_export()
finally:
opExport.cleanUp()
self.progressSignal(100)
def test_basic(self):
opSource = OpArrayPiper(graph=self.graph)
opSource.Input.setValue(self.testData)
opData = OpArrayCache(graph=self.graph)
opData.blockShape.setValue(self.testData.shape)
opData.Input.connect(opSource.Output)
filepath = os.path.join(self._tmpdir, 'multipage.tiff')
logger.debug("writing to: {}".format(filepath))
opExport = OpExportMultipageTiff(graph=self.graph)
opExport.Filepath.setValue(filepath)
opExport.Input.connect(opData.Output)
# Run the export
opExport.run_export()
opReader = OpTiffReader(graph=self.graph)
try:
opReader.Filepath.setValue(filepath)
# Re-order before comparing
opReorderAxes = OpReorderAxes(graph=self.graph)
try:
opReorderAxes.AxisOrder.setValue(self._axisorder)
opReorderAxes.Input.connect(opReader.Output)
readData = opReorderAxes.Output[:].wait()
logger.debug("Expected shape={}".format(self.testData.shape))
logger.debug("Read shape={}".format(readData.shape))
assert opReorderAxes.Output.meta.shape == self.testData.shape, \
"Exported files were of the wrong shape or number."
assert (opReorderAxes.Output[:].wait() == self.testData.view( numpy.ndarray )).all(), \
"Exported data was not correct"
finally:
opReorderAxes.cleanUp()
finally:
opReader.cleanUp()
def test_basic(self):
opSource = OpArrayPiper(graph=self.graph)
opSource.Input.setValue( self.testData )
opData = OpArrayCache( graph=self.graph )
opData.blockShape.setValue( self.testData.shape )
opData.Input.connect( opSource.Output )
filepath = os.path.join( self._tmpdir, 'multipage.tiff' )
logger.debug( "writing to: {}".format(filepath) )
opExport = OpExportMultipageTiff(graph=self.graph)
opExport.Filepath.setValue( filepath )
opExport.Input.connect( opData.Output )
# Run the export
opExport.run_export()
opReader = OpTiffReader( graph=self.graph )
try:
opReader.Filepath.setValue( filepath )
# Re-order before comparing
opReorderAxes = OpReorderAxes( graph=self.graph )
try:
opReorderAxes.AxisOrder.setValue( self._axisorder )
opReorderAxes.Input.connect( opReader.Output )
readData = opReorderAxes.Output[:].wait()
logger.debug("Expected shape={}".format( self.testData.shape ) )
logger.debug("Read shape={}".format( readData.shape ) )
assert opReorderAxes.Output.meta.shape == self.testData.shape, \
"Exported files were of the wrong shape or number."
assert (opReorderAxes.Output[:].wait() == self.testData.view( numpy.ndarray )).all(), \
"Exported data was not correct"
finally:
opReorderAxes.cleanUp()
finally:
opReader.cleanUp()
def _export_multipage_tiff(self):
self.progressSignal(0)
export_path = self.ExportPath.value
try:
opExport = OpExportMultipageTiff(parent=self)
opExport.Filepath.setValue(export_path)
opExport.Input.connect(self.Input)
opExport.progressSignal.subscribe(self.progressSignal)
# Run the export
opExport.run_export()
finally:
opExport.cleanUp()
self.progressSignal(100)