def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Settings')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
sz = wx.GridBagSizer(5, 10)
#self.widgets['image directory'] = filebrowse.FileBrowseButton(self, -1)
presets = self.node.presetsclient.getPresetNames()
label = wx.StaticText(self, -1, 'Transform From:')
self.widgets['child preset'] = PresetChoice(self, -1)
self.widgets['child preset'].setChoices(presets)
sz.Add(label, (0, 0), (1, 1))
sz.Add(self.widgets['child preset'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Transform To:')
self.widgets['ancestor preset'] = PresetChoice(self, -1)
self.widgets['ancestor preset'].setChoices(presets)
sz.Add(label, (1, 0), (1, 1))
sz.Add(self.widgets['ancestor preset'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
self.widgets['jump filename'] = Entry(self, -1, chars=12)
label = wx.StaticText(self, -1, 'Image to Jump to:')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['jump filename'], (2, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [
sbsz,
]
def initialize(self):
szr = leginon.gui.wx.Reference.ScrolledSettings.initialize(self)
sb = wx.StaticBox(self, -1, 'Check Zero Loss Peak Shift')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['check preset'] = PresetChoice(self, -1)
presets = self.node.presets_client.getPresetNames()
self.widgets['check preset'].setChoices(presets)
szcheck = wx.GridBagSizer(5, 5)
szcheck.Add(wx.StaticText(self, -1, 'Use'), (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcheck.Add(self.widgets['check preset'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcheck.Add(wx.StaticText(self, -1, 'to check if needing realignment'), (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['threshold'] = FloatEntry(self, -1, min=0.0, allownone=False, chars=4, value='0.0')
szt = wx.GridBagSizer(5, 5)
szt.Add(wx.StaticText(self, -1, 'Start ALP if the image standard deviation is larger than'), (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szt.Add(self.widgets['threshold'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szt.Add(wx.StaticText(self, -1, 'times since last alignment'), (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz = wx.GridBagSizer(5, 5)
sz.Add(szcheck, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szt, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbsz.Add(sz, 0, wx.ALIGN_CENTER|wx.ALL, 5)
return [szr[0],sbsz]
def addRCTSettings(self): sb = wx.StaticBox(self, -1, 'RCT Options') sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL) sizer = wx.GridBagSizer(5, 4) bordersize = 3 label = wx.StaticText(self, -1, 'List of Tilts to Collect (in degrees)') sizer.Add(label, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL) self.widgets['tilts'] = Entry(self, -1, chars=15, style=wx.ALIGN_RIGHT) sizer.Add(self.widgets['tilts'], (0,2), (1,2), wx.ALL|wx.EXPAND|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Maximum Tilt Stepsize (in degrees)') sizer.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['stepsize'] = IntEntry(self, -1, chars=2, value='15') sizer.Add(self.widgets['stepsize'], (1,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Pause Between Steps') sizer.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['pause'] = FloatEntry(self, -1, chars=2, value='1') sizer.Add(self.widgets['pause'], (1,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) ''' label = wx.StaticText(self, -1, 'Min Feature Size') sizer.Add(label, (2,0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['minsize'] = FloatEntry(self, -1, chars=6, value='0.0') #sizer.Add(self.widgets['minsize'], (2,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Max Feature Size') sizer.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['maxsize'] = FloatEntry(self, -1, chars=6, value='0.0') sizer.Add(self.widgets['maxsize'], (2,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Median Filter (pixels)') sizer.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['medfilt'] = IntEntry(self, -1, chars=2, value='0') sizer.Add(self.widgets['medfilt'], (3,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) ''' label = wx.StaticText(self, -1, 'LowPass Filter (pixels)') sizer.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['lowfilt'] = IntEntry(self, -1, chars=2, value='0') sizer.Add(self.widgets['lowfilt'], (3,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Drift threshold') sizer.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['drift threshold'] = FloatEntry(self, -1, chars=6, value='0.0') sizer.Add(self.widgets['drift threshold'], (4,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Drift preset') sizer.Add(label, (4, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) presets = self.node.presetsclient.getPresetNames() self.widgets['drift preset'] = PresetChoice(self, -1) self.widgets['drift preset'].setChoices(presets) sizer.Add(self.widgets['drift preset'], (4,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) sbsz.Add(sizer, 0, wx.ALIGN_CENTER|wx.ALL, 2) return sbsz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Atlas')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
