print libspud.get_option_shape(tensor_path)
print libspud.get_option_rank(tensor_path)
print libspud.get_option(tensor_path)
assert (libspud.get_option(tensor_path) == [[5.0, 6.0], [7.0, 8.0]])
try:
libspud.add_option('/foo')
except libspud.SpudNewKeyWarning, e:
print "caught libspud.SpudNewKeyWarning: " + e.message
print libspud.option_count('/foo')
libspud.set_option('/problem_type', 'helloworld')
print libspud.get_option('/problem_type')
try:
libspud.set_option_attribute('/foo/bar', 'foobar')
except libspud.SpudNewKeyWarning, e:
print "caught libspud.SpudNewKeyWarning: " + e.message
print libspud.get_option('/foo/bar')
libspud.delete_option('/foo')
print libspud.option_count('/foo')
try:
libspud.get_option('/foo')
except libspud.SpudKeyError, e:
print "caught libspud.SpudKeyError: " + e.message
try:
libspud.get_option('/geometry')
except libspud.SpudTypeError, e:
assert(libspud.get_option(tensor_path)==[[5.0, 6.0, 2.0],[7.0, 8.0, 1.0]])
try:
libspud.add_option('/foo')
assert False
except libspud.SpudNewKeyWarning, e:
pass
assert libspud.option_count('/foo') == 1
libspud.set_option('/problem_type', 'helloworld')
assert libspud.get_option('/problem_type') == "helloworld"
try:
libspud.set_option_attribute('/foo/bar', 'foobar')
assert False
except libspud.SpudNewKeyWarning, e:
pass
assert libspud.get_option('/foo/bar') == "foobar"
libspud.delete_option('/foo')
assert libspud.option_count('/foo') == 0
try:
libspud.get_option('/foo')
assert False
except libspud.SpudKeyError, e:
pass
def convert(fluidity_options_file_path, ff_options_file_path):
# Read in Fluidity simulation options
libspud.clear_options()
libspud.load_options(fluidity_options_file_path)
# Simulation name
simulation_name = libspud.get_option("/simulation_name")
# Geometry
base = "/geometry"
dimension = libspud.get_option(base + "/dimension")
mesh_path = libspud.get_option(
base + "/mesh::CoordinateMesh/from_file/file_name"
) + ".msh" # FIXME: Always assumes gmsh format.
# Function spaces
velocity_function_space = FunctionSpace("/geometry", 1)
freesurface_function_space = FunctionSpace("/geometry", 2)
# Timestepping
base = "/timestepping"
current_time = libspud.get_option(base + "/current_time")
timestep = libspud.get_option(base + "/timestep")
finish_time = libspud.get_option(base + "/finish_time")
## Steady-state
if (libspud.have_option(base + "/steady_state")):
if (libspud.have_option(base + "/steady_state/tolerance")):
steady_state = libspud.get_option(base + "/steady_state/tolerance")
else:
steady_state = 1e-7
else:
steady_state = None
# I/O
base = "/io"
dump_format = libspud.get_option(base + "/dump_format")
if (libspud.have_option(base + "/dump_period")):
dump_period = libspud.get_option(base + "/dump_period/constant")
elif (libspud.have_option(base + "/dump_period_in_timesteps")):
dump_period = libspud.get_option(
base + "/dump_period_in_timesteps/constant") * timestep
else:
print "Unable to obtain dump_period."
