def process_all_blocks(self, wsapi_data, time_to_wait, send_email_after):
r = requests.get(XML_URL, headers={'Cache-Control': 'no-cache'})
# Process the r.text to find the errant, non-ASCII characters
safe_text = unicodedata.normalize('NFKD', r.text).encode('ascii', 'ignore')
block_xml = ET.fromstring(safe_text)
paths_to_ignore = ["_shared-content/program-blocks/undergrad"]
blocks = []
for block in block_xml.findall('.//system-block'):
if any([path in block.find('path').text for path in paths_to_ignore]):
continue
block_id = block.get('id')
result = self.process_block(wsapi_data, block_id)
blocks.append(result)
time.sleep(time_to_wait)
if send_email_after:
missing_data_codes = self.missing_data_codes
caps_gs_sem_email_content = render_template("caps_gs_sem_recipients_email.html", **locals())
if len(missing_data_codes) > 0:
send_message("No CAPS/GS Banner Data Found", caps_gs_sem_email_content, html=True, caps_gs_sem=True)
unused_banner_codes = self.get_unused_banner_codes(wsapi_data)
caps_gs_sem_recipients = app.config['CAPS_GS_SEM_RECIPIENTS']
admin_email_content = render_template("admin_email.html", **locals())
send_message("Readers Digest: Program Sync", admin_email_content, html=True)
# reset the codes found
self.codes_found_in_cascade = []
return "Finished sync of all CAPS/GS/SEM programs."
def send_email(subject, text):
print("sending email")
credentials = auth.get_credentials()
gmail_service = auth.get_gmail_service(credentials)
message = mail.create_message("*****@*****.**", subject, text)
mail.send_message(gmail_service, message)
def contact():
if request.method == 'POST':
name = request.form.get('name')
email = request.form.get('email')
message = request.form.get('message')
email_kwargs = {'name': name, 'email': email, 'message': message}
# print(email_kwargs)
formatted_email = email_template.substitute(**email_kwargs)
# print('\n\n')
# print(formatted_email)
send_message(formatted_email)
return redirect('/')
def api_system():
"""The website API, used for posting and getting comments."""
data = request.form
fields = (data['first_name'], data['last_name'], data['email_address'],
data['comment'])
cursor.execute(
'INSERT INTO comments(first_name, last_name, email_address, comment) '
'VALUES(?, ?, ?, ?)', fields)
db.commit()
send_message(
data['email_address'], 'We have recieved your comment:\n'
'"{0}"\nThanks for giving us feedback!'.format(data['comment']))
return jsonify({'status': 'Comment added successfully!'})
def process_all_blocks(self, time_to_wait, send_email_after):
new_banner_data = self.get_new_banner_data()
if len(new_banner_data) == 0:
return 'Received no data from banner; skipping all blocks'
r = requests.get(XML_URL, headers={'Cache-Control': 'no-cache'})
# Process the r.text to find the errant, non-ASCII characters
safe_text = unicodedata.normalize('NFKD', r.text).encode('ascii', 'ignore')
block_xml = ET.fromstring(safe_text)
paths_to_ignore = ['_shared-content/program-blocks/undergrad']
blocks = []
for block in block_xml.findall('.//system-block'):
if any([path in block.find('path').text for path in paths_to_ignore]):
continue
block_id = block.get('id')
# gather codes that are in cascade
concentration_code = block.find('.//concentration_code').text
if concentration_code not in self.codes_found_in_cascade:
self.codes_found_in_cascade.append(concentration_code)
result = self.process_block(new_banner_data, block_id, time_to_wait)
blocks.append(result)
if send_email_after:
codes_not_found_in_banner = self.codes_not_found_in_banner
caps_gs_sem_email_content = render_template('caps_gs_sem_recipients_email.html', **locals())
if len(codes_not_found_in_banner) > 0:
send_message('No CAPS/GS Banner Data Found', caps_gs_sem_email_content, html=True, caps_gs_sem=True)
unused_banner_codes = self.get_unused_banner_codes(new_banner_data)
caps_gs_sem_recipients = app.config['CAPS_GS_SEM_RECIPIENTS']
admin_email_content = render_template('admin_email.html', **locals())
if codes_not_found_in_banner or unused_banner_codes:
send_message('Readers Digest: Program Sync', admin_email_content, html=True)
# reset the codes found
self.codes_found_in_cascade = []
self.codes_not_found_in_banner = []
# publish program feeds
self.cascade.publish(app.config['PUBLISHSET_ID'], 'publishset')
return 'Finished sync of all CAPS/GS/SEM programs.'
