Пример #1
0
def naka_rushton(data, sig=2.0, n=0.73, scaling=1.0, noise=0.0, forward=True):
    """
    Apply a Naka-Rushton response compression (n) and an adaptive shift (sig).
    
    | NK(x) = sign(x) * scaling * ((abs(x)**n) / ((abs(x)**n) + (sig**n))) + noise
    
    Args:
        :data:
            | float or ndarray
        :sig: 
            | 2.0, optional
            | Semi-saturation constant. Value for which NK(:data:) is 1/2
        :n: 
            | 0.73, optional
            | Compression power.
        :scaling:
            | 1.0, optional
            | Maximum value of NK-function.
        :noise:
            | 0.0, optional
            | Cone excitation noise.
        :forward:
            | True, optional
            | True: do NK(x) 
            | False: do NK(x)**(-1).
    
    Returns:
        :returns: 
            | float or ndarray with NK-(de)compressed input :x:        
    """
    if forward:
        return np.sign(data) * scaling * ((np.abs(data)**n) /
                                          ((np.abs(data)**n) +
                                           (sig**n))) + noise
    elif forward == False:
        Ip = sig * (((np.abs(np.abs(data) - noise)) /
                     (scaling - np.abs(np.abs(data) - noise))))**(1 / n)
        if not np.isscalar(Ip):
            p = np.where(np.abs(data) < noise)
            Ip[p] = -Ip[p]
        else:
            if np.abs(data) < noise:
                Ip = -Ip
        return Ip
Пример #2
0
def xyz_to_cct_ohno(xyzw,
                    cieobs=_CIEOBS,
                    out='cct',
                    wl=None,
                    accuracy=0.1,
                    force_out_of_lut=True,
                    upper_cct_max=10.0**20,
                    approx_cct_temp=True):
    """
    Convert XYZ tristimulus values to correlated color temperature (CCT) and 
    Duv (distance above (>0) or below (<0) the Planckian locus) 
    using Ohno's method. 
    
    Args:
        :xyzw: 
            | ndarray of tristimulus values
        :cieobs: 
            | luxpy._CIEOBS, optional
            | CMF set used to calculated xyzw.
        :out: 
            | 'cct' (or 1), optional
            | Determines what to return.
            | Other options: 'duv' (or -1), 'cct,duv'(or 2), "[cct,duv]" (or -2)
        :wl: 
            | None, optional
            | Wavelengths used when calculating Planckian radiators.
        :accuracy: 
            | float, optional
            | Stop brute-force search when cct :accuracy: is reached.
        :upper_cct_max: 
            | 10.0**20, optional
            | Limit brute-force search to this cct.
        :approx_cct_temp: 
            | True, optional
            | If True: use xyz_to_cct_HA() to get a first estimate of cct 
              to speed up search.
        :force_out_of_lut: 
            | True, optional
            | If True and cct is out of range of the LUT, then switch to 
              brute-force search method, else return numpy.nan values.
        
    Returns:
        :returns: 
            | ndarray with:
            |    cct: out == 'cct' (or 1)
            |    duv: out == 'duv' (or -1)
            |    cct, duv: out == 'cct,duv' (or 2)
            |    [cct,duv]: out == "[cct,duv]" (or -2) 
            
    Note:
        LUTs are stored in ./data/cctluts/
        
    Reference:
        1. `Ohno Y. Practical use and calculation of CCT and Duv. 
        Leukos. 2014 Jan 2;10(1):47-55.
        <http://www.tandfonline.com/doi/abs/10.1080/15502724.2014.839020>`_
    """

    xyzw = np2d(xyzw)

    if len(xyzw.shape) > 2:
        raise Exception('xyz_to_cct_ohno(): Input xyzwa.ndim must be <= 2 !')

    # get 1960 u,v of test source:
    Yuv = xyz_to_Yuv(
        xyzw)  # remove possible 1-dim + convert xyzw to CIE 1976 u',v'
    axis_of_v3 = len(Yuv.shape) - 1  # axis containing color components
    u = Yuv[:, 1, None]  # get CIE 1960 u
    v = (2.0 / 3.0) * Yuv[:, 2, None]  # get CIE 1960 v

    uv = np2d(np.concatenate((u, v), axis=axis_of_v3))

    # load cct & uv from LUT:
    if cieobs not in _CCT_LUT:
        _CCT_LUT[cieobs] = calculate_lut(ccts=None,
                                         cieobs=cieobs,
                                         add_to_lut=False)
    cct_LUT = _CCT_LUT[cieobs][:, 0, None]
    uv_LUT = _CCT_LUT[cieobs][:, 1:3]

    # calculate CCT of each uv:
    CCT = np.ones(uv.shape[0]) * np.nan  # initialize with NaN's
    Duv = CCT.copy()  # initialize with NaN's
    idx_m = 0
    idx_M = uv_LUT.shape[0] - 1
    for i in range(uv.shape[0]):
        out_of_lut = False
        delta_uv = (((uv_LUT - uv[i])**2.0).sum(
            axis=1))**0.5  # calculate distance of uv with uv_LUT
        idx_min = delta_uv.argmin()  # find index of minimum distance

        # find Tm, delta_uv and u,v for 2 points surrounding uv corresponding to idx_min:
        if idx_min == idx_m:
            idx_min_m1 = idx_min
            out_of_lut = True
        else:
            idx_min_m1 = idx_min - 1
        if idx_min == idx_M:
            idx_min_p1 = idx_min
            out_of_lut = True
        else:
            idx_min_p1 = idx_min + 1

        if (out_of_lut == True) & (force_out_of_lut
                                   == True):  # calculate using search-function
            cct_i, Duv_i = xyz_to_cct_search(xyzw[i],
                                             cieobs=cieobs,
                                             wl=wl,
                                             accuracy=accuracy,
                                             out='cct,duv',
                                             upper_cct_max=upper_cct_max,
                                             approx_cct_temp=approx_cct_temp)
            CCT[i] = cct_i
            Duv[i] = Duv_i
            continue
        elif (out_of_lut == True) & (force_out_of_lut == False):
            CCT[i] = np.nan
            Duv[i] = np.nan

        cct_m1 = cct_LUT[idx_min_m1]  # - 2*_EPS
        delta_uv_m1 = delta_uv[idx_min_m1]
        uv_m1 = uv_LUT[idx_min_m1]
        cct_p1 = cct_LUT[idx_min_p1]
        delta_uv_p1 = delta_uv[idx_min_p1]
        uv_p1 = uv_LUT[idx_min_p1]

        cct_0 = cct_LUT[idx_min]
        delta_uv_0 = delta_uv[idx_min]

        # calculate uv distance between Tm_m1 & Tm_p1:
        delta_uv_p1m1 = ((uv_p1[0] - uv_m1[0])**2.0 +
                         (uv_p1[1] - uv_m1[1])**2.0)**0.5

        # Triangular solution:
        x = ((delta_uv_m1**2) - (delta_uv_p1**2) +
             (delta_uv_p1m1**2)) / (2 * delta_uv_p1m1)
        Tx = cct_m1 + ((cct_p1 - cct_m1) * (x / delta_uv_p1m1))
        #uBB = uv_m1[0] + (uv_p1[0] - uv_m1[0]) * (x / delta_uv_p1m1)
        vBB = uv_m1[1] + (uv_p1[1] - uv_m1[1]) * (x / delta_uv_p1m1)

        Tx_corrected_triangular = Tx * 0.99991
        signDuv = np.sign(uv[i][1] - vBB)
        Duv_triangular = signDuv * np.atleast_1d(
            ((delta_uv_m1**2.0) - (x**2.0))**0.5)

        # Parabolic solution:
        a = delta_uv_m1 / (cct_m1 - cct_0 + _EPS) / (cct_m1 - cct_p1 + _EPS)
        b = delta_uv_0 / (cct_0 - cct_m1 + _EPS) / (cct_0 - cct_p1 + _EPS)
        c = delta_uv_p1 / (cct_p1 - cct_0 + _EPS) / (cct_p1 - cct_m1 + _EPS)
        A = a + b + c
        B = -(a * (cct_p1 + cct_0) + b * (cct_p1 + cct_m1) + c *
              (cct_0 + cct_m1))
        C = (a * cct_p1 * cct_0) + (b * cct_p1 * cct_m1) + (c * cct_0 * cct_m1)
        Tx = -B / (2 * A + _EPS)
        Tx_corrected_parabolic = Tx * 0.99991
        Duv_parabolic = signDuv * (A * np.power(Tx_corrected_parabolic, 2) +
                                   B * Tx_corrected_parabolic + C)