sys.exit()
# Gravity
g_magnitude = libspud.get_option("/physical_parameters/gravity/magnitude")
# Velocity field (momentum equation)
base = "/material_phase[0]/vector_field::Velocity"
## Depth (free surface mean height)
c = libspud.get_child_name(
base +
"/prognostic/equation::ShallowWater/scalar_field::BottomDepth/prescribed/value::WholeMesh/",
1)
depth = libspud.get_option(
base +
"/prognostic/equation::ShallowWater/scalar_field::BottomDepth/prescribed/value::WholeMesh/%s"
% c)
## Bottom drag coefficient
if (libspud.have_option(base +
"/prognostic/equation::ShallowWater/bottom_drag")):
c = libspud.get_child_name(
base +
"/prognostic/equation::ShallowWater/bottom_drag/scalar_field::BottomDragCoefficient/prescribed/value::WholeMesh/",
1)
bottom_drag = libspud.get_option(
base +
"/prognostic/equation::ShallowWater/bottom_drag/scalar_field::BottomDragCoefficient/prescribed/value::WholeMesh/%s"
% c)
else:
bottom_drag = None
## Viscosity
if (libspud.have_option(base + "/prognostic/tensor_field::Viscosity")):
viscosity = libspud.get_option(
base +
"/prognostic/tensor_field::Viscosity/prescribed/value::WholeMesh/anisotropic_symmetric/constant"
)[0][0]
else:
viscosity = None
## Momentum source
if (libspud.have_option(base + "/prognostic/vector_field::Source")):
c = libspud.get_child_name(
base +
"/prognostic/vector_field::Source/prescribed/value::WholeMesh/", 1)
momentum_source = libspud.get_option(
base +
"/prognostic/vector_field::Source/prescribed/value::WholeMesh/%s" %
c)
else:
momentum_source = None
## Initial condition
if (libspud.have_option(base +
"/prognostic/initial_condition::WholeMesh")):
c = libspud.get_child_name(
base + "/prognostic/initial_condition::WholeMesh/", 1)
velocity_initial_condition = libspud.get_option(
base + "/prognostic/initial_condition::WholeMesh/%s" % c)
else:
velocity_initial_condition = 0.0
## Boundary conditions
number_of_bcs = libspud.option_count(base +
"/prognostic/boundary_conditions")
velocity_bcs = []
for i in range(number_of_bcs):
velocity_bcs.append(
VelocityBoundaryCondition(base +
"/prognostic/boundary_conditions[%d]" %
i))
# Pressure field (continuity equation)
base = "/material_phase[0]/scalar_field::Pressure"
integrate_by_parts = libspud.have_option(
base +
"/prognostic/spatial_discretisation/continuous_galerkin/integrate_continuity_by_parts"
)
## Initial condition
if (libspud.have_option(base +
"/prognostic/initial_condition::WholeMesh")):
c = libspud.get_child_name(
base + "/prognostic/initial_condition::WholeMesh/", 1)
pressure_initial_condition = libspud.get_option(
base + "/prognostic/initial_condition::WholeMesh/%s" % c)
else:
pressure_initial_condition = 0.0
## Boundary conditions
number_of_bcs = libspud.option_count(base +
"/prognostic/boundary_conditions")
pressure_bcs = []
for i in range(number_of_bcs):
pressure_bcs.append(
PressureBoundaryCondition(base +
"/prognostic/boundary_conditions[%d]" %
i))
## Continuity source
if (libspud.have_option(base + "/prognostic/scalar_field::Source")):
c = libspud.get_child_name(
base +
"/prognostic/scalar_field::Source/prescribed/value::WholeMesh/", 1)
continuity_source = libspud.get_option(
base +
"/prognostic/scalar_field::Source/prescribed/value::WholeMesh/%s" %
c)
else:
continuity_source = None
# Write out to a Firedrake-Fluids simulation configuration file
libspud.clear_options()