def send():
if not is_admin():
return "Not Authorized", 401
args = request.json
print(args)
recipients = args.get("recipients") or ""
subject = args.get("subject") or ""
html = args.get("html") or ""
text = args.get("text") or ""
to = []
if(recipients == "org"):
to = ["*****@*****.**"]
elif(recipients == "admin"):
to = ["*****@*****.**"]
elif(recipients == "all"):
to = [x["email"] for x in admin(True)]
elif(recipients == "wpi"):
to = [ x["email"] for x in admin(True) if "wpi.edu" in x["email"] or \
(x["school"] and ("WPI" in x["school"]["name"] or "Worcester Polytechnic" in x["school"]["name"])) ]
# return str(to)
send_message(to, subject, html, text)
return "Message sent successfully to {0} recipients".format(len(to))
def emailHandle():
req_data = request.get_json()
case = req_data["case"]
bot_response = "Custom Response"
EMAIL_FROM = '*****@*****.**' # [email protected]
EMAIL_SUBJECT = "Email from chat bot"
EMAIL_CONTENT = ""
email_to = {
2.1: "*****@*****.**",
2.2: "*****@*****.**",
3.3: "*****@*****.**"
}
# name, roll, mail
user_info = "Name - " + req_data[
"name"] + ", Enrollment number - " + req_data[
"roll"] + ", E-mail ID - " + req_data["mail"] + ", "
if case == 2.1:
EMAIL_CONTENT = "Degree Query for course: " + req_data[
"course"] + ". Batch: " + req_data[
"batch"] + ". Drop out case: " + req_data["drop"]
elif case == 2.2:
EMAIL_CONTENT = "Bonafide for purpose: " + req_data["purpose"]
elif case == 3.3:
EMAIL_CONTENT = "Accounts Query for security for batch: " + req_data[
"batch"] + ". Year: " + req_data["year"]
EMAIL_CONTENT = user_info + EMAIL_CONTENT
service = mail.service_account_login()
message = mail.create_message(EMAIL_FROM, email_to.get(case),
EMAIL_SUBJECT, EMAIL_CONTENT)
sent = mail.send_message(service, 'me', message)
bot_response = "Email sent successfully."
return jsonify({
"method": "POST",
"headers": {
"content-type": "application/json"
},
"body": {
"response": bot_response
}
})
# loop over the facial embeddings
for encoding in encodings:
playsound("anythere.wav")
servo.turnRight()
# attempt to match each face in the input image to our known
# encodings
matches = face_recognition.compare_faces(data["encodings"], encoding)
name = "Unknown" #if face is not recognized, then print Unknown
if (name == "Unknown"):
playsound("pew.wav")
playsound("pew.wav")
playsound("pew.wav")
servo.shoot()
playsound("lost.wav")
request = message.send_message()
print('Status Code: ' + format(request.status_code)
) #200 status code means email sent successfully
# check to see if we have found a match
if True in matches:
# find the indexes of all matched faces then initialize a
# dictionary to count the total number of times each face
# was matched
matchedIdxs = [i for (i, b) in enumerate(matches) if b]
counts = {}
# loop over the matched indexes and maintain a count for
# each recognized face face
for i in matchedIdxs:
name = data["names"][i]
#If the contour isn't large enough
if cv2.contourArea(c) < MIN_AREA:
continue
if not motion_detected and time_detected is None:
print "Motion Detected!"
#Create an image and send it
cv2.imwrite(
datetime.datetime.now().strftime("%A %d %B %Y %I:%M:%S%p") +
".jpg", frame)
mes = create_message(
EMAIL, EMAIL, 'Motion Detected!',
"Motion has been detected by your security webcam!",
datetime.datetime.now().strftime("%A %d %B %Y %I:%M:%S%p") +
".jpg")
send_message(service, "me", mes)
#Flag motion_detection as true and begin video recording
motion_detected = True
time_detected = datetime.datetime.now()
fname = datetime.datetime.now().strftime(
"%A %d %B %Y %I:%M:%S%p") + '_WebCurity.avi'
out = cv2.VideoWriter(fname, fourcc, 20.0, (RES_X, RES_Y))
#Surround the contour with a rectangle!