        Threshold = 0.002
        if Duv_triangular < Threshold:
            CCT[i] = Tx_corrected_triangular
            Duv[i] = Duv_triangular
        else:
            CCT[i] = Tx_corrected_parabolic
            Duv[i] = Duv_parabolic

    # Regulate output:
    if (out == 'cct') | (out == 1):
        return np2dT(CCT)
    elif (out == 'duv') | (out == -1):
        return np2dT(Duv)
    elif (out == 'cct,duv') | (out == 2):
        return np2dT(CCT), np2dT(Duv)
    elif (out == "[cct,duv]") | (out == -2):
        return np.vstack((CCT, Duv)).T
Пример #3
0
def xyz_to_cct_search(xyzw,
                      cieobs=_CIEOBS,
                      out='cct',
                      wl=None,
                      accuracy=0.1,
                      upper_cct_max=10.0**20,
                      approx_cct_temp=True):
    """
    Convert XYZ tristimulus values to correlated color temperature (CCT) and 
    Duv(distance above (> 0) or below ( < 0) the Planckian locus) by a 
    brute-force search. 

    | The algorithm uses an approximate cct_temp (HA approx., see xyz_to_cct_HA) 
      as starting point or uses the middle of the allowed cct-range 
      (1e2 K - 1e20 K, higher causes overflow) on a log-scale, then constructs 
      a 4-step section of the blackbody (Planckian) locus on which to find the
      minimum distance to the 1960 uv chromaticity of the test source.

    Args:
        :xyzw: 
            | ndarray of tristimulus values
        :cieobs: 
            | luxpy._CIEOBS, optional
            | CMF set used to calculated xyzw.
        :out: 
            | 'cct' (or 1), optional
            | Determines what to return.
            | Other options: 'duv' (or -1), 'cct,duv'(or 2), "[cct,duv]" (or -2)
        :wl: 
            | None, optional
            | Wavelengths used when calculating Planckian radiators.
        :accuracy: 
            | float, optional
            | Stop brute-force search when cct :accuracy: is reached.
        :upper_cct_max: 
            | 10.0**20, optional
            | Limit brute-force search to this cct.
        :approx_cct_temp: 
            | True, optional
            | If True: use xyz_to_cct_HA() to get a first estimate of cct to 
              speed up search.

    Returns:
        :returns: 
            | ndarray with:
            |    cct: out == 'cct' (or 1)
            |    duv: out == 'duv' (or -1)
            |    cct, duv: out == 'cct,duv' (or 2)
            |    [cct,duv]: out == "[cct,duv]" (or -2) 
    
    Notes:
        This program is more accurate, but slower than xyz_to_cct_ohno!
        Note that cct must be between 1e3 K - 1e20 K 
        (very large cct take a long time!!!)
    """

    xyzw = np2d(xyzw)

    if len(xyzw.shape) > 2:
        raise Exception('xyz_to_cct_search(): Input xyzw.shape must be <= 2 !')

    # get 1960 u,v of test source:
    Yuvt = xyz_to_Yuv(np.squeeze(
        xyzw))  # remove possible 1-dim + convert xyzw to CIE 1976 u',v'
    #axis_of_v3t = len(Yuvt.shape)-1 # axis containing color components
    ut = Yuvt[:, 1, None]  #.take([1],axis = axis_of_v3t) # get CIE 1960 u
    vt = (2 / 3) * Yuvt[:, 2,
                        None]  #.take([2],axis = axis_of_v3t) # get CIE 1960 v

    # Initialize arrays:
    ccts = np.ones((xyzw.shape[0], 1)) * np.nan
    duvs = ccts.copy()

    #calculate preliminary solution(s):
    if (approx_cct_temp == True):
        ccts_est = xyz_to_cct_HA(xyzw)
        procent_estimates = np.array([[3000.0, 100000.0, 0.05],
                                      [100000.0, 200000.0, 0.1],
                                      [200000.0, 300000.0, 0.25],
                                      [300000.0, 400000.0, 0.4],
                                      [400000.0, 600000.0, 0.4],
                                      [600000.0, 800000.0, 0.4],
                                      [800000.0, np.inf, 0.25]])
    else:
        upper_cct = np.array(upper_cct_max)
        lower_cct = np.array(10.0**2)
        cct_scale_fun = lambda x: np.log10(x)
        cct_scale_ifun = lambda x: np.power(10.0, x)
        dT = (cct_scale_fun(upper_cct) - cct_scale_fun(lower_cct)) / 2
        ccttemp = np.array([cct_scale_ifun(cct_scale_fun(lower_cct) + dT)])
        ccts_est = np2d(ccttemp * np.ones((xyzw.shape[0], 1)))
        dT_approx_cct_False = dT.copy()

    # Loop through all ccts:
    for i in range(xyzw.shape[0]):

        #initialize CCT search parameters:
        cct = np.nan
        duv = np.nan
        ccttemp = ccts_est[i].copy()

        # Take care of (-1, NaN)'s from xyz_to_cct_HA signifying (CCT < lower, CCT > upper) bounds:
        approx_cct_temp_temp = approx_cct_temp
        if (approx_cct_temp == True):
            cct_scale_fun = lambda x: x
            cct_scale_ifun = lambda x: x
            if (ccttemp != -1) & (
                    np.isnan(ccttemp) == False
            ):  # within validity range of CCT estimator-function
                for ii in range(procent_estimates.shape[0]):
                    if (ccttemp >=
                        (1.0 - 0.05 *
                         (ii == 0)) * procent_estimates[ii, 0]) & (
                             ccttemp < (1.0 + 0.05 *
                                        (ii == 0)) * procent_estimates[ii, 1]):
                        procent_estimate = procent_estimates[ii, 2]
                        break

                dT = np.multiply(
                    ccttemp, procent_estimate
                )  # determines range around CCTtemp (25% around estimate) or 100 K
            elif (ccttemp == -1) & (np.isnan(ccttemp) == False):
                ccttemp = np.array([procent_estimates[0, 0] / 2])
                procent_estimate = 1  # cover 0 K to min_CCT of estimator
                dT = np.multiply(ccttemp, procent_estimate)
            elif (np.isnan(ccttemp) == True):
                upper_cct = np.array(upper_cct_max)
                lower_cct = np.array(10.0**2)
                cct_scale_fun = lambda x: np.log10(x)
                cct_scale_ifun = lambda x: np.power(10.0, x)
                dT = (cct_scale_fun(upper_cct) - cct_scale_fun(lower_cct)) / 2
                ccttemp = np.array(
                    [cct_scale_ifun(cct_scale_fun(lower_cct) + dT)])
                approx_cct_temp = False
        else:
            dT = dT_approx_cct_False

        nsteps = 3
        signduv = 1.0
        ccttemp = ccttemp[0]
        delta_cct = dT
        while ((delta_cct > accuracy)):  # keep converging on CCT

            #generate range of ccts:
            ccts_i = cct_scale_ifun(
                np.linspace(
                    cct_scale_fun(ccttemp) - dT,
                    cct_scale_fun(ccttemp) + dT, nsteps + 1))

            ccts_i[ccts_i < 100.0] = 100.0  # avoid nan's in calculation

            # Generate BB:
            BB = cri_ref(ccts_i, wl3=wl, ref_type=['BB'], cieobs=cieobs)

            # Calculate xyz:
            xyz = spd_to_xyz(BB, cieobs=cieobs)

            # Convert to CIE 1960 u,v:
            Yuv = xyz_to_Yuv(np.squeeze(
                xyz))  # remove possible 1-dim + convert xyz to CIE 1976 u',v'
            #axis_of_v3 = len(Yuv.shape)-1 # axis containing color components
            u = Yuv[:, 1, None]  # get CIE 1960 u
            v = (2.0 / 3.0) * Yuv[:, 2, None]  # get CIE 1960 v