# Create a bare-bones .swml file to add to.
f = open(ff_options_file_path, "w")
f.write("<?xml version='1.0' encoding='utf-8'?>\n")
f.write("<shallow_water_options>\n")
f.write("</shallow_water_options>\n")
f.close()
libspud.load_options(ff_options_file_path)
# Simulation name
libspud.set_option("/simulation_name", simulation_name)
# Geometry
base = "/geometry"
libspud.set_option(base + "/dimension", dimension)
libspud.set_option(base + "/mesh/from_file/relative_path", mesh_path)
# Function spaces
base = "/function_spaces"
libspud.set_option(base + "/function_space::VelocityFunctionSpace/degree",
velocity_function_space.degree)
libspud.set_option(base + "/function_space::VelocityFunctionSpace/family",
velocity_function_space.family)
libspud.set_option(
base + "/function_space::FreeSurfaceFunctionSpace/degree",
freesurface_function_space.degree)
libspud.set_option(
base + "/function_space::FreeSurfaceFunctionSpace/family",
freesurface_function_space.family)
# I/O
base = "/io"
libspud.set_option(base + "/dump_format", dump_format)
libspud.set_option(base + "/dump_period", dump_period)
# Timestepping
base = "/timestepping"
print timestep
libspud.set_option(base + "/current_time", current_time)
try:
libspud.set_option(base + "/timestep", timestep)
except:
pass
libspud.set_option(base + "/finish_time", finish_time)
## Steady-state
if (steady_state):
libspud.set_option(base + "/steady_state/tolerance", steady_state)
# Gravity
libspud.set_option("/physical_parameters/gravity/magnitude", g_magnitude)
# System/Core Fields: Velocity
base = "/system/core_fields/vector_field::Velocity"
## Initial condition
if (isinstance(velocity_initial_condition, str)):
libspud.set_option(base + "/initial_condition/python",
velocity_initial_condition)
else:
libspud.set_option(base + "/initial_condition/constant",
velocity_initial_condition)
## Boundary conditions
try:
for i in range(len(velocity_bcs)):
libspud.set_option(
base +
"/boundary_condition::%s/surface_ids" % velocity_bcs[i].name,
velocity_bcs[i].surface_ids)
libspud.set_option_attribute(
base +
"/boundary_condition::%s/type/name" % velocity_bcs[i].name,
velocity_bcs[i].type)
if (velocity_bcs[i].type == "dirichlet"):
if (isinstance(velocity_bcs[i].value, str)):
libspud.set_option(
base +
"/boundary_condition::%s/type::dirichlet/value/python"
% velocity_bcs[i].name, velocity_bcs[i].value)
else:
libspud.set_option(
base +
"/boundary_condition::%s/type::dirichlet/value/constant"
% velocity_bcs[i].name, velocity_bcs[i].value)
except:
pass
# System/Core Fields: FreeSurfacePerturbation
base = "/system/core_fields/scalar_field::FreeSurfacePerturbation"
#FIXME: Pressure initial and boundary conditions are multiplied by 'g' in Fluidity, but not in Firedrake-Fluids.
## Initial condition
if (isinstance(pressure_initial_condition, str)):
libspud.set_option(base + "/initial_condition/python",
pressure_initial_condition)
else:
libspud.set_option(base + "/initial_condition/constant",
pressure_initial_condition)
## Boundary conditions
try:
for i in range(len(pressure_bcs)):
libspud.set_option(
base +
"/boundary_condition::%s/surface_ids" % pressure_bcs[i].name,
pressure_bcs[i].surface_ids)
libspud.set_option(
base +
"/boundary_condition::%s/type/name" % pressure_bcs[i].name,
pressure_bcs[i].type)
if (pressure_bcs[i].type == "dirichlet"):
if (isinstance(pressure_bcs[i].value, str)):
libspud.set_option(
base +
"/boundary_condition::%s/type::dirichlet/value/python"
% pressure_bcs[i].name, pressure_bcs[i].value)
else:
libspud.set_option(
base +
"/boundary_condition::%s/type::dirichlet/value/constant"
% pressure_bcs[i].name, pressure_bcs[i].value)
except:
pass
# System/Core Fields: FreeSurfaceMean
base = "/system/core_fields/scalar_field::FreeSurfaceMean"
if (isinstance(depth, str)):
libspud.set_option(base + "/value/python", depth)
else:
libspud.set_option(base + "/value/constant", depth)
# Equations: Continuity equation
base = "/system/equations/continuity_equation"
libspud.set_option(base + "/integrate_by_parts", integrate_by_parts)
## Source term
if (continuity_source is not None):
if (isinstance(continuity_source, str)):
libspud.set_option(
base + "/source_term/scalar_field::Source/value/python",
continuity_source)
else:
libspud.set_option(
base + "/source_term/scalar_field::Source/value/constant",
continuity_source)
# Equations: Momentum equation
base = "/system/equations/momentum_equation"
## Viscosity
if (viscosity is not None):
if (isinstance(viscosity, str)):
libspud.set_option(
base + "/stress_term/scalar_field::Viscosity/value/python",
viscosity)
else:
libspud.set_option(
base + "/stress_term/scalar_field::Viscosity/value/constant",
viscosity)
## Bottom drag
if (bottom_drag is not None):
if (isinstance(bottom_drag, str)):
libspud.set_option(
base +
"/drag_term/scalar_field::BottomDragCoefficient/value/python",
bottom_drag)
else:
libspud.set_option(
base +
"/drag_term/scalar_field::BottomDragCoefficient/value/constant",
bottom_drag)
## Source term
if (momentum_source is not None):
if (isinstance(momentum_source, str)):
libspud.set_option(
base + "/source_term/vector_field::Source/value/python",
momentum_source)
else:
libspud.set_option(
base + "/source_term/vector_field::Source/value/constant",
momentum_source)