(x, y, w, h) = cv2.boundingRect(c)
cv2.rectangle(frame, (x, y), (x + w, y + h), (0, 0, 255), 2)
#Write time and date
cv2.putText(frame,
datetime.datetime.now().strftime("%A %d %B %Y %I:%M:%S%p"),
(10, frame.shape[0] - 10), cv2.FONT_HERSHEY_SIMPLEX, 0.35,
def run_seizure_detection(build_target):
"""
The main entry point for running seizure-detection cross-validation and predictions.
Directories from settings file are configured, classifiers are chosen, pipelines are
chosen, and the chosen build_target ('cv', 'predict', 'train_model') is run across
all combinations of (targets, pipelines, classifiers)
"""
with open('SETTINGS.json') as f:
settings = json.load(f)
data_dir = str(settings['competition-data-dir'])
cache_dir = str(settings['data-cache-dir'])
submission_dir = str(settings['submission-dir'])
makedirs(submission_dir)
cached_data_loader = CachedDataLoader(cache_dir)
ts = time.get_millis()
targets = [
'Dog_1',
'Dog_2',
'Dog_3',
'Dog_4',
'Dog_5',
'Patient_1_downsample',
'Patient_2_downsample',
]
pipelines = [
# NOTE(mike): you can enable multiple pipelines to run them all and compare results
# Pipeline(pipeline=[FFT(), Slice(1, 64), Magnitude(), Log10()]),
# Pipeline(pipeline=[FFT(), Slice(1, 48), Magnitude(), Log10()]),
# Pipeline(pipeline=[FFT(), Slice(1, 96), Magnitude(), Log10()]),
# Pipeline(pipeline=[RFFT(), Slice(1, 48), Magnitude(), Log10()]),
# Pipeline(pipeline=[FFT(), Slice(1, 128), Magnitude(), Log10()]),
Pipeline(pipeline=[TimeAliasing(),FFT(), Slice(1, 48), Magnitude(), Log10()]),
# Pipeline(pipeline=[TimeAliasing(),FFT(), Slice(1, 64), Magnitude(), Log10()]),
# Pipeline(pipeline=[FFT(), Slice(1, 160), Magnitude(), Log10()]),
# Pipeline(pipeline=[FFT(), Magnitude(), Log10()]),
# Pipeline(pipeline=[Stats()]),
# Pipeline(pipeline=[DaubWaveletStats(4)]),
# Pipeline(pipeline=[Resample(400), DaubWaveletStats(4)]),
# Pipeline(pipeline=[Resample(400), MFCC()]),
# Pipeline(pipeline=[TimeAliasing(),FFTWithTimeFreqCorrelation(1, 48, 400, 'us')]),
# Pipeline(pipeline=[FFTWithTimeFreqCorrelation(1, 48, 400, 'us')]),
# Pipeline(pipeline=[TimeAliasing(),FFTWithTimeFreqCorrelation(1, 48, 400, 'none')]), # winning submission
# Pipeline(pipeline=[FFTWithTimeFreqCorrelation(1, 48, 400, 'usf')]), # higher score than winning submission
# Pipeline(pipeline=[FFTWithTimeFreqCorrelation(1, 48, 400, 'none')]),
# Pipeline(pipeline=[FFTWithTimeFreqCorrelation(1, 48, 400, 'none')]),
# Pipeline(pipeline=[TimeAliasing(),TimeCorrelation(400, 'usf', with_corr=True, with_eigen=True)]),
# Pipeline(pipeline=[TimeAliasing(),TimeCorrelation(400, 'us', with_corr=True, with_eigen=True)]),
# Pipeline(pipeline=[TimeCorrelation(400, 'us', with_corr=True, with_eigen=False)]),
# Pipeline(pipeline=[TimeCorrelation(400, 'us', with_corr=False, with_eigen=True)]),
# Pipeline(pipeline=[TimeCorrelation(400, 'none', with_corr=True, with_eigen=True)]),
# Pipeline(pipeline=[TimeAliasing(),FreqCorrelation(1, 48, 'usf', with_corr=True, with_eigen=True,with_fft = True)]),
# Pipeline(pipeline=[FreqCorrelation(1, 48, 'us', with_corr=True, with_eigen=True)]),
# Pipeline(pipeline=[FreqCorrelation(1, 48, 'us', with_corr=True, with_eigen=False)]),
# Pipeline(pipeline=[FreqCorrelation(1, 48, 'us', with_corr=False, with_eigen=True)]),
# Pipeline(pipeline=[FreqCorrelation(1, 48, 'none', with_corr=True, with_eigen=True)]),
# Pipeline(pipeline=[TimeFreqCorrelation(1, 48, 400, 'us')]),
# Pipeline(pipeline=[TimeFreqCorrelation(1, 48, 400, 'usf')]),
# Pipeline(pipeline=[TimeFreqCorrelation(1, 48, 400, 'none')]),
]