presets = self.node.presetsclient.getPresetNames()
self.widgets['preset'] = PresetChoice(self, -1)
self.widgets['preset'].setChoices(presets)
#self.widgets['label'] = Entry(self, -1)
self.widgets['center'] = {}
self.widgets['center']['x'] = FloatEntry(self, -1, chars=6)
self.widgets['center']['y'] = FloatEntry(self, -1, chars=6)
self.widgets['size'] = {}
self.widgets['size']['x'] = FloatEntry(self, -1, chars=6)
self.widgets['size']['y'] = FloatEntry(self, -1, chars=6)
gsz = wx.GridBagSizer(5, 10)
label = wx.StaticText(self, -1, 'x')
gsz.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'y')
gsz.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Center:')
gsz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
gsz.Add(self.widgets['center']['x'], (1, 1), (1, 1), wx.ALIGN_CENTER)
gsz.Add(self.widgets['center']['y'], (1, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'm')
gsz.Add(label, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Size:')
gsz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
gsz.Add(self.widgets['size']['x'], (2, 1), (1, 1), wx.ALIGN_CENTER)
gsz.Add(self.widgets['size']['y'], (2, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'm')
gsz.Add(label, (2, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
gsz.AddGrowableCol(0)
sz = wx.GridBagSizer(5, 10)
label = wx.StaticText(self, -1, 'Preset:')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['preset'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
#label = wx.StaticText(self, -1, 'Label:')
#sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
#sz.Add(self.widgets['label'], (1, 1), (1, 1),
# wx.ALIGN_CENTER_VERTICAL|wx.EXPAND)
#sz.Add(gsz, (2, 0), (1, 3), wx.ALIGN_CENTER|wx.EXPAND)
sz.Add(gsz, (1, 0), (1, 3), wx.ALIGN_CENTER | wx.EXPAND)
sz.AddGrowableCol(1)
sbsz.Add(sz, 1, wx.EXPAND | wx.ALL, 5)
return [sbsz]
def initialize(self):
sb = wx.StaticBox(self, -1, 'Baker')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
aftersb = wx.StaticBox(self, -1, 'After baking')
aftersbsz = wx.StaticBoxSizer(aftersb, wx.VERTICAL)
aftersz = wx.BoxSizer(wx.VERTICAL)
self.widgets['bypass'] = wx.CheckBox(self, -1, 'Bypass Baking')
self.widgets['preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['preset'].setChoices(presets)
self.widgets['total bake time'] = FloatEntry(self,
-1,
min=0.0,
allownone=False,
chars=6,
value='10.0')
self.widgets['manual aperture'] = wx.CheckBox(
self, -1, 'Wait for user before continue to next task')
self.widgets['emission off'] = wx.CheckBox(
self, -1, 'Turn emission off when done')
sz_bypass = wx.GridBagSizer(0, 0)
sz_bypass.Add(self.widgets['bypass'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_preset = wx.GridBagSizer(5, 5)
sz_preset.Add(wx.StaticText(self, -1, 'Use'), (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_preset.Add(self.widgets['preset'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_preset.Add(wx.StaticText(self, -1, 'to set the scope parameters'),
(0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_time = wx.GridBagSizer(5, 5)
sz_time.Add(wx.StaticText(self, -1, 'Take'), (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_time.Add(self.widgets['total bake time'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
sz_time.Add(
wx.StaticText(self, -1, 'seconds to move to the saved position'),
(0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
aftersz.Add(self.widgets['manual aperture'])
aftersz.Add(self.widgets['emission off'])
aftersbsz.Add(aftersz, wx.ALIGN_CENTER | wx.ALL)
sz = wx.GridBagSizer(5, 5)