# Write all the applied options to file.
libspud.write_options(ff_options_file_path)
return
def convert(fluidity_options_file_path, ff_options_file_path):
# Read in Fluidity simulation options
libspud.clear_options()
libspud.load_options(fluidity_options_file_path)
# Simulation name
simulation_name = libspud.get_option("/simulation_name")
# Geometry
base = "/geometry"
dimension = libspud.get_option(base + "/dimension")
mesh_path = libspud.get_option(base + "/mesh::CoordinateMesh/from_file/file_name") + ".msh" # FIXME: Always assumes gmsh format.
# Function spaces
velocity_function_space = FunctionSpace("/geometry", 1)
freesurface_function_space = FunctionSpace("/geometry", 2)
# Timestepping
base = "/timestepping"
current_time = libspud.get_option(base + "/current_time")
timestep = libspud.get_option(base + "/timestep")
finish_time = libspud.get_option(base + "/finish_time")
## Steady-state
if(libspud.have_option(base + "/steady_state")):
if(libspud.have_option(base + "/steady_state/tolerance")):
steady_state = libspud.get_option(base + "/steady_state/tolerance")
else:
steady_state = 1e-7
else:
steady_state = None
# I/O
base = "/io"
dump_format = libspud.get_option(base + "/dump_format")
if(libspud.have_option(base + "/dump_period")):
dump_period = libspud.get_option(base + "/dump_period/constant")
elif(libspud.have_option(base + "/dump_period_in_timesteps")):
dump_period = libspud.get_option(base + "/dump_period_in_timesteps/constant")*timestep
else:
print "Unable to obtain dump_period."
sys.exit()
# Gravity
g_magnitude = libspud.get_option("/physical_parameters/gravity/magnitude")
# Velocity field (momentum equation)
base = "/material_phase[0]/vector_field::Velocity"
## Depth (free surface mean height)
c = libspud.get_child_name(base + "/prognostic/equation::ShallowWater/scalar_field::BottomDepth/prescribed/value::WholeMesh/", 1)
depth = libspud.get_option(base + "/prognostic/equation::ShallowWater/scalar_field::BottomDepth/prescribed/value::WholeMesh/%s" % c)
## Bottom drag coefficient
if(libspud.have_option(base + "/prognostic/equation::ShallowWater/bottom_drag")):
c = libspud.get_child_name(base + "/prognostic/equation::ShallowWater/bottom_drag/scalar_field::BottomDragCoefficient/prescribed/value::WholeMesh/", 1)
bottom_drag = libspud.get_option(base + "/prognostic/equation::ShallowWater/bottom_drag/scalar_field::BottomDragCoefficient/prescribed/value::WholeMesh/%s" % c)
else:
bottom_drag = None
## Viscosity
if(libspud.have_option(base + "/prognostic/tensor_field::Viscosity")):
viscosity = libspud.get_option(base + "/prognostic/tensor_field::Viscosity/prescribed/value::WholeMesh/anisotropic_symmetric/constant")[0][0]
else:
viscosity = None
## Momentum source
if(libspud.have_option(base + "/prognostic/vector_field::Source")):
c = libspud.get_child_name(base + "/prognostic/vector_field::Source/prescribed/value::WholeMesh/", 1)
momentum_source = libspud.get_option(base + "/prognostic/vector_field::Source/prescribed/value::WholeMesh/%s" % c)
else:
momentum_source = None
## Initial condition
if(libspud.have_option(base + "/prognostic/initial_condition::WholeMesh")):
c = libspud.get_child_name(base + "/prognostic/initial_condition::WholeMesh/", 1)
velocity_initial_condition = libspud.get_option(base + "/prognostic/initial_condition::WholeMesh/%s" % c)
else:
velocity_initial_condition = 0.0