classifiers = [
# NOTE(mike): you can enable multiple classifiers to run them all and compare results
(RandomForestClassifier(n_estimators=3, min_samples_split=1, bootstrap=False, n_jobs=4, random_state=0), 'rf3mss1Bfrs0'),
# (RandomForestClassifier(n_estimators=150, min_samples_split=1, bootstrap=False, n_jobs=4, random_state=0), 'rf150mss1Bfrs0'),
# (RandomForestClassifier(n_estimators=300, min_samples_split=1, bootstrap=False, n_jobs=4, random_state=0), 'rf300mss1Bfrs0'),
# (RandomForestClassifier(n_estimators=3000, min_samples_split=1, bootstrap=False, n_jobs=4, random_state=0), 'rf3000mss1Bfrs0'),
# (GaussianNB(),'gbn'),
# (BernoulliRBM(n_components=100),'dbn'),
# (SVC(probability = True),'svc100'),
# (LDA(),'lda'),
]
cv_ratio = 0.5
def should_normalize(classifier):
clazzes = [LogisticRegression]
return np.any(np.array([isinstance(classifier, clazz) for clazz in clazzes]) == True)
def train_full_model(make_predictions):
for pipeline in pipelines:
for (classifier, classifier_name) in classifiers:
print 'Using pipeline %s with classifier %s' % (pipeline.get_name(), classifier_name)
guesses = ['clip,preictal']
classifier_filenames = []
for target in targets:
task_core = TaskCore(cached_data_loader=cached_data_loader, data_dir=data_dir,
target=target, pipeline=pipeline,
classifier_name=classifier_name, classifier=classifier,
normalize=should_normalize(classifier), gen_ictal=False,
cv_ratio=cv_ratio)
if make_predictions:
predictions = MakePredictionsTask(task_core).run()
guesses.append(predictions.data)
else:
task = TrainClassifierTask(task_core)
print "training"
task.run()
print "train_finished"
classifier_filenames.append(task.filename())
if make_predictions:
filename = 'submission%d-%s_%s.csv' % (ts, classifier_name, pipeline.get_name())
filename = os.path.join(submission_dir, filename)
with open(filename, 'w') as f:
print >> f, '\n'.join(guesses)
print 'wrote', filename
else:
print 'Trained classifiers ready in %s' % cache_dir
for filename in classifier_filenames:
print os.path.join(cache_dir, filename + '.pickle')
def train_model_with_calib(make_predictions):
for pipeline in pipelines:
for (classifier, classifier_name) in classifiers:
print 'Using pipeline %s with classifier %s' % (pipeline.get_name(), classifier_name)
guesses = ['clip,preictal']
classifier_filenames = []
for target in targets:
task_core = TaskCore(cached_data_loader=cached_data_loader, data_dir=data_dir,
target=target, pipeline=pipeline,
classifier_name=classifier_name, classifier=classifier,
normalize=should_normalize(classifier), gen_ictal=False,
cv_ratio=cv_ratio)
if make_predictions:
predictions = MakePredictionswithCalibTask(task_core).run()
guesses.append(predictions.data)
else:
task = TrainClassifierwithCalibTask(task_core)
print "training"
task.run()
print "train_finished"
classifier_filenames.append(task.filename())
if make_predictions:
filename = 'submission%d-%s_%s.csv' % (ts, classifier_name, pipeline.get_name())
filename = os.path.join(submission_dir, filename)
with open(filename, 'w') as f:
print >> f, '\n'.join(guesses)
print 'wrote', filename
else:
print 'Trained classifiers ready in %s' % cache_dir
for filename in classifier_filenames:
print os.path.join(cache_dir, filename + '.pickle')
def do_cross_validation_full():
summaries = []
print "ok"