            # Calculate distance between list of uv's and uv of test source:
            dc = ((ut[i] - u)**2 + (vt[i] - v)**2)**0.5
            if np.isnan(dc.min()) == False:
                #eps = _EPS
                q = dc.argmin()

                if np.size(
                        q
                ) > 1:  #to minimize calculation time: only calculate median when necessary
                    cct = np.median(ccts[q])
                    duv = np.median(dc[q])
                    q = np.median(q)
                    q = int(q)  #must be able to serve as index

                else:
                    cct = ccts_i[q]
                    duv = dc[q]

                if (q == 0):
                    ccttemp = cct_scale_ifun(
                        np.array(cct_scale_fun([cct])) + 2 * dT / nsteps)
                    #dT = 2.0*dT/nsteps
                    continue  # look in higher section of planckian locus

                if (q == np.size(ccts_i)):
                    ccttemp = cct_scale_ifun(
                        np.array(cct_scale_fun([cct])) - 2 * dT / nsteps)
                    #dT = 2.0*dT/nsteps
                    continue  # look in lower section of planckian locus

                if (q > 0) & (q < np.size(ccts_i) - 1):
                    dT = 2 * dT / nsteps
                    # get Duv sign:
                    d_p1m1 = ((u[q + 1] - u[q - 1])**2.0 +
                              (v[q + 1] - v[q - 1])**2.0)**0.5

                    x = (dc[q - 1]**2.0 - dc[q + 1]**2.0 +
                         d_p1m1**2.0) / 2.0 * d_p1m1
                    vBB = v[q - 1] + ((v[q + 1] - v[q - 1]) * (x / d_p1m1))
                    signduv = np.sign(vt[i] - vBB)

                #calculate difference with previous intermediate solution:
                delta_cct = abs(cct - ccttemp)

                ccttemp = np.array(cct)  #%set new intermediate CCT
                approx_cct_temp = approx_cct_temp_temp
            else:
                ccttemp = np.nan
                cct = np.nan
                duv = np.nan

        duvs[i] = signduv * abs(duv)
        ccts[i] = cct

    # Regulate output:
    if (out == 'cct') | (out == 1):
        return np2d(ccts)
    elif (out == 'duv') | (out == -1):
        return np2d(duvs)
    elif (out == 'cct,duv') | (out == 2):
        return np2d(ccts), np2d(duvs)
    elif (out == "[cct,duv]") | (out == -2):
        return np.vstack((ccts, duvs)).T
def cie2006cmfsEx(age = 32,fieldsize = 10, wl = None,\
                  var_od_lens = 0, var_od_macula = 0, \
                  var_od_L = 0, var_od_M = 0, var_od_S = 0,\
                  var_shft_L = 0, var_shft_M = 0, var_shft_S = 0,\
                  out = 'LMS', allow_negative_values = False):
    """
    Generate Individual Observer CMFs (cone fundamentals) 
    based on CIE2006 cone fundamentals and published literature 
    on observer variability in color matching and in physiological parameters.
    
    Args:
        :age: 
            | 32 or float or int, optional
            | Observer age
        :fieldsize:
            | 10, optional
            | Field size of stimulus in degrees (between 2° and 10°).
        :wl: 
            | None, optional
            | Interpolation/extraplation of :LMS: output to specified wavelengths.
            | None: output original _WL = np.array([390,780,5])
        :var_od_lens:
            | 0, optional
            | Std Dev. in peak optical density [%] of lens.
        :var_od_macula:
            | 0, optional
            | Std Dev. in peak optical density [%] of macula.
        :var_od_L:
            | 0, optional
            | Std Dev. in peak optical density [%] of L-cone.
        :var_od_M:
            | 0, optional
            | Std Dev. in peak optical density [%] of M-cone.
        :var_od_S:
            | 0, optional
            | Std Dev. in peak optical density [%] of S-cone.
        :var_shft_L:
            | 0, optional
            | Std Dev. in peak wavelength shift [nm] of L-cone. 
        :var_shft_L:
            | 0, optional
            | Std Dev. in peak wavelength shift [nm] of M-cone.  
        :var_shft_S:
            | 0, optional
            | Std Dev. in peak wavelength shift [nm] of S-cone. 
        :out: 
            | 'LMS' or , optional
            | Determines output.
        :allow_negative_values:
            | False, optional
            | Cone fundamentals or color matching functions 
              should not have negative values.
            |     If False: X[X<0] = 0.
            
    Returns:
        :returns: 
            | - 'LMS' : ndarray with individual observer area-normalized 
            |           cone fundamentals. Wavelength have been added.
                
            | [- 'trans_lens': ndarray with lens transmission 
            |      (no wavelengths added, no interpolation)
            |  - 'trans_macula': ndarray with macula transmission 
            |      (no wavelengths added, no interpolation)
            |  - 'sens_photopig' : ndarray with photopigment sens. 
            |      (no wavelengths added, no interpolation)]
            
    References:
         1. `Asano Y, Fairchild MD, and Blondé L (2016). 
         Individual Colorimetric Observer Model. 
         PLoS One 11, 1–19. 
         <http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0145671>`_
        
         2. `Asano Y, Fairchild MD, Blondé L, and Morvan P (2016). 
         Color matching experiment for highlighting interobserver variability. 
         Color Res. Appl. 41, 530–539. 
         <https://onlinelibrary.wiley.com/doi/abs/10.1002/col.21975>`_
         
         3. `CIE, and CIE (2006). 
         Fundamental Chromaticity Diagram with Physiological Axes - Part I 
         (Vienna: CIE). 
         <http://www.cie.co.at/publications/fundamental-chromaticity-diagram-physiological-axes-part-1>`_ 
         
         4. `Asano's Individual Colorimetric Observer Model 
         <https://www.rit.edu/cos/colorscience/re_AsanoObserverFunctions.php>`_
    """
    fs = fieldsize
    rmd = _INDVCMF_DATA['rmd'].copy()
    LMSa = _INDVCMF_DATA['LMSa'].copy()
    docul = _INDVCMF_DATA['docul'].copy()

    # field size corrected macular density:
    pkOd_Macula = 0.485 * np.exp(-fs / 6.132) * (
        1 + var_od_macula / 100)  # varied peak optical density of macula
    corrected_rmd = rmd * pkOd_Macula

    # age corrected lens/ocular media density:
    if (age <= 60):
        correct_lomd = docul[:1] * (1 + 0.02 * (age - 32)) + docul[1:2]
    else:
        correct_lomd = docul[:1] * (1.56 + 0.0667 * (age - 60)) + docul[1:2]
    correct_lomd = correct_lomd * (1 + var_od_lens / 100
                                   )  # varied overall optical density of lens

    # Peak Wavelength Shift:
    wl_shifted = np.empty(LMSa.shape)
    wl_shifted[0] = _WL + var_shft_L
    wl_shifted[1] = _WL + var_shft_M
    wl_shifted[2] = _WL + var_shft_S

    LMSa_shft = np.empty(LMSa.shape)
    kind = 'cubic'
    LMSa_shft[0] = interpolate.interp1d(wl_shifted[0],
                                        LMSa[0],
                                        kind=kind,
                                        bounds_error=False,
                                        fill_value="extrapolate")(_WL)
    LMSa_shft[1] = interpolate.interp1d(wl_shifted[1],
                                        LMSa[1],
                                        kind=kind,
                                        bounds_error=False,
                                        fill_value="extrapolate")(_WL)
    LMSa_shft[2] = interpolate.interp1d(wl_shifted[2],
                                        LMSa[2],
                                        kind=kind,
                                        bounds_error=False,
                                        fill_value="extrapolate")(_WL)
    #    LMSa[2,np.where(_WL >= _WL_CRIT)] = 0 #np.nan # Not defined above 620nm
    #    LMSa_shft[2,np.where(_WL >= _WL_CRIT)] = 0

    ssw = np.hstack(
        (0, np.sign(np.diff(LMSa_shft[2, :]))
         ))  #detect poor interpolation (sign switch due to instability)
    LMSa_shft[2, np.where((ssw >= 0) & (_WL > 560))] = np.nan

