def startLoad(self, dirpath):
'''Creates a load thread to process the current directory.
If a directory has already been chosen, the display will be reset
first.
'''
#print 'Load Started'
if self.hasImage == True:
self.initData()
self.loadimage = LoadThread(self.jobqueue, dirpath)
self.loadimage.start()
return
class ProcessCenter(HasTraits):
'''Delegates tasks to the appropriate resources and stores data.
Manages GUI events and decides who should handle them. Also, serves as the
central data structure to store all of the information related to the
current data set.
'''
##############################################
# Initialize
##############################################
def __init__(self, **kwargs):
super(ProcessCenter, self).__init__()
self.processing_job = threading.Thread(target=self.processJob)
self.processing_job.daemon = True
self.jobqueue = Queue.Queue()
self.add_trait('display', Display(self.jobqueue))
self.add_trait('datalist', List())
self.add_trait('datalistlength', Int())
self.add_trait('message', Str(''))
self.add_trait('cache', Instance(ImageCache, ImageCache()))
self.add_trait('pic', Instance(Image))
self.add_trait('hasImage', Bool())
self.initDisplay()
self.initData()
return
def initDisplay(self):
'''Plots are initialized as None.
This allows for consistency with the plot methods of the Display
class. They will be created when these methods are called the first
time.
'''
self.imageplot = None
self.histogram = None
self.plot1d = None
return
def initData(self):
'''Initializes all values before a data set is chosen.
This method is used both at start and when switching directories in
order to reset the display and internal mechanisms.
'''
del self.datalist[:]
self.datalistlength = 0
self.message = ''
self.hasImage = False
self.cache.clear()
self.newndx = -1
self.rrplots = {}
pic = Image(-1, '')
pic.data = np.zeros((2048, 2048))
self.pic = pic
self.plotData()
self.on_trait_change(self.plotData, 'pic', dispatch='new')
return
##############################################
# Jobs
##############################################
def addNewImage(self, path, **kwargs):
'''Adds a new image to the list of data in the directory.
path -- the filepath of the image
Displays warning if there is no associated metadata file
named path.metadata.
'''
#print 'Image Added:'
n = len(self.datalist)
self.datalist.append(Image(n, path))
self.hasImage = True
self.datalistlength += 1
if not self.datalist[n].metadata:
self.message = 'No metadata found for %s.' % os.path.split(path)[1]
print self.message
return
def plotData(self):
'''Updates the plots to display data related to the current image.'''
#print 'Plot Data'
self.pic.load()
self.imageplot = self.display.plotImage(self.pic, self.imageplot)
self.histogram = self.display.plotHistogram(self.pic, self.histogram)
self.plot1d = self.display.plot1DCut(self.pic, self.plot1d)
return
def startLoad(self, dirpath):
'''Creates a load thread to process the current directory.
If a directory has already been chosen, the display will be reset
first.
'''
#print 'Load Started'
if self.hasImage == True:
self.initData()
self.loadimage = LoadThread(self.jobqueue, dirpath)
self.loadimage.start()
return
def initCache(self):
'''Initializes the cache by placing the first 2 images in the cache.'''
#print 'Init Cache'
self.pic = self.datalist[0]
for i in range(2):
pic = self.datalist[i]
self.cache.append(pic)
pic.load()
return
def changeIndex(self, newndx):
'''Determines how the new image selection should be processed.'''
#print 'Change Index'
self.newndx = newndx
currentpos = self.pic.n
if newndx - currentpos == -1:
#print 'Click left'
self.updateCache('left')
elif newndx - currentpos == 1:
#print 'Click right'
self.updateCache('right')
elif newndx - currentpos == 0:
#print 'Click same'
return
elif newndx < self.datalistlength and newndx >= 0:
#print 'Click skip'
self.updateCache('click')
return
def updateCache(self, strnext):
'''Updates the image cache based on the current image.
strnext -- the type of traversal: either left, right, or click
| Warning: No images loaded.
| Warning: Cannot traverse LEFT.
| Warning: Cannot traverse RIGHT.
