def mergeProteinAndMembranePdb(file,fileToMerge):
'''
Merges all amino acid lines in file with non protein atoms in filetoMerge
the box size of fileToMerge is kept and the boxsize of file is discarded
'''
boxSize = pdb_util.findPDBBoxSize(fileToMerge)
lines = pdb_util.findAllNonProtein(fileToMerge)
toMerge = pdb_util.findAllAminoAcidLines(file)
#backup the file
versionFile(file)
# #write new file
with open(file,"w") as f:
str = boxSize.strip() +'\n' + toMerge.strip() +'\n'+ lines.strip()
f.write(str)
logCommand("Merged the non Amino acid lines of %s with all the atoms in %s"%(file,fileToMerge))
def mergePdb(file,fileToMerge):
'''
merges the contents of fileToMerge into file
backs up file before doing the merge
All lines starting with ATOM in fileToMerge will be added to the top of the file
'''
with open(file,"r") as f:
lines = f.readlines()
toMerge = pdb_util.findAllAtomLines(fileToMerge)
#backup the file
versionFile(file)
# #write new file
with open(file,"w") as f:
str = "".join(lines[1:4]) + toMerge +'\n'+ "".join(lines[4:])
f.write(str)
logCommand("Merged the pdb files %s %s"%(file,fileToMerge))