    # corrected LMS (no age correction):
    pkOd_L = (0.38 + 0.54 * np.exp(-fs / 1.333)) * (
        1 + var_od_L / 100)  # varied peak optical density of L-cone
    pkOd_M = (0.38 + 0.54 * np.exp(-fs / 1.333)) * (
        1 + var_od_M / 100)  # varied peak optical density of M-cone
    pkOd_S = (0.30 + 0.45 * np.exp(-fs / 1.333)) * (
        1 + var_od_S / 100)  # varied peak optical density of S-cone

    alpha_lms = 0. * LMSa_shft
    alpha_lms[0] = 1 - 10**(-pkOd_L * (10**LMSa_shft[0]))
    alpha_lms[1] = 1 - 10**(-pkOd_M * (10**LMSa_shft[1]))
    alpha_lms[2] = 1 - 10**(-pkOd_S * (10**LMSa_shft[2]))

    # this fix is required because the above math fails for alpha_lms[2,:]==0
    alpha_lms[2, np.where(_WL >= _WL_CRIT)] = 0

    # Corrected to Corneal Incidence:
    lms_barq = alpha_lms * (10**(-corrected_rmd - correct_lomd)) * np.ones(
        alpha_lms.shape)

    # Corrected to Energy Terms:
    lms_bar = lms_barq * _WL

    # Set NaN values to zero:
    lms_bar[np.isnan(lms_bar)] = 0

    # normalized:
    LMS = 100 * lms_bar / np.nansum(lms_bar, axis=1, keepdims=True)

    # Output extra:
    trans_lens = 10**(-correct_lomd)
    trans_macula = 10**(-corrected_rmd)
    sens_photopig = alpha_lms * _WL

    # Add wavelengths:
    LMS = np.vstack((_WL, LMS))

    if ('xyz' in out.lower().split(',')):
        LMS = lmsb_to_xyzb(LMS,
                           fieldsize,
                           out='xyz',
                           allow_negative_values=allow_negative_values)
        out = out.replace('xyz', 'LMS').replace('XYZ', 'LMS')
    if ('lms' in out.lower().split(',')):
        out = out.replace('lms', 'LMS')

    # Interpolate/extrapolate:
    if wl is None:
        interpolation = None
    else:
        interpolation = 'cubic'
    LMS = spd(LMS, wl=wl, interpolation=interpolation, norm_type='area')

    if (out == 'LMS'):
        return LMS
    elif (out == 'LMS,trans_lens,trans_macula,sens_photopig'):
        return LMS, trans_lens, trans_macula, sens_photopig
    elif (out == 'LMS,trans_lens,trans_macula,sens_photopig,LMSa'):
        return LMS, trans_lens, trans_macula, sens_photopig, LMSa
    else:
        return eval(out)
Пример #5
0
def Ydlep_to_xyz(Ydlep,
                 cieobs=_CIEOBS,
                 xyzw=_COLORTF_DEFAULT_WHITE_POINT,
                 flip_axes=False,
                 **kwargs):
    """
    Convert Y, dominant (complementary) wavelength and excitation purity to XYZ
    tristimulus values.

    Args:
        :Ydlep: 
            | ndarray with Y, dominant (complementary) wavelength
              and excitation purity
        :xyzw: 
            | None or narray with tristimulus values of a single (!) native white point, optional
            | None defaults to xyz of CIE D65 using the :cieobs: observer.
        :cieobs:
            | luxpy._CIEOBS, optional
            | CMF set to use when calculating spectrum locus coordinates.
        :flip_axes:
            | False, optional
            | If True: flip axis 0 and axis 1 in Ydelep to increase speed of loop in function.
            |          (single xyzw with is not flipped!)
    Returns:
        :xyz: 
            | ndarray with tristimulus values
    """

    Ydlep3 = np3d(Ydlep).copy().astype(np.float)

    # flip axis so that longest dim is on first axis  (save time in looping):
    if (Ydlep3.shape[0] < Ydlep3.shape[1]) & (flip_axes == True):
        axes12flipped = True
        Ydlep3 = Ydlep3.transpose((1, 0, 2))
    else:
        axes12flipped = False

    # convert xyzw to Yxyw:
    Yxyw = xyz_to_Yxy(xyzw)
    Yxywo = Yxyw.copy()

    # get spectrum locus Y,x,y and wavelengths:
    SL = _CMF[cieobs]['bar']
    wlsl = SL[0, None].T
    Yxysl = xyz_to_Yxy(SL[1:4].T)[:, None]

    # center on xyzw:
    Yxysl = Yxysl - Yxyw
    Yxyw = Yxyw - Yxyw

    #split:
    Y, dom, pur = asplit(Ydlep3)
    Yw, xw, yw = asplit(Yxyw)
    Ywo, xwo, ywo = asplit(Yxywo)
    Ysl, xsl, ysl = asplit(Yxysl)

    # loop over longest dim:
    x = np.empty(Y.shape)
    y = np.empty(Y.shape)
    for i in range(Ydlep3.shape[1]):

        # find closest wl's to dom:
        #wlslb,wlib = meshblock(wlsl,np.abs(dom[i,:])) #abs because dom<0--> complemtary wl
        wlib, wlslb = np.meshgrid(np.abs(dom[:, i]), wlsl)

        dwl = np.abs(wlslb - wlib)
        q1 = dwl.argmin(axis=0)  # index of closest wl
        dwl[q1] = 10000.0
        q2 = dwl.argmin(axis=0)  # index of second closest wl

        # calculate x,y of dom:
        x_dom_wl = xsl[q1, 0] + (xsl[q2, 0] - xsl[q1, 0]) * (
            np.abs(dom[:, i]) - wlsl[q1, 0]) / (wlsl[q2, 0] - wlsl[q1, 0]
                                                )  # calculate x of dom. wl
        y_dom_wl = ysl[q1, 0] + (ysl[q2, 0] - ysl[q1, 0]) * (
            np.abs(dom[:, i]) - wlsl[q1, 0]) / (wlsl[q2, 0] - wlsl[q1, 0]
                                                )  # calculate y of dom. wl

        # calculate x,y of test:
        d_wl = (x_dom_wl**2.0 +
                y_dom_wl**2.0)**0.5  # distance from white point to dom
        d = pur[:, i] * d_wl
        hdom = math.positive_arctan(x_dom_wl, y_dom_wl, htype='deg')
        x[:, i] = d * np.cos(hdom * np.pi / 180.0)
        y[:, i] = d * np.sin(hdom * np.pi / 180.0)

        # complementary:
        pc = np.where(dom[:, i] < 0.0)
        hdom[pc] = hdom[pc] - np.sign(dom[:, i][pc] -
                                      180.0) * 180.0  # get positive hue angle

        # calculate intersection of line through white point and test point and purple line:
        xy = np.vstack((x_dom_wl, y_dom_wl)).T
        xyw = np.vstack((xw, yw)).T
        xypl1 = np.vstack((xsl[0, None], ysl[0, None])).T
        xypl2 = np.vstack((xsl[-1, None], ysl[-1, None])).T
        da = (xy - xyw)
        db = (xypl2 - xypl1)
        dp = (xyw - xypl1)
        T = np.array([[0.0, -1.0], [1.0, 0.0]])
        dap = np.dot(da, T)
        denom = np.sum(dap * db, axis=1, keepdims=True)
        num = np.sum(dap * dp, axis=1, keepdims=True)
        xy_linecross = (num / denom) * db + xypl1
        d_linecross = np.atleast_2d(
            (xy_linecross[:, 0]**2.0 + xy_linecross[:, 1]**2.0)**0.5).T[:, 0]
        x[:, i][pc] = pur[:, i][pc] * d_linecross[pc] * np.cos(
            hdom[pc] * np.pi / 180)
        y[:, i][pc] = pur[:, i][pc] * d_linecross[pc] * np.sin(
            hdom[pc] * np.pi / 180)
    Yxy = np.dstack((Ydlep3[:, :, 0], x + xwo, y + ywo))
    if axes12flipped == True:
        Yxy = Yxy.transpose((1, 0, 2))
    else:
        Yxy = Yxy.transpose((0, 1, 2))
    return Yxy_to_xyz(Yxy).reshape(Ydlep.shape)
Пример #6
0
def xyz_to_Ydlep(xyz,
                 cieobs=_CIEOBS,
                 xyzw=_COLORTF_DEFAULT_WHITE_POINT,
                 flip_axes=False,
                 **kwargs):
    """
    Convert XYZ tristimulus values to Y, dominant (complementary) wavelength
    and excitation purity.