## Boundary conditions
number_of_bcs = libspud.option_count(base + "/prognostic/boundary_conditions")
velocity_bcs = []
for i in range(number_of_bcs):
velocity_bcs.append(VelocityBoundaryCondition(base + "/prognostic/boundary_conditions[%d]" % i))
# Pressure field (continuity equation)
base = "/material_phase[0]/scalar_field::Pressure"
integrate_by_parts = libspud.have_option(base + "/prognostic/spatial_discretisation/continuous_galerkin/integrate_continuity_by_parts")
## Initial condition
if(libspud.have_option(base + "/prognostic/initial_condition::WholeMesh")):
c = libspud.get_child_name(base + "/prognostic/initial_condition::WholeMesh/", 1)
pressure_initial_condition = libspud.get_option(base + "/prognostic/initial_condition::WholeMesh/%s" % c)
else:
pressure_initial_condition = 0.0
## Boundary conditions
number_of_bcs = libspud.option_count(base + "/prognostic/boundary_conditions")
pressure_bcs = []
for i in range(number_of_bcs):
pressure_bcs.append(PressureBoundaryCondition(base + "/prognostic/boundary_conditions[%d]" % i))
## Continuity source
if(libspud.have_option(base + "/prognostic/scalar_field::Source")):
c = libspud.get_child_name(base + "/prognostic/scalar_field::Source/prescribed/value::WholeMesh/", 1)
continuity_source = libspud.get_option(base + "/prognostic/scalar_field::Source/prescribed/value::WholeMesh/%s" % c)
else:
continuity_source = None
# Write out to a Firedrake-Fluids simulation configuration file
libspud.clear_options()
# Create a bare-bones .swml file to add to.
f = open(ff_options_file_path, "w")
f.write("<?xml version='1.0' encoding='utf-8'?>\n")
f.write("<shallow_water_options>\n")
f.write("</shallow_water_options>\n")
f.close()
libspud.load_options(ff_options_file_path)
# Simulation name
libspud.set_option("/simulation_name", simulation_name)
# Geometry
base = "/geometry"
libspud.set_option(base + "/dimension", dimension)
libspud.set_option(base + "/mesh/from_file/relative_path", mesh_path)
# Function spaces
base = "/function_spaces"
libspud.set_option(base + "/function_space::VelocityFunctionSpace/degree", velocity_function_space.degree)
libspud.set_option(base + "/function_space::VelocityFunctionSpace/family", velocity_function_space.family)
libspud.set_option(base + "/function_space::FreeSurfaceFunctionSpace/degree", freesurface_function_space.degree)
libspud.set_option(base + "/function_space::FreeSurfaceFunctionSpace/family", freesurface_function_space.family)
# I/O
base = "/io"
libspud.set_option(base + "/dump_format", dump_format)
libspud.set_option(base + "/dump_period", dump_period)
# Timestepping
base = "/timestepping"
print timestep
libspud.set_option(base + "/current_time", current_time)
try:
libspud.set_option(base + "/timestep", timestep)
except:
pass
libspud.set_option(base + "/finish_time", finish_time)
## Steady-state
if(steady_state):
libspud.set_option(base + "/steady_state/tolerance", steady_state)
# Gravity
libspud.set_option("/physical_parameters/gravity/magnitude", g_magnitude)
# System/Core Fields: Velocity
base = "/system/core_fields/vector_field::Velocity"
## Initial condition
if(isinstance(velocity_initial_condition, str)):
libspud.set_option(base + "/initial_condition/python", velocity_initial_condition)
else:
libspud.set_option(base + "/initial_condition/constant", velocity_initial_condition)
## Boundary conditions
try:
for i in range(len(velocity_bcs)):