sz.Add(sz_bypass, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(sz_preset, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(sz_time, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(aftersbsz, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def addBasicSettings(self): sz = wx.GridBagSizer(5, 10) # preset presets = self.node.presetsclient.getPresetNames() self.widgets['preset'] = PresetChoice(self, -1) self.widgets['preset'].setChoices(presets) label = wx.StaticText(self, -1, 'Preset:') sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) sz.Add(self.widgets['preset'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.EXPAND) # atlas label self.widgets['label'] = Entry(self, -1, allowspaces=False) label = wx.StaticText(self, -1, 'Label:') sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) sz.Add(self.widgets['label'], (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.EXPAND) # radius self.widgets['radius'] = FloatEntry(self, -1, min=0.0, chars=6) label = wx.StaticText(self, -1, 'Radius:') sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) #sz.Add(szradius, (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT) sz.Add(self.widgets['radius'], (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT) label = wx.StaticText(self, -1, 'm') sz.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) ''' # atlas max size self.widgets['max size'] = IntEntry(self, -1) label = wx.StaticText(self, -1, 'Max size:') sz.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) sz.Add(self.widgets['max size'], (3, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.EXPAND) # atlas max size self.widgets['max targets'] = IntEntry(self, -1) label = wx.StaticText(self, -1, 'Max targets:') sz.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) sz.Add(self.widgets['max targets'], (4, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.EXPAND) ''' return sz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Raster')
sbszraster = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszauto = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['raster spacing'] = IntEntry(self, -1, chars=4, min=1)
self.widgets['raster spacing asymm'] = IntEntry(self, -1, chars=4)
self.widgets['raster limit'] = IntEntry(self, -1, chars=4, min=1)
self.widgets['raster limit asymm'] = IntEntry(self, -1, chars=4)
self.widgets['raster angle'] = FloatEntry(self, -1, chars=4)
self.widgets['raster center on image'] = wx.CheckBox(self, -1, 'Center on image')
self.widgets['raster center x'] = IntEntry(self, -1, chars=4)
self.widgets['raster center y'] = IntEntry(self, -1, chars=4)
self.widgets['raster symmetric'] = wx.CheckBox(self, -1, '&Symmetric')
## auto raster
self.autobut = wx.Button(self, -1, 'Calculate spacing and angle using the following parameters:')
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
szauto = wx.GridBagSizer(5, 5)
szauto.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Preset')
szauto.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster preset'], (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap percent')
szauto.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster overlap'], (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
label = wx.StaticText(self, -1, 'Move Type')
szauto.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster movetype'], (3, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszauto.Add(szauto, 1, wx.EXPAND|wx.ALL,5)
szraster = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'XY symmetry:')
szraster.Add(label, (0,0), (1,1) , wx.ALIGN_CENTER_VERTICAL)
self.Bind(wx.EVT_CHECKBOX, self.onToggleSymm, self.widgets['raster symmetric'])
szraster.Add(self.widgets['raster symmetric'], (0,1), (1,2) , wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
self.widgets['raster symmetric'].SetMinSize((120,30))
label = wx.StaticText(self, -1, 'Spacing (x,y):')
szraster.Add(label, (1,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster spacing'], (1,1), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.Add(self.widgets['raster spacing asymm'], (1,2), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Num points (x,y):')
szraster.Add(label, (2,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster limit'], (2,1), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.Add(self.widgets['raster limit asymm'], (2,2), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.AddGrowableCol(1)
label = wx.StaticText(self, -1, 'Angle:')
szraster.Add(label, (3,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster angle'], (3,1), (1,2),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_CENTER_HORIZONTAL)
szraster.Add(self.widgets['raster center on image'], (4,0), (1,3),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_CENTER_HORIZONTAL)
self.Bind(wx.EVT_CHECKBOX, self.onCheckBox, self.widgets['raster center on image'])
label = wx.StaticText(self, -1, 'Center on x,y:')
szraster.Add(label, (5,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster center x'], (5,1), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster center y'], (5,2), (1,1), wx.ALIGN_CENTER_VERTICAL)