    Args:
        :xyz:
            | ndarray with tristimulus values
        :xyzw:
            | None or ndarray with tristimulus values of a single (!) native white point, optional
            | None defaults to xyz of CIE D65 using the :cieobs: observer.
        :cieobs:
            | luxpy._CIEOBS, optional
            | CMF set to use when calculating spectrum locus coordinates.
        :flip_axes:
            | False, optional
            | If True: flip axis 0 and axis 1 in Ydelep to increase speed of loop in function.
            |          (single xyzw with is not flipped!)
    Returns:
        :Ydlep: 
            | ndarray with Y, dominant (complementary) wavelength
              and excitation purity
    """

    xyz3 = np3d(xyz).copy().astype(np.float)

    # flip axis so that shortest dim is on axis0 (save time in looping):
    if (xyz3.shape[0] < xyz3.shape[1]) & (flip_axes == True):
        axes12flipped = True
        xyz3 = xyz3.transpose((1, 0, 2))
    else:
        axes12flipped = False

    # convert xyz to Yxy:
    Yxy = xyz_to_Yxy(xyz3)
    Yxyw = xyz_to_Yxy(xyzw)

    # get spectrum locus Y,x,y and wavelengths:
    SL = _CMF[cieobs]['bar']

    wlsl = SL[0]
    Yxysl = xyz_to_Yxy(SL[1:4].T)[:, None]

    # center on xyzw:
    Yxy = Yxy - Yxyw
    Yxysl = Yxysl - Yxyw
    Yxyw = Yxyw - Yxyw

    #split:
    Y, x, y = asplit(Yxy)
    Yw, xw, yw = asplit(Yxyw)
    Ysl, xsl, ysl = asplit(Yxysl)

    # calculate hue:
    h = math.positive_arctan(x, y, htype='deg')

    hsl = math.positive_arctan(xsl, ysl, htype='deg')

    hsl_max = hsl[0]  # max hue angle at min wavelength
    hsl_min = hsl[-1]  # min hue angle at max wavelength

    dominantwavelength = np.empty(Y.shape)
    purity = np.empty(Y.shape)
    for i in range(xyz3.shape[1]):

        # find index of complementary wavelengths/hues:
        pc = np.where(
            (h[:, i] >= hsl_max) & (h[:, i] <= hsl_min + 360.0)
        )  # hue's requiring complementary wavelength (purple line)
        h[:, i][pc] = h[:, i][pc] - np.sign(
            h[:, i][pc] - 180.0
        ) * 180.0  # add/subtract 180° to get positive complementary wavelength

        # find 2 closest hues in sl:
        #hslb,hib = meshblock(hsl,h[:,i:i+1])
        hib, hslb = np.meshgrid(h[:, i:i + 1], hsl)
        dh = np.abs(hslb - hib)
        q1 = dh.argmin(axis=0)  # index of closest hue
        dh[q1] = 1000.0
        q2 = dh.argmin(axis=0)  # index of second closest hue

        dominantwavelength[:, i] = wlsl[q1] + np.divide(
            np.multiply((wlsl[q2] - wlsl[q1]),
                        (h[:, i] - hsl[q1, 0])), (hsl[q2, 0] - hsl[q1, 0])
        )  # calculate wl corresponding to h: y = y1 + (y2-y1)*(x-x1)/(x2-x1)
        dominantwavelength[:, i][pc] = -dominantwavelength[:, i][
            pc]  #complementary wavelengths are specified by '-' sign

        # calculate excitation purity:
        x_dom_wl = xsl[q1, 0] + (xsl[q2, 0] - xsl[q1, 0]) * (h[:, i] - hsl[
            q1, 0]) / (hsl[q2, 0] - hsl[q1, 0])  # calculate x of dom. wl
        y_dom_wl = ysl[q1, 0] + (ysl[q2, 0] - ysl[q1, 0]) * (h[:, i] - hsl[
            q1, 0]) / (hsl[q2, 0] - hsl[q1, 0])  # calculate y of dom. wl
        d_wl = (x_dom_wl**2.0 +
                y_dom_wl**2.0)**0.5  # distance from white point to sl
        d = (x[:, i]**2.0 +
             y[:, i]**2.0)**0.5  # distance from white point to test point
        purity[:, i] = d / d_wl

        # correct for those test points that have a complementary wavelength
        # calculate intersection of line through white point and test point and purple line:
        xy = np.vstack((x[:, i], y[:, i])).T
        xyw = np.hstack((xw, yw))
        xypl1 = np.hstack((xsl[0, None], ysl[0, None]))
        xypl2 = np.hstack((xsl[-1, None], ysl[-1, None]))
        da = (xy - xyw)
        db = (xypl2 - xypl1)
        dp = (xyw - xypl1)
        T = np.array([[0.0, -1.0], [1.0, 0.0]])
        dap = np.dot(da, T)
        denom = np.sum(dap * db, axis=1, keepdims=True)
        num = np.sum(dap * dp, axis=1, keepdims=True)
        xy_linecross = (num / denom) * db + xypl1
        d_linecross = np.atleast_2d(
            (xy_linecross[:, 0]**2.0 + xy_linecross[:, 1]**2.0)**0.5).T  #[0]
        purity[:, i][pc] = d[pc] / d_linecross[pc][:, 0]
    Ydlep = np.dstack((xyz3[:, :, 1], dominantwavelength, purity))

    if axes12flipped == True:
        Ydlep = Ydlep.transpose((1, 0, 2))
    else:
        Ydlep = Ydlep.transpose((0, 1, 2))
    return Ydlep.reshape(xyz.shape)
Пример #7
0
def plot_cri_graphics(data, cri_type = None, hbins = 16, start_hue = 0.0, scalef = 100, \
                      plot_axis_labels = False, bin_labels = None, plot_edge_lines = True, \
                      plot_center_lines = False, plot_bin_colors = True, \
                      axtype = 'polar', ax = None, force_CVG_layout = True,
                      vf_model_type = _VF_MODEL_TYPE, vf_pcolorshift = _VF_PCOLORSHIFT, vf_color = 'k', \
                      vf_bin_labels = _VF_PCOLORSHIFT['labels'], vf_plot_bin_colors = True, \
                      scale_vf_chroma_to_sample_chroma = False,\
                      plot_VF = True, plot_CF = False, plot_SF = False):
    """
    Plot graphical information on color rendition properties.
    
    Args:
        :data: 
            | ndarray with spectral data or dict with pre-computed metrics.
        :cri_type:
            | None, optional
            | If None: defaults to cri_type = 'iesrf'.
            | :hbins:, :start_hue: and :scalef: are ignored if cri_type not None 
            | and values are replaced by those in cri_type['rg_pars']
        :hbins:
            | 16 or ndarray with sorted hue bin centers (°), optional
        :start_hue: 
            | 0.0, optional
        :scalef:
            | 100, optional
            | Scale factor for graphic.
        :plot_axis_labels:
            | False, optional
            | Turns axis ticks on/off (True/False).
        :bin_labels: 
            | None or list[str] or '#', optional
            | Plots labels at the bin center hues.
            |   - None: don't plot.
            |   - list[str]: list with str for each bin. 
            |                (len(:bin_labels:) = :nhbins:)
            |   - '#': plots number.
        :plot_edge_lines:
            | True or False, optional
            | Plot grey bin edge lines with '--'.
        :plot_center_lines:
            | False or True, optional
            | Plot colored lines at 'center' of hue bin.
        :plot_bin_colors: 
            | True, optional
            | Colorize hue bins.
        :axtype: 
            | 'polar' or 'cart', optional
            | Make polar or Cartesian plot.
        :ax: 
            | None or 'new' or 'same', optional
            |   - None or 'new' creates new plot
            |   - 'same': continue plot on same axes.
            |   - axes handle: plot on specified axes.
        :force_CVG_layout: 
            | False or True, optional
            | True: Force plot of basis of CVG.
        :vf_model_type: 
            | _VF_MODEL_TYPE or 'M6' or 'M5', optional
            | Type of polynomial vector field model to use for the calculation of
              base color shift and metameric uncertainty.
        :vf_pcolorshift:
            | _VF_PCOLORSHIFT or user defined dict, optional
            | The polynomial models of degree 5 and 6 can be fully specified or 
              summarized by the model parameters themselved OR by calculating the
              dCoverC and dH at resp. 5 and 6 hues. :VF_pcolorshift: specifies 
              these hues and chroma level.
        :vf_color:
            | 'k', optional
            | For plotting the vector fields.
        :vf_plot_bin_colors: 
            | True, optional
            | Colorize hue bins of VF graph.
        :scale_vf_chroma_to_sample_chroma:
            | False, optional
            | Scale chroma of reference and test vf fields such that average of 
              binned reference chroma equals that of the binned sample chroma
              before calculating hue bin metrics.
        :vf_bin_labels:
            | see :bin_labels:
            | Set VF model hue-bin labels.
        :plot_CF:
            | False, optional
            | Plot circle fields.
        :plot_VF:
            | True, optional
            | Plot vector fields.
        :plot_SF:
            | True, optional
            | Plot sample shifts.   
            