'''
#print 'Update Cache'
#print self.cache
n = self.pic.n
if n == -1:
self.message = 'WARNING: No images loaded.'
print self.message
return
if strnext == 'left':
self.newndx = n - 1
#print '%d -> %d' % (n, self.newndx)
if n == 0:
self.message = 'WARNING: Cannot traverse LEFT.'
print self.message
return
else:
self._innerCache(n, -1)
elif strnext == 'right':
self.newndx = n + 1
#print '%d -> %d' % (n, self.newndx)
if n == self.datalistlength - 1:
self.message = 'WARNING: Cannot traverse RIGHT.'
print self.message
return
else:
self.cache.reverse()
self._innerCache(n, 1)
self.cache.reverse()
elif strnext == 'click':
#print '%d -> %d' % (n, self.newndx)
self.cache.clear()
if self.newndx == 0:
self.initCache()
else:
self.pic = self.datalist[self.newndx]
self.cache.append(self.datalist[self.newndx-1])
self.cache.append(self.pic)
if self.newndx != self.datalistlength - 1:
self.cache.append(self.datalist[self.newndx+1])
else:
self.cache.append(Image(-1, ''))
#print self.cache
return
def _innerCache(self, n, i):
'''Internal cache method that deals with cache logic when updating.'''
self.pic = self.cache.popleft()
self.cache.appendleft(self.pic)
if (n > 1 and i == -1) or (n < self.datalistlength-2 and i == 1):
pic = self.datalist[n+i*2]
self.cache.appendleft(pic)
if (n == 1 and i == -1) or (n == self.datalistlength-2 and i == 1):
self.cache.pop()
return
# TODO: As more RRs are supported, move them to a separate file.
def countLowPixels(self, image):
'''Finds the percentage of pixels below the selected threshold.
image -- Image object
'''
selection = self.display._selection
data = image.ravel()
limit = selection[0]
count = np.count_nonzero(data < limit)
rv = count/float(np.size(data))
return rv*100
def countHighPixels(self, image):
'''Finds the percentage of pixels above the selected threshold.
image -- Image object
'''
selection = self.display._selection
data = image.ravel()
limit = selection[1]
count = np.count_nonzero(data > limit)
rv = count/float(np.size(data))
return rv*100
def createRRPlot(self, rrchoice):
'''Generates a new plot based on the RR given and the current data.
rrchoice -- the reduced representation
| Warning: RR Plot Cannot be (Re)created
| Warning: No RR selected.
'''
if self.datalistlength == 0:
self.message = 'WARNING: RR Plot Cannot be (Re)created'
print self.message
return
elif rrchoice == 'Choose a Reduced Representation':
self.message = 'WARNING: No RR selected.'
print self.message
return
if rrchoice == 'Mean':
f = lambda x: np.mean(x)
elif rrchoice == 'Total Intensity':
f = lambda x: np.sum(x)
elif rrchoice == 'Standard Deviation':
f = lambda x: np.std(x)
elif rrchoice == '% Pixels Below Threshold':
if self.display._selection != None:
f = self.countLowPixels
else:
self.message = 'A range selection must be chosen.'
print self.message
return
elif rrchoice == '% Pixels Above Threshold':
if self.display._selection != None:
f = self.countHighPixels
else:
self.message = 'A range selection must be chosen.'
print self.message
return
if rrchoice not in self.rrplots:
self.rrplots[rrchoice] = rrplot = self.display.plotRRMap(
np.array([0]), rrchoice, None)
else:
return
rrdata = np.array([])
self.message = 'Generating RR Plot........'
print self.message
for i, image in enumerate(self.datalist):
image.load()
self.message = '%d: %s........Loaded' % (i+1, image.name)
print self.message
rr = f(image.data)
rrdata = np.append(rrdata, rr)
rrplot = self.display.plotRRMap(rrdata, rrchoice, rrplot)
image.data = None
self.message = 'Loading Complete.'
print self.message
return
##############################################
# Job Processing
##############################################
def startProcessJob(self):
'''Starts a thread to process tasks in the jobqueue.'''
self.processing_job.start()
return
def processJob(self):
'''Translates a job into the appropriate method calls.
A job must be in the following form:
['task', [kwargs]]
'''
while True:
# retrieve job data
jobdata = self.jobqueue.get(block=True)
jobtype = jobdata[0]
kwargs = jobdata[1] if len(jobdata)==2 else {}
# deal with different jobs
if jobtype == 'newimage':
self.addNewImage(**kwargs)
elif jobtype == 'updatecache':
self.updateCache(*kwargs)
elif jobtype == 'initcache':
self.initCache()
elif jobtype == 'plotrr':
self.createRRPlot(*kwargs)
elif jobtype == 'changendx':
self.changeIndex(*kwargs)
elif jobtype == 'startload':
self.startLoad(*kwargs)
elif jobtype == 'updatecmap':
self.display.updateColorMap(*kwargs)
elif jobtype == 'updatemsg':
self.message = jobdata[1]
self.jobqueue.task_done()
return