if self.widgets['raster center on image'].GetValue():
self.widgets['raster center x'].Enable(False)
self.widgets['raster center y'].Enable(False)
if self.widgets['raster symmetric'].GetValue():
self.widgets['raster spacing asymm'].Enable(False)
self.widgets['raster limit asymm'].Enable(False)
self.widgets['raster spacing asymm'].SetValue(None)
self.widgets['raster limit asymm'].SetValue(None)
else:
self.widgets['raster spacing asymm'].Enable(True)
self.widgets['raster limit asymm'].Enable(True)
sbszraster.Add(szraster, 1, wx.EXPAND|wx.ALL, 5)
self.btest = wx.Button(self, -1, 'Test')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.btest, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [sbszauto,sbszraster, szbutton]
def addSettings(self):
presets = self.node.presetsclient.getPresetNames()
self.widgets['preset'] = PresetChoice(self, -1)
self.widgets['preset'].setChoices(presets)
self.widgets['label'] = Entry(self, -1, allowspaces=False)
self.widgets['radius'] = FloatEntry(self, -1, min=0.0, chars=6)
self.widgets['max size'] = IntEntry(self, -1, chars=6)
self.widgets['max targets'] = IntEntry(self, -1, chars=6)
self.widgets['overlap'] = FloatEntry(self, -1, max=100.0, chars=6)
self.widgets['mosaic center'] = Choice(
self, -1, choices=['stage center', 'current position'])
self.widgets['ignore request'] = wx.CheckBox(
self, -1, 'Ignore Request to Make Targets from Others')
#szradius = wx.GridBagSizer(5, 5)
#szradius.Add(self.widgets['radius'], (0, 0), (1, 1),
# wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
#label = wx.StaticText(self, -1, 'meters')
#szradius.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz = wx.GridBagSizer(5, 10)
label = wx.StaticText(self, -1, 'Preset:')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['preset'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Label:')
sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['label'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Radius:')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
#sz.Add(szradius, (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
sz.Add(self.widgets['radius'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'm')
sz.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Max size:')
sz.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['max size'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Max targets:')
sz.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['max targets'], (4, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Overlap:')
sz.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['overlap'], (5, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, '%')
sz.Add(label, (5, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Mosaic Center:')
sz.Add(label, (6, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['mosaic center'], (6, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
sz.Add(self.widgets['ignore request'], (7, 0), (1, 3),
wx.ALIGN_CENTER_VERTICAL)
sz.AddGrowableCol(1)
return sz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszauto = wx.StaticBoxSizer(sb, wx.VERTICAL)
szoptions = wx.GridBagSizer(5, 5)
## auto raster
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
self.autobut = wx.Button(
self, -1,
'Calculate spacing and angle using the following parameters:')
szauto = wx.GridBagSizer(5, 5)
szauto.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Preset')
szauto.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster preset'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap percent')
szauto.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster overlap'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Move Type')
szauto.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster movetype'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sbszauto.Add(szauto, 1, wx.EXPAND | wx.ALL, 5)
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
## end of auto raster
szoptions.Add(sbszauto, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Spacing')
self.widgets['raster spacing'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['raster spacing'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Angle')
self.widgets['raster angle'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['raster angle'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szbutton = wx.GridBagSizer(5, 5)
self.bclear = wx.Button(self, -1, 'Clear Targets')
szbutton.Add(self.bclear, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_LEFT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onClearButton, self.bclear)
self.btest = wx.Button(self, -1, 'Test')
