class Databank:
'''
Connect to a Databank implementation
Responses in the form:
{
'status': status number of result,
'reason': reason behind status if error,
'results' : results from request
}
TODO:-
Check imputs are valid (e.g. valid names, file exists, etc)
Use dicts for results to make it easier to use (rather than lists).
'''
http = None
def __init__(self, host, username='', password='' ):
''' Initiate the connection with the databank <host>. Optionally, also <username> and <password>'''
self.host = host
self.username = username
self.password = password
self._initiate_http( self.host, self.username, self.password )
self.expect_type = "application/JSON"
# def initiate( self ):
# ''' Errrr, not used... '''
# if self.http == None:
# self._initiate_http( self.host, self.username, self.password )
def _initiate_http( self, host, username, password ):
self.http = HTTPRequest( endpointhost=host )
if password !='' and username != '':
self.http.setRequestUserPass( endpointuser=username, endpointpass=password )
elif username != '':
self.http.setRequestUserPass( endpointuser=username )
def getSilos( self ):
''' Get a list of silos on this repository '''
(response, respdata) = self.http.doHTTP_GET(resource="/silos", expect_type=self.expect_type)
silos = []
if self.responseGood( response ):
silos = simplejson.loads(respdata)
return self._create_response( response, silos )
def createSilo( self, silo ):
''' Create a silo in this repository '''
fields = [ ("silo", silo) ]
(reqtype, reqdata) = self.http.encode_multipart_formdata( fields, [] )
(response, respdata) = self.http.doHTTP_POST(reqdata, data_type=reqtype, resource="/admin", expect_type=self.expect_type)
return self._create_response( response, None )
def getSiloState( self, silo ):
''' Get a the state information for the <dataset> within the <silo>'''
(response, respdata) = self.http.doHTTP_GET(resource="/" + silo + "/states/", expect_type=self.expect_type)
states = {}
if self.responseGood( response ):
states = simplejson.loads(respdata)
return self._create_response( response, states )
def getDatasets( self, silo ):
''' Get a list of datasets within the <silo>'''
(response, respdata) = self.http.doHTTP_GET(resource="/" + silo, expect_type=self.expect_type)
datasets = []
if self.responseGood( response ):
datasets = simplejson.loads(respdata)
return self._create_response( response, datasets )
def createDataset( self, silo, id, **params):
''' Create a dataset with <id> in <silo> . Optionally set a <title>, <emborgoed>, <embargoed until> and <isUUID>'''
fields = [("id", id)]
for k,v in params.iteritems():
fields.append((k, v))
(reqtype, reqdata) = self.http.encode_multipart_formdata( fields, [] )
(response, respdata) = self.http.doHTTP_POST(reqdata, data_type=reqtype, resource="/" + silo +"/datasets", expect_type=self.expect_type)
return self._create_response( response, None )
def setEmbargo( self, silo, dataset, embargoed, embargoed_until=None ):
''' Set the embargo for the <dataset> in <silo>. <embargoed>='true'/'false'. If embargoed_until=None and embargoed='true', it is embargoed indefinitely '''
fields = [("embargoed",embargoed)]
if embargoed_until != None:
fields.append(('embargoed_until', embargoed_until))
(reqtype, reqdata) = self.http.encode_multipart_formdata(fields, [])
(response, respdata) = self.http.doHTTP_POST(reqdata, data_type=reqtype, resource="/"+ silo +"/datasets/" + dataset, expect_type=self.expect_type)
return self._create_response( response, None )
def getDatasetState( self, silo, dataset ):
''' Get a the state information for the <dataset> within the <silo>'''
(response, respdata) = self.http.doHTTP_GET(resource="/" + silo + "/states/" + dataset, expect_type=self.expect_type)
states = {}
if self.responseGood( response ):
states = simplejson.loads(respdata)
return self._create_response( response, states )
def uploadFile( self, silo, dataset, filepath, format="application/zip", filename=None ):
''' Upload the file at <filepath> into the <dataset> in <silo>. Optionally set a format, or give a filename to use in the dataset '''
if filename == None:
filename = os.path.basename( filepath )
zipdata = open(filepath).read()
files = [
("file", filename, zipdata, format )
]
(reqtype, reqdata) = self.http.encode_multipart_formdata([], files)
(response, respdata) = self.http.doHTTP_POST(reqdata, data_type=reqtype, resource="/"+ silo +"/datasets/" + dataset, expect_type=self.expect_type)
return self._create_response( response, None )
def getFile( self, silo, dataset, path ):
''' Get a list of datasets within the <silo>'''
(response, respdata) = self.http.doHTTP_GET(resource="/" + silo + "/datasets/" + dataset + '/' + path, expect_type=self.expect_type)
return self._create_response( response, respdata )
def _create_response( self, response, results ):
return type("Response",(), { 'status':response.status, 'reason': response.reason, 'results' : results })
@staticmethod
def responseGood( response ):
return Databank.good( response )
@staticmethod
def good( response ):
return response.status >= 200 and response.status < 300
@staticmethod
def error( response ):
return not Databank.good( response )
import json as simplejson
from lib.HTTP_request import HTTPRequest
#--CONFIG-------------------------------------------------------
host = 'databank-vm1.oerc.ox.ac.uk'
username = '******'
password = '******'
datastore = HTTPRequest(endpointhost=host)
datastore.setRequestUserPass(endpointuser=user_name, endpointpass=password)
#--HTTP GET-------------------------------------------------------
#Get a list of silos accessible to the user
(resp, respdata) = datastore.doHTTP_GET(resource="/silos", expect_type="application/JSON")
print "Get list of silos"
print resp.status, resp.reason
if resp.status >= 200 and resp.status < 300:
silos_list = simplejson.loads(respdata)
print "number of silos", len(silos_list)
print "-"*40, "\n\n"
#--HTTP GET-------------------------------------------------------
#Get a list of all the datasets in the silo 'sandbox'
(resp, respdata) = datastore.doHTTP_GET(resource="/sandbox", expect_type="application/JSON")
print "Get list of datasets"
print resp.status, resp.reason
if resp.status >= 200 and resp.status < 300:
dataset_list = simplejson.loads(respdata)
print "number of datasets", len(dataset_list.keys())
else:
print "Error getting list of datasets"
print "-"*40, "\n\n"