def main():
gorgonVersion = '@Gorgon_VERSION@'
app = QtGui.QApplication(sys.argv)
#setting different font sizes for different OSs
if (sys.platform == 'win32'):
pass
elif (sys.platform == 'darwin'):
app.setStyleSheet("* { font-size: 10px }")
else:
app.setStyleSheet("* { font-size: 10px }")
pixmap = QtGui.QPixmap(pathname + "/splash.png")
splash = QtGui.QSplashScreen(pixmap, QtCore.Qt.WindowStaysOnTopHint)
splash.setMask(pixmap.mask())
splash.show()
app.processEvents()
window = MainWindowForm(gorgonVersion)
window.showNormal()
window.raise_()
# print dir(window.actions)
# print window.actions.actionList
window.windowManager.skeletonViewer.fileName = QtCore.QString(
"skeleton-vp6-b0.4.mrc")
window.windowManager.sseViewer.helixFileName = QtCore.QString(
"vp6-helices.wrl")
window.actions.getAction("perform_SSEFindHelixCorrespondences").trigger()
window.windowManager.sseViewer.helixCorrespondanceFinder.ui.lineEditSequenceFile.setText(
QtCore.QString("vp6.seq"))
# window.windowManager.sseViewer.correspondenceEngine.loadSequenceGraph()
window.windowManager.skeletonViewer.loadData()
window.windowManager.sseViewer.loadHelixData()
# self.sheetFileName = ""
# window.windowManager.sseViewer.helixCorrespondanceFinder.checkOk()
# window.windowManager.sseViewer.helixCorrespondanceFinder.accept()
window.windowManager.sseViewer.helixCorrespondanceFinder.createBasicCorrespondence(
)
window.windowManager.sseViewer.correspondenceEngine.executeQuery()
#!/usr/bin/python
import sys
from libpyGORGON import PDBAtom,Vector3DFloat
from PyQt4 import QtGui, QtCore
from window_manager import WindowManager
from main_window_form import MainWindowForm
app = QtGui.QApplication(sys.argv)
window = MainWindowForm("2.0")
window.addModule(WindowManager(window))
window.showMaximized()
cAlphaViewer=window.viewers['calpha']
rawAtom=PDBAtom('AAAA', 'A', 1, 'CA')
rawAtom.setPosition(Vector3DFloat(-1, 0, 0))
rawAtom = cAlphaViewer.renderer.addAtom(rawAtom)
a = PDBAtom('AAAA', 'A', 2, 'CA')
a.setPosition(Vector3DFloat(1, 0, 0))
print 'a:', a
b = cAlphaViewer.renderer.addAtom(a)
print 'b-1:', b
if not cAlphaViewer.loaded:
cAlphaViewer.loaded = True
cAlphaViewer.emitModelLoaded()
del a #This line causes a segmentation fault later on, which is weird because we never use the atom at this location in memory after this
#Thus, unless there's a change, I'll have to be extremely careful about Python's garbage collection
rawAtom.setColor(1, 0, 0, 1) #Red