def mme_details(request):
submissions = MatchmakerSubmission.objects.filter(
deleted_date__isnull=True)
hpo_terms_by_id, genes_by_id, gene_symbols_to_ids = get_mme_genes_phenotypes_for_submissions(
submissions)
submission_json = get_json_for_matchmaker_submissions(
submissions, additional_model_fields=['label'], all_parent_guids=True)
submissions_by_guid = {s['submissionGuid']: s for s in submission_json}
for submission in submissions:
gene_variants = parse_mme_gene_variants(submission.genomic_features,
gene_symbols_to_ids)
submissions_by_guid[submission.guid].update({
'phenotypes':
parse_mme_features(submission.features, hpo_terms_by_id),
'geneVariants':
gene_variants,
'geneSymbols':
','.join({
genes_by_id.get(gv['geneId'], {}).get('geneSymbol')
for gv in gene_variants
})
})
return create_json_response({
'metrics': get_mme_metrics(),
'submissions': submissions_by_guid.values(),
'genesById': genes_by_id,
})
def mme_metrics_proxy(request, originating_node_name):
"""
-Proxies public metrics endpoint
Returns:
Metric JSON from matchbox
"""
logger.info('Received MME metrics request from {}'.format(originating_node_name))
return create_json_response({'metrics': get_mme_metrics()})