    Returns:
        :returns: 
            | (data, 
            | [plt.gcf(),ax_spd, ax_CVG, ax_locC, ax_locH, ax_VF], 
            | cmap )
            | 
            | :data: dict with color rendering data
            | with keys:
            | - 'SPD'  : ndarray test SPDs
            | - 'bjabt': ndarray with binned jab data under test SPDs
            | - 'bjabr': ndarray with binned jab data under reference SPDs
            | - 'cct'  : ndarray with CCT of test SPD
            | - 'duv'  : ndarray with distance to blackbody locus of test SPD
            | - 'Rf'   : ndarray with general color fidelity indices
            | - 'Rg'   : ndarray with gamut area indices
            | - 'Rfi'  : ndarray with specific color fidelity indices
            | - 'Rfhi' : ndarray with local (hue binned) fidelity indices
            | - 'Rcshi': ndarray with local chroma shifts indices
            | - 'Rhshi': ndarray with local hue shifts indices
            | - 'Rt'  : ndarray with general metameric uncertainty index Rt
            | - 'Rti' : ndarray with specific metameric uncertainty indices Rti
            | - 'Rfhi_vf' : ndarray with local (hue binned) fidelity indices 
            |               obtained from VF model predictions at color space
            |               pixel coordinates
            | - 'Rcshi_vf': ndarray with local chroma shifts indices 
            |               (same as above)
            | - 'Rhshi_vf': ndarray with local hue shifts indices 
            |               (same as above)
            |    
            | :[...]: list with handles to current figure and 5 axes.
            |
            | :cmap: list with rgb colors for hue bins 
                    (for use in other plotting fcns)
        
    """
    if not isinstance(data,dict):
        data = spd_to_ies_tm30_metrics(data, cri_type = cri_type, hbins = hbins, start_hue = start_hue, scalef = scalef, vf_model_type = vf_model_type, vf_pcolorshift = vf_pcolorshift, scale_vf_chroma_to_sample_chroma = scale_vf_chroma_to_sample_chroma)

    Rcshi, Rf, Rfchhi_vf, Rfhi, Rfhi_vf, Rfhshi_vf, Rfi,  Rg, Rhshi, Rt, Rti, SPD, bjabr, bjabt, cct, cri_type, dataVF, duv = [data[x] for x in sorted(data.keys())]
    hbins = cri_type['rg_pars']['nhbins']
    start_hue = cri_type['rg_pars']['start_hue']
    scalef = cri_type['rg_pars']['normalized_chroma_ref']
        
    #layout = np.array([[3,3,0,0],[1,0,2,2],[0,0,2,1],[2,2,1,1],[0,2,1,1],[1,2,1,1]])
    #layout = np.array([[6,6,0,0],[0,3,3,3],[3,3,3,3],[0,0,3,2],[2,2,2,2],[2,0,2,2],[4,0,2,2]])
    layout = np.array([[6,7,0,0],[0,4,3,3],[3,4,3,3],[0,0,4,2],[2,0,2,2],[4,2,2,2],[4,0,2,2],[2,2,2,2]])
    
    def create_subplot(layout,n, polar = False, frameon = True):
        ax = plt.subplot2grid(layout[0,0:2], layout[n,0:2], colspan = layout[n,2], rowspan = layout[n,3], polar = polar, frameon = frameon)
        return ax
    
    for i in range(cct.shape[0]):
        
        fig = plt.figure(figsize=(10, 6), dpi=144)
    
        # Plot CVG:
        ax_CVG = create_subplot(layout,1, polar = True, frameon = False)
        figCVG, ax, cmap = plot_ColorVectorGraphic(bjabt[...,i,:], bjabr[...,i,:], hbins = hbins, axtype = axtype, ax = ax_CVG, plot_center_lines = plot_center_lines, plot_edge_lines = plot_edge_lines,  plot_bin_colors = plot_bin_colors, scalef = scalef, force_CVG_layout = force_CVG_layout, bin_labels = '#')
        
        # Plot VF:
        ax_VF = create_subplot(layout,2, polar = True, frameon = False)
        if i == 0:
            hbin_cmap = None
    
        ax_VF, hbin_cmap = plot_VF_PX_models([dataVF[i]], dataPX = None, plot_VF = plot_VF, plot_PX = None, axtype = 'polar', ax = ax_VF, \
                           plot_circle_field = plot_CF, plot_sample_shifts = plot_SF, plot_bin_colors = vf_plot_bin_colors, \
                           plot_samples_shifts_at_pixel_center = False, jabp_sampled = None, \
                           plot_VF_colors = [vf_color], plot_PX_colors = ['r'], hbin_cmap = hbin_cmap, force_CVG_layout = True, bin_labels = vf_bin_labels)
    
        # Plot test SPD:
        ax_spd = create_subplot(layout,3)
        ax_spd.plot(SPD[0],SPD[i+1]/SPD[i+1].max(),'r-')
        ax_spd.text(730,0.9,'CCT = {:1.0f} K'.format(cct[i][0]),fontsize = 9, horizontalalignment='left',verticalalignment='center',rotation = 0, color = np.array([1,1,1])*0.3)
        ax_spd.text(730,0.8,'Duv = {:1.4f}'.format(duv[i][0]),fontsize = 9, horizontalalignment='left',verticalalignment='center',rotation = 0, color = np.array([1,1,1])*0.3)
        ax_spd.text(730,0.7,'IES Rf = {:1.0f}'.format(Rf[:,i][0]),fontsize = 9, horizontalalignment='left',verticalalignment='center',rotation = 0, color = np.array([1,1,1])*0.3)
        ax_spd.text(730,0.6,'IES Rg = {:1.0f}'.format(Rg[:,i][0]),fontsize = 9, horizontalalignment='left',verticalalignment='center',rotation = 0, color = np.array([1,1,1])*0.3)
        ax_spd.text(730,0.5,'Rt = {:1.0f}'.format(Rt[:,i][0]),fontsize = 9, horizontalalignment='left',verticalalignment='center',rotation = 0, color = np.array([1,1,1])*0.3)
        ax_spd.set_xlabel('Wavelength (nm)', fontsize = 9)
        ax_spd.set_ylabel('Rel. spectral intensity', fontsize = 9)
        ax_spd.set_xlim([360,830])
        
        # Plot local color fidelity, Rfhi:
        ax_Rfi = create_subplot(layout,4)
        for j in range(hbins):
            ax_Rfi.bar(range(hbins)[j],Rfhi[j,i], color = cmap[j], width = 1,edgecolor = 'k', alpha = 0.4)
            ax_Rfi.text(range(hbins)[j],Rfhi[j,i]*1.1, '{:1.0f}'.format(Rfhi[j,i]) ,fontsize = 9,horizontalalignment='center',verticalalignment='center',color = np.array([1,1,1])*0.3)
        ax_Rfi.set_ylim([0,120])
        xticks = np.arange(hbins)
        xtickslabels = ['{:1.0f}'.format(ii+1) for ii in range(hbins)]
        ax_Rfi.set_xticks(xticks)
        ax_Rfi.set_xticklabels(xtickslabels, fontsize = 8)
        ax_Rfi.set_ylabel(r'Local color fidelity $R_{f,hi}$')
        ax_Rfi.set_xlabel('Hue bin #')
        