libspud.set_option(base + "/boundary_condition::%s/surface_ids" % velocity_bcs[i].name, velocity_bcs[i].surface_ids)
libspud.set_option_attribute(base + "/boundary_condition::%s/type/name" % velocity_bcs[i].name, velocity_bcs[i].type)
if(velocity_bcs[i].type == "dirichlet"):
if(isinstance(velocity_bcs[i].value, str)):
libspud.set_option(base + "/boundary_condition::%s/type::dirichlet/value/python" % velocity_bcs[i].name, velocity_bcs[i].value)
else:
libspud.set_option(base + "/boundary_condition::%s/type::dirichlet/value/constant" % velocity_bcs[i].name, velocity_bcs[i].value)
except:
pass
# System/Core Fields: FreeSurfacePerturbation
base = "/system/core_fields/scalar_field::FreeSurfacePerturbation"
#FIXME: Pressure initial and boundary conditions are multiplied by 'g' in Fluidity, but not in Firedrake-Fluids.
## Initial condition
if(isinstance(pressure_initial_condition, str)):
libspud.set_option(base + "/initial_condition/python", pressure_initial_condition)
else:
libspud.set_option(base + "/initial_condition/constant", pressure_initial_condition)
## Boundary conditions
try:
for i in range(len(pressure_bcs)):
libspud.set_option(base + "/boundary_condition::%s/surface_ids" % pressure_bcs[i].name, pressure_bcs[i].surface_ids)
libspud.set_option(base + "/boundary_condition::%s/type/name" % pressure_bcs[i].name, pressure_bcs[i].type)
if(pressure_bcs[i].type == "dirichlet"):
if(isinstance(pressure_bcs[i].value, str)):
libspud.set_option(base + "/boundary_condition::%s/type::dirichlet/value/python" % pressure_bcs[i].name, pressure_bcs[i].value)
else:
libspud.set_option(base + "/boundary_condition::%s/type::dirichlet/value/constant" % pressure_bcs[i].name, pressure_bcs[i].value)
except:
pass
# System/Core Fields: FreeSurfaceMean
base = "/system/core_fields/scalar_field::FreeSurfaceMean"
if(isinstance(depth, str)):
libspud.set_option(base + "/value/python", depth)
else:
libspud.set_option(base + "/value/constant", depth)
# Equations: Continuity equation
base = "/system/equations/continuity_equation"
libspud.set_option(base + "/integrate_by_parts", integrate_by_parts)
## Source term
if(continuity_source is not None):
if(isinstance(continuity_source, str)):
libspud.set_option(base + "/source_term/scalar_field::Source/value/python", continuity_source)
else:
libspud.set_option(base + "/source_term/scalar_field::Source/value/constant", continuity_source)
# Equations: Momentum equation
base = "/system/equations/momentum_equation"
## Viscosity
if(viscosity is not None):
if(isinstance(viscosity, str)):
libspud.set_option(base + "/stress_term/scalar_field::Viscosity/value/python", viscosity)
else:
libspud.set_option(base + "/stress_term/scalar_field::Viscosity/value/constant", viscosity)
## Bottom drag
if(bottom_drag is not None):
if(isinstance(bottom_drag, str)):
libspud.set_option(base + "/drag_term/scalar_field::BottomDragCoefficient/value/python", bottom_drag)
else:
libspud.set_option(base + "/drag_term/scalar_field::BottomDragCoefficient/value/constant", bottom_drag)
## Source term
if(momentum_source is not None):
if(isinstance(momentum_source, str)):
libspud.set_option(base + "/source_term/vector_field::Source/value/python", momentum_source)
else:
libspud.set_option(base + "/source_term/vector_field::Source/value/constant", momentum_source)
# Write all the applied options to file.
libspud.write_options(ff_options_file_path)
return