#model_file_name = "complicated_nodes-L3V1.xml"
model_file_name = "complicated_nodes.xml"
model_file = Path(pkg_resources.resource_filename(
"libsbml_draw", "model/data/" + model_file_name))
# https://stackoverflow.com/questions/33635439/matplotlib-patch-size-in-points
#print("validate: ", SBMLlayout._validate_sbml_filename(str(model_file)))
sl = SBMLlayout(str(model_file))
sl._describeModel()
#sl.drawNetwork("complicated_nodes.png", figsize=(6,6))
#sl.drawNetwork("complicated_nodes.png", figsize=(8,8))
sl.drawNetwork("complicated_nodes.png")
#sl.setNodeFontSize("all", 6)
#sl.drawNetwork()
#for node in sl.getNodeIds():
# centroid = sl.getNodeCentroid(node)
# print("centroid: ", centroid[0], ", ", centroid[1])
# print("width: ", sl.getNodeWidth(node))
# print("height: ", sl.getNodeHeight(node))
from pathlib import Path
import pkg_resources
from libsbml_draw.model.sbml_layout import SBMLlayout
model_file_name = "model.xml"
model_file = Path(
pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
sl = SBMLlayout(str(model_file))
sl._describeModel()
print("node ids: ", sl.getNodeIds())
print("reaction ids: ", sl.getReactionIds())
sl.drawNetwork()
sl._describeReaction(0)
sl.setNodeEdgeWidth("all", 2)
out_file = "model_out.xml"
sl.writeSBMLFile("model_out.xml")
sl2 = SBMLlayout(out_file)
print("sl2 layoutSpecified: ", sl2._SBMLlayout__layoutSpecified)