szbutton.Add(self.btest, (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(1)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [szoptions, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sbr = wx.StaticBox(self, -1, 'Target Raster')
sbszr = wx.StaticBoxSizer(sbr, wx.VERTICAL)
sbcalc = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszcalc = wx.StaticBoxSizer(sbcalc, wx.VERTICAL)
sblimit = wx.StaticBox(self, -1, 'Limiting Shape')
sbszlimit = wx.StaticBoxSizer(sblimit, wx.VERTICAL)
sz = wx.GridBagSizer(5, 10)
self.widgets['bypass'] = wx.CheckBox(self, -1, 'Bypass Filter')
targettypes = ['acquisition', 'preview']
self.widgets['target type'] = wx.Choice(self, -1, choices=targettypes)
self.widgets['user check'] = wx.CheckBox(
self, -1, 'Verify filter before submitting')
self.widgets['raster spacing'] = FloatEntry(self, -1, min=0, chars=6)
self.widgets['raster angle'] = FloatEntry(self, -1, chars=8)
self.widgets['raster offset'] = wx.CheckBox(
self, -1, 'offset by half an image every other row')
self.widgets['ellipse angle'] = FloatEntry(self, -1, chars=6)
self.widgets['ellipse a'] = FloatEntry(self, -1, min=0, chars=6)
self.widgets['ellipse b'] = FloatEntry(self, -1, min=0, chars=6)
shapetypes = ['ellipse', 'rectangle']
self.widgets['limiting shape'] = wx.Choice(self,
-1,
choices=shapetypes)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
self.autobut = wx.Button(
self, -1,
'Calculate spacing and angle using the following parameters:')
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
## filter
sztype = wx.GridBagSizer(0, 5)
sztype.Add(self.widgets['bypass'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Convoluting Target Type')
sztype.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztype.Add(self.widgets['target type'], (0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sztype.Add(self.widgets['user check'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sztype.AddGrowableCol(0)
sz.Add(sztype, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
## auto raster calculator
szcalc = wx.GridBagSizer(5, 5)
szcalc.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Preset for raster')
szcalc.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster preset'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap Percent')
szcalc.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster overlap'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Move Type')
szcalc.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster movetype'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sbszcalc.Add(szcalc, 0, wx.ALIGN_CENTER | wx.ALL, 5)
sz.Add(sbszcalc, (1, 0), (1, 2), wx.EXPAND)
## raster
szr = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Spacing')
szr.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster spacing'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'pixels in parent image')
szr.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Angle')
szr.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster angle'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'degrees')
szr.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster offset'], (2, 0), (1, 3),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Limit the raster by')
szr.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['limiting shape'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
## raster limiting ellipse
szlimit = wx.GridBagSizer(0, 5)
label = wx.StaticText(self, -1, 'Angle to a-axis')
szlimit.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse angle'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'degrees')
szlimit.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, '2 * a-axis (Width)')
szlimit.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse a'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'raster spacings')
szlimit.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, '2 * b-axis (Height)')
szlimit.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse b'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'raster spacings')
szlimit.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszlimit.Add(szlimit, 0, wx.ALIGN_CENTER | wx.ALL, 5)
szr.Add(sbszlimit, (4, 0), (1, 3), wx.EXPAND)
sbszr.Add(szr, 0, wx.ALIGN_CENTER | wx.ALL, 5)
sz.Add(sbszr, (2, 0), (1, 2), wx.EXPAND)
#test button
testbut = wx.Button(self, -1, 'test')
sz.Add(testbut, (3, 0), (1, 2), wx.ALIGN_RIGHT)
self.Bind(wx.EVT_BUTTON, self.onTestButton, testbut)
#sb = wx.StaticBox(self, -1, 'Target Filter')
#sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
#sbsz.Add(sz, 0, wx.ALIGN_CENTER|wx.ALL, 5)
return [sz]