def query_api(request, review_name_slug):
slugged_review = Review.objects.get(slug=review_name_slug)
query_parts = slugged_review.query_set.all()
query = "("
for part in query_parts:
query += part.query_string + ") AND ("
query = query[:-6]
esearch_result = pubmed.esearch_query(query)
efetch_result = pubmed.efetch_query(esearch_result)
elink_result = pubmed.elink_query(efetch_result)
slugged_review.pool_size = len(esearch_result)
slugged_review.save()
for id in elink_result:
result = elink_result[id]
authors = ""
for author in result["authors"]:
authors += author + ", "
authors = authors[:-2]
paper = Paper.objects.create(review=slugged_review,
title=result["title"],
authors=authors,
abstract=result["abstract"],
publish_date=result["publish_date"],
paper_url=result["paper_url"])
return HttpResponse()
def check_total_results(request, review_name_slug):
slugged_review = Review.objects.get(slug=review_name_slug)
query_parts = slugged_review.query_set.all()
query = "("
for part in query_parts:
query += part.query_string + ") AND ("
query = query[:-6]
esearch_result = pubmed.esearch_query(query)
return HttpResponse(len(esearch_result))
def check_total_results(request,review_name_slug):
slugged_review = Review.objects.get(slug=review_name_slug)
query_parts = slugged_review.query_set.all()
query = "("
for part in query_parts:
query += part.query_string + ") AND ("
query=query[:-6]
esearch_result = pubmed.esearch_query(query)
return HttpResponse(len(esearch_result))
def save_query_std(request, review_name_slug, query_string):
review = Review.objects.get(slug=review_name_slug)
formatted = format_query_novice(query_string)
esearch_result = pubmed.esearch_query(formatted)
id_string = ""
for id in esearch_result:
id_string += id + ","
id_string = id_string[:-1]
query_object = Query.objects.create(review=review,query_string=formatted,pool_size=len(esearch_result),results=id_string)
return HttpResponse()
def save_query_std(request, review_name_slug, query_string):
review = Review.objects.get(slug=review_name_slug)
formatted = format_query_novice(query_string)
esearch_result = pubmed.esearch_query(formatted)
id_string = ""
for id in esearch_result:
id_string += id + ","
id_string = id_string[:-1]
query_object = Query.objects.create(review=review,
query_string=formatted,
pool_size=len(esearch_result),
results=id_string)
return HttpResponse()
def query_api(request,review_name_slug):
slugged_review = Review.objects.get(slug=review_name_slug)
query_parts = slugged_review.query_set.all()
query = "("
for part in query_parts:
query += part.query_string + ") AND ("
query=query[:-6]
esearch_result = pubmed.esearch_query(query)
efetch_result = pubmed.efetch_query(esearch_result)
elink_result = pubmed.elink_query(efetch_result)
slugged_review.pool_size= len(esearch_result)
slugged_review.save()
for id in elink_result:
result = elink_result[id]
authors = ""
for author in result["authors"]:
authors += author + ", "
authors=authors[:-2]
paper = Paper.objects.create(review=slugged_review,title=result["title"],authors=authors,abstract=result["abstract"],publish_date=result["publish_date"],paper_url=result["paper_url"])
return HttpResponse()
def check_API_std(request, review_name_slug, query_string):
# get list of ID results from the PubMed API
formatted = format_query_novice(query_string)
id_list = pubmed.esearch_query(formatted)
return HttpResponse(len(id_list))
def check_API_std(request,review_name_slug,query_string):
# get list of ID results from the PubMed API
formatted = format_query_novice(query_string)
id_list = pubmed.esearch_query(formatted)
return HttpResponse(len(id_list))