        # Plot local chroma shift, Rcshi:
        ax_locC = create_subplot(layout,5)
        for j in range(hbins):
            ax_locC.bar(range(hbins)[j],Rcshi[j,i], color = cmap[j], width = 1,edgecolor = 'k', alpha = 0.4)
            ax_locC.text(range(hbins)[j],-np.sign(Rcshi[j,i])*0.1, '{:1.0f}%'.format(100*Rcshi[j,i]) ,fontsize = 9,horizontalalignment='center',verticalalignment='center',rotation = 90, color = np.array([1,1,1])*0.3)
        ylim = np.array([np.abs(Rcshi.min()),np.abs(Rcshi.min()),0.2]).max()*1.5
        ax_locC.set_ylim([-ylim,ylim])
        ax_locC.set_ylabel(r'Local chroma shift, $R_{cs,hi}$')
        ax_locC.set_xticklabels([])
        ax_locC.set_yticklabels(['{:1.2f}'.format(ii) for ii in ax_locC.set_ylim()], color = 'white')
        
        # Plot local hue shift, Rhshi:
        ax_locH = create_subplot(layout,6)
        for j in range(hbins):
            ax_locH.bar(range(hbins)[j],Rhshi[j,i], color = cmap[j], width = 1,edgecolor = 'k', alpha = 0.4)
            ax_locH.text(range(hbins)[j],-np.sign(Rhshi[j,i])*0.2, '{:1.3f}'.format(Rhshi[j,i]) ,fontsize = 9,horizontalalignment='center',verticalalignment='center',rotation = 90, color = np.array([1,1,1])*0.3)
        ylim = np.array([np.abs(Rhshi.min()),np.abs(Rhshi.min()),0.2]).max()*1.5
        ax_locH.set_ylim([-ylim,ylim])
        ax_locH.set_ylabel(r'Local hue shift, $R_{hs,hi}$')
        ax_locH.set_xticklabels([])
        ax_locH.set_yticklabels(['{:1.2f}'.format(ii) for ii in ax_locH.set_ylim()], color = 'white')
              
        # Plot local color fidelity of VF, vfRfhi:
        ax_vfRfi = create_subplot(layout,7)
        for j in range(hbins):
            ax_vfRfi.bar(range(hbins)[j],Rfhi_vf[j,i], color = cmap[j], width = 1,edgecolor = 'k', alpha = 0.4)
            ax_vfRfi.text(range(hbins)[j],Rfhi_vf[j,i]*1.1, '{:1.0f}'.format(Rfhi_vf[j,i]) ,fontsize = 9,horizontalalignment='center',verticalalignment='center',color = np.array([1,1,1])*0.3)
        ax_vfRfi.set_ylim([0,120])
        xticks = np.arange(hbins)
        xtickslabels = ['{:1.0f}'.format(ii+1) for ii in range(hbins)]
        ax_vfRfi.set_xticks(xticks)
        ax_vfRfi.set_xticklabels(xtickslabels, fontsize = 8)
        ax_vfRfi.set_ylabel(r'Local VF color fidelity $vfR_{f,hi}$')
        ax_vfRfi.set_xlabel('Hue bin #')
       
        plt.tight_layout()
        
    return  data,  [plt.gcf(),ax_spd, ax_CVG, ax_locC, ax_locH, ax_VF], cmap
Пример #8
0
def cam_sww16(data, dataw = None, Yb = 20.0, Lw = 400.0, Ccwb = None, relative = True, \
              parameters = None, inputtype = 'xyz', direction = 'forward', \
              cieobs = '2006_10'):
    """
    A simple principled color appearance model based on a mapping 
    of the Munsell color system.
    
    | This function implements the JOSA A (parameters = 'JOSA') published model. 
    
    Args:
        :data: 
            | ndarray with input tristimulus values 
            | or spectral data 
            | or input color appearance correlates
            | Can be of shape: (N [, xM], x 3), whereby: 
            | N refers to samples and M refers to light sources.
            | Note that for spectral input shape is (N x (M+1) x wl) 
        :dataw: 
            | None or ndarray, optional
            | Input tristimulus values or spectral data of white point.
            | None defaults to the use of CIE illuminant C.
        :Yb: 
            | 20.0, optional
            | Luminance factor of background (perfect white diffuser, Yw = 100)
        :Lw:
            | 400.0, optional
            | Luminance (cd/m²) of white point.
        :Ccwb:
            | None,  optional
            | Degree of cognitive adaptation (white point balancing)
            | If None: use [..,..] from parameters dict.
        :relative:
            | True or False, optional
            | True: xyz tristimulus values are relative (Yw = 100)
        :parameters:
            | None or str or dict, optional
            | Dict with model parameters.
            |    - None: defaults to luxpy.cam._CAM_SWW_2016_PARAMETERS['JOSA']
            |    - str: 'best-fit-JOSA' or 'best-fit-all-Munsell'
            |    - dict: user defined model parameters 
            |            (dict should have same structure)
        :inputtype:
            | 'xyz' or 'spd', optional
            | Specifies the type of input: 
            |     tristimulus values or spectral data for the forward mode.
        :direction:
            | 'forward' or 'inverse', optional
            |   -'forward': xyz -> cam_sww_2016
            |   -'inverse': cam_sww_2016 -> xyz 
        :cieobs:
            | '2006_10', optional
            | CMF set to use to perform calculations where spectral data 
              is involved (inputtype == 'spd'; dataw = None)
            | Other options: see luxpy._CMF['types']
    
    Returns:
        :returns: 
            | ndarray with color appearance correlates (:direction: == 'forward')
            |  or 
            | XYZ tristimulus values (:direction: == 'inverse')
    
    Notes:
        | This function implements the JOSA A (parameters = 'JOSA') 
          published model. 
        | With:
        |    1. A correction for the parameter 
        |         in Eq.4 of Fig. 11: 0.952 --> -0.952 
        |         
        |     2. The delta_ac and delta_bc white-balance shifts in Eq. 5e & 5f 
        |         should be: -0.028 & 0.821 
        |  
        |     (cfr. Ccwb = 0.66 in: 
        |         ab_test_out = ab_test_int - Ccwb*ab_gray_adaptation_field_int))
             
    References:
        1. `Smet, K. A. G., Webster, M. A., & Whitehead, L. A. (2016). 
        A simple principled approach for modeling and understanding uniform color metrics. 
        Journal of the Optical Society of America A, 33(3), A319–A331. 
        <https://doi.org/10.1364/JOSAA.33.00A319>`_

    """

    # get model parameters
    args = locals().copy() 
    if parameters is None:
        parameters = _CAM_SWW16_PARAMETERS['JOSA']
    if isinstance(parameters,str):
        parameters = _CAM_SWW16_PARAMETERS[parameters]
    parameters = put_args_in_db(parameters,args)  #overwrite parameters with other (not-None) args input 
      
    #unpack model parameters:
    Cc, Ccwb, Cf, Mxyz2lms, cLMS, cab_int, cab_out, calpha, cbeta,cga1, cga2, cgb1, cgb2, cl_int, clambda, lms0  = [parameters[x] for x in sorted(parameters.keys())]
    
    # setup default adaptation field:   
    if (dataw is None):
        dataw = _CIE_ILLUMINANTS['C'].copy() # get illuminant C
        xyzw = spd_to_xyz(dataw, cieobs = cieobs,relative=False) # get abs. tristimulus values
        if relative == False: #input is expected to be absolute
            dataw[1:] = Lw*dataw[1:]/xyzw[:,1:2] #dataw = Lw*dataw # make absolute
        else:
            dataw = dataw # make relative (Y=100)
        if inputtype == 'xyz':
            dataw = spd_to_xyz(dataw, cieobs = cieobs, relative = relative)

    # precomputations:
    Mxyz2lms = np.dot(np.diag(cLMS),math.normalize_3x3_matrix(Mxyz2lms, np.array([[1, 1, 1]]))) # normalize matrix for xyz-> lms conversion to ill. E weighted with cLMS   
    invMxyz2lms = np.linalg.inv(Mxyz2lms)
    MAab = np.array([clambda,calpha,cbeta])
    invMAab = np.linalg.inv(MAab)
    
    #initialize data and camout:
    data = np2d(data).copy() # stimulus data (can be upto NxMx3 for xyz, or [N x (M+1) x wl] for spd))
    dataw = np2d(dataw).copy() # white point (can be upto Nx3 for xyz, or [(N+1) x wl] for spd)