for pipeline in pipelines:
for (classifier, classifier_name) in classifiers:
print 'Using pipeline %s with classifier %s' % (pipeline.get_name(), classifier_name)
scores = []
S_scores = []
E_scores = []
y_cv = []
pred = []
for target in targets:
print 'Processing %s (classifier %s)' % (target, classifier_name)
task_core = TaskCore(cached_data_loader=cached_data_loader, data_dir=data_dir,
target=target, pipeline=pipeline,
classifier_name=classifier_name, classifier=classifier,
normalize=should_normalize(classifier), gen_ictal=False,
cv_ratio=cv_ratio)
data = CrossValidationScoreFullTask(task_core).run()
y_cv = np.concatenate((y_cv,data.y_cv),axis = -1);
pred = np.concatenate((pred,data.pred),axis = -1);
print y_cv
print pred
fpr,tpr,thresholds = metrics.roc_curve(y_cv,pred,pos_label = 1)
print 'AUC'
print metrics.auc(fpr,tpr)
def do_cross_validation():
summaries = []
for pipeline in pipelines:
for (classifier, classifier_name) in classifiers:
print 'Using pipeline %s with classifier %s' % (pipeline.get_name(), classifier_name)
scores = []
S_scores = []
E_scores = []
for target in targets:
print 'Processing %s (classifier %s)' % (target, classifier_name)
task_core = TaskCore(cached_data_loader=cached_data_loader, data_dir=data_dir,
target=target, pipeline=pipeline,
classifier_name=classifier_name, classifier=classifier,
normalize=should_normalize(classifier), gen_ictal=False,
cv_ratio=cv_ratio)
data = CrossValidationScoreTask(task_core).run()
score = data.score
scores.append(score)
print '%.3f' % score, 'S=%.4f' % data.S_auc
S_scores.append(data.S_auc)
if len(scores) > 0:
name = pipeline.get_name() + '_' + classifier_name
summary = get_score_summary(name, scores)
summaries.append((summary, np.mean(scores)))
print summary
if len(S_scores) > 0:
name = pipeline.get_name() + '_' + classifier_name
summary = get_score_summary(name, S_scores)
print 'S', summary
print_results(summaries)
if build_target == 'cv':
do_cross_validation()
elif build_target == 'train_model':
train_full_model(make_predictions=False)
elif build_target == 'make_predictions':
train_full_model(make_predictions=True)
elif build_target == 'make_predictions_with_calib':
train_model_with_calib(make_predictions = True)
elif build_target == 'cv_full':
do_cross_validation_full()
else:
raise Exception("unknown build target %s" % build_target)
send_message('your program finished running on mercury')
def send_email(*args, **kwds):
mail.send_message(*args, **kwds)
def delete_all():
m.send_message(text.get(0.0, END), self.login, self.password, to.get(0.0, END), subject.get(0.0, END))
widgets = self.parent.grid_slaves()
for widget in widgets:
widget.destroy()
self.toolbar()
def update_git_bom(bom):
for fname in os.listdir(path+'/'+bom):
r = requests.get('https://raw.githubusercontent.com/hammonja/prod_data/master/BOMS/'+bom+'/'+fname , verify=False)
with open(path+'/'+bom+'/'+fname, 'w') as out:
out.write(r.text)
return
# get current boms from sage
sage_boms = get_sage_boms()
# get all boms from git
git_boms = get_git_boms()
# check if there is a mis-match
if sage_boms <> git_boms:
# update boms from git that are not equal
for bom in get_unequal_boms():
update_git_bom(bom)
# get all boms from git again
git_boms = get_git_boms()
# check again
if sage_boms <> git_boms:
# still unequal then send an email
for bom in get_unequal_boms():
text = "The following BOM is out of sync with github : "
send_message(text,bom)