    # make axis 1 of dataw have 'same' dimensions as data:         
    if (data.ndim == 2): 
        data = np.expand_dims(data, axis = 1)  # add light source axis 1     

    if inputtype == 'xyz': 
        if dataw.shape[0] == 1: #make dataw have same lights source dimension size as data
            dataw = np.repeat(dataw,data.shape[1],axis=0)                
    else:
        if dataw.shape[0] == 2:
            dataw = np.vstack((dataw[0],np.repeat(dataw[1:], data.shape[1], axis = 0)))

    # Flip light source dim to axis 0:
    data = np.transpose(data, axes = (1,0,2))
  
    # Initialize output array:
    dshape = list(data.shape)
    dshape[-1] = 3 # requested number of correlates: l_int, a_int, b_int
    if (inputtype != 'xyz') & (direction == 'forward'):
        dshape[-2] = dshape[-2] - 1 # wavelength row doesn't count & only with forward can the input data be spectral
    camout = np.nan*np.ones(dshape)

    # apply forward/inverse model for each row in data:
    for i in range(data.shape[0]):

        # stage 1: calculate photon rates of stimulus and adapting field, lmst & lmsf:
        if (inputtype != 'xyz'):            
            if relative == True:
                xyzw_abs = spd_to_xyz(np.vstack((dataw[0],dataw[i+1])), cieobs = cieobs, relative = False)
                dataw[i+1] = Lw*dataw[i+1]/xyzw_abs[0,1] # make absolute
            xyzw = spd_to_xyz(np.vstack((dataw[0],dataw[i+1])), cieobs = cieobs, relative = False)
            lmsw = 683.0*np.dot(Mxyz2lms,xyzw.T).T/_CMF[cieobs]['K']
            lmsf = (Yb/100.0)*lmsw # calculate adaptation field and convert to l,m,s
            if (direction == 'forward'):
                if relative == True:
                    data[i,1:,:] = Lw*data[i,1:,:]/xyzw_abs[0,1] # make absolute
                xyzt = spd_to_xyz(data[i], cieobs = cieobs, relative = False)/_CMF[cieobs]['K'] 
                lmst = 683.0*np.dot(Mxyz2lms,xyzt.T).T # convert to l,m,s
            else:
                lmst = lmsf # put lmsf in lmst for inverse-mode

        elif (inputtype == 'xyz'):
            if relative == True: 
                dataw[i] = Lw*dataw[i]/100.0 # make absolute
            lmsw = 683.0* np.dot(Mxyz2lms, dataw[i].T).T /_CMF[cieobs]['K']  # convert to lms
            lmsf = (Yb/100.0)*lmsw
            if (direction == 'forward'):
                if relative == True:
                    data[i] = Lw*data[i]/100.0 # make absolute
                lmst = 683.0* np.dot(Mxyz2lms, data[i].T).T /_CMF[cieobs]['K'] # convert to lms
            else:
                 lmst = lmsf # put lmsf in lmst for inverse-mode

        # stage 2: calculate cone outputs of stimulus lmstp
        lmstp = math.erf(Cc*(np.log(lmst/lms0) + Cf*np.log(lmsf/lms0)))
        lmsfp = math.erf(Cc*(np.log(lmsf/lms0) + Cf*np.log(lmsf/lms0)))
        lmstp = np.vstack((lmsfp,lmstp)) # add adaptation field lms temporarily to lmsp for quick calculation
        
        
        # stage 3: calculate optic nerve signals, lam*, alphp, betp:
        lstar,alph, bet = asplit(np.dot(MAab, lmstp.T).T)

        alphp = cga1[0]*alph
        alphp[alph<0] = cga1[1]*alph[alph<0]
        betp = cgb1[0]*bet
        betp[bet<0] = cgb1[1]*bet[bet<0]
        
        # stage 4: calculate recoded nerve signals, alphapp, betapp:
        alphpp = cga2[0]*(alphp + betp)
        betpp = cgb2[0]*(alphp - betp)

        # stage 5: calculate conscious color perception:
        lstar_int = cl_int[0]*(lstar + cl_int[1])
        alph_int = cab_int[0]*(np.cos(cab_int[1]*np.pi/180.0)*alphpp - np.sin(cab_int[1]*np.pi/180.0)*betpp)
        bet_int = cab_int[0]*(np.sin(cab_int[1]*np.pi/180.0)*alphpp + np.cos(cab_int[1]*np.pi/180.0)*betpp)
        lstar_out = lstar_int
        
        if direction == 'forward':
            if Ccwb is None:
                alph_out = alph_int - cab_out[0]
                bet_out = bet_int -  cab_out[1]
            else:
                Ccwb = Ccwb*np.ones((2))
                Ccwb[Ccwb<0.0] = 0.0
                Ccwb[Ccwb>1.0] = 1.0
                alph_out = alph_int - Ccwb[0]*alph_int[0] # white balance shift using adaptation gray background (Yb=20%), with Ccw: degree of adaptation
                bet_out = bet_int -  Ccwb[1]*bet_int[0]
  
            camout[i] = np.vstack((lstar_out[1:],alph_out[1:],bet_out[1:])).T # stack together and remove adaptation field from vertical stack
        elif direction == 'inverse':
            labf_int = np.hstack((lstar_int[0],alph_int[0],bet_int[0]))
            
            # get lstar_out, alph_out & bet_out for data:
            lstar_out, alph_out, bet_out = asplit(data[i])
        
            # stage 5 inverse: 
            # undo cortical white-balance:
            if Ccwb is None:
                alph_int = alph_out + cab_out[0]
                bet_int = bet_out +  cab_out[1]
            else:
                Ccwb = Ccwb*np.ones((2))
                Ccwb[Ccwb<0.0] = 0.0
                Ccwb[Ccwb>1.0] = 1.0
                alph_int = alph_out + Ccwb[0]*alph_int[0] #  inverse white balance shift using adaptation gray background (Yb=20%), with Ccw: degree of adaptation
                bet_int = bet_out +  Ccwb[1]*bet_int[0]

            lstar_int = lstar_out
            alphpp = (1.0 / cab_int[0]) * (np.cos(-cab_int[1]*np.pi/180.0)*alph_int - np.sin(-cab_int[1]*np.pi/180.0)*bet_int)
            betpp = (1.0 / cab_int[0]) * (np.sin(-cab_int[1]*np.pi/180.0)*alph_int + np.cos(-cab_int[1]*np.pi/180.0)*bet_int)
            lstar_int = lstar_out
            lstar = (lstar_int /cl_int[0]) - cl_int[1] 
            
            # stage 4 inverse:
            alphp = 0.5*(alphpp/cga2[0] + betpp/cgb2[0])  # <-- alphpp = (Cga2.*(alphp+betp));
            betp = 0.5*(alphpp/cga2[0] - betpp/cgb2[0]) # <-- betpp = (Cgb2.*(alphp-betp));

            # stage 3 invers:
            alph = alphp/cga1[0]
            bet = betp/cgb1[0]
            sa = np.sign(cga1[1])
            sb = np.sign(cgb1[1])
            alph[(sa*alphp)<0.0] = alphp[(sa*alphp)<0] / cga1[1] 
            bet[(sb*betp)<0.0] = betp[(sb*betp)<0] / cgb1[1] 
            lab = ajoin((lstar, alph, bet))
            
            # stage 2 inverse:
            lmstp = np.dot(invMAab,lab.T).T 
            lmstp[lmstp<-1.0] = -1.0
            lmstp[lmstp>1.0] = 1.0

            lmstp = math.erfinv(lmstp) / Cc - Cf*np.log(lmsf/lms0)
            lmst = np.exp(lmstp) * lms0
            
            # stage 1 inverse:
            xyzt =  np.dot(invMxyz2lms,lmst.T).T   
            
            if relative == True:
                xyzt = (100.0/Lw) * xyzt
            
            camout[i] = xyzt
    
#    if flipaxis0and1 == True: # loop over shortest dim.
#        camout = np.transpose(camout, axes = (1,0,2))
    
    # Flip light source dim back to axis 1:
    camout = np.transpose(camout, axes = (1,0,2))

    if camout.shape[0] == 1:
        camout = np.squeeze(camout,axis = 0)
        
    return camout