def run(self):
""" Create original line, movable line, background "line" (just points),
and fitted curve lines. Create figure and subplot, register the callbacks,
and show the plot.
The movable line and the curve lines are in the regions.
"""
rcParams["keymap.quit"] = ["ctrl+w", "cmd+w"] # Changes matplotlib's default quit keys
self._process_args()
self._io_manager = io.Manager(self._args)
# Read the data sets outside of Regions so we can discover the x, y
# range of the data to use for the initial GUI size:
self._input_data_sets = self._io_manager.get_movable_data_sets()
self._background_data_sets = self._io_manager.get_background_data_sets()
self._setup_GUI()
self._regions = regions.Regions(
ax=self._ax,
args=self._args,
input_data_sets=self._input_data_sets,
xy_limits=self._xy_limits,
io_manager=self._io_manager)
self._register_callbacks()
# Create rectangle selector for selecting multiple points
self._selector = widgets.RectangleSelector(self._ax, self.line_select_callback,
drawtype='box', useblit=True,
button=[1, 3], # don't use middle button
spancoords='pixels')
self._selector.set_active(False)
# Main routine: display all figures and block until all figures have
# been closed:
pyplot.show()
def test_rectangle_resize_square_center_aspect(use_data_coordinates):
ax = get_ax()
ax.set_aspect(0.8)
def onselect(epress, erelease):
pass
tool = widgets.RectangleSelector(ax, onselect, interactive=True,
use_data_coordinates=use_data_coordinates)
# Create rectangle
click_and_drag(tool, start=(70, 65), end=(120, 115))
assert tool.extents == (70.0, 120.0, 65.0, 115.0)
tool.add_state('square')
tool.add_state('center')
if use_data_coordinates:
# resize E handle
extents = tool.extents
xdata, ydata, width = extents[1], extents[3], extents[1] - extents[0]
xdiff, ycenter = 10, extents[2] + (extents[3] - extents[2]) / 2
xdata_new, ydata_new = xdata + xdiff, ydata
ychange = width / 2 + xdiff
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert_allclose(tool.extents, [extents[0] - xdiff, xdata_new,
ycenter - ychange, ycenter + ychange])
else:
# resize E handle
extents = tool.extents
xdata, ydata = extents[1], extents[3]
xdiff = 10
xdata_new, ydata_new = xdata + xdiff, ydata
ychange = xdiff * 1 / tool._aspect_ratio_correction
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert_allclose(tool.extents, [extents[0] - xdiff, xdata_new,
46.25, 133.75])
def __init__(self, ax=None):
if ax is None:
self.ax = plt.gca()
else:
self.ax = ax
self.width = self.ax.get_xlim()[1]
self.height = self.ax.get_ylim()[1]
# create the widget for selecting the range
useblit = backend.supports_blitting()
self.selector = \
widgets.RectangleSelector(self.ax, self.select_callback,
drawtype='box',
useblit=useblit,
button=[1]) # left button
# the rectangle marking the selected area
self.selected = None
self.selected_marker = patches.Rectangle((0, -5),
0,
0,
color='y',
alpha=0.5)
self.ax.add_patch(self.selected_marker)
def __init__(self,
zoomable_backend,
viewer,
min_zoom_width=10,
min_zoom_height=10):
"""
Constructor
Parameters :
* renderer - The fractal renderer associated with the Zoom Functionality
* viewer - The PlotPlayer instance used for playback
* min_zoom_width (optional) - Minimum zoom box width
* min_zoom_height (optional) - Minimum zoom box height
"""
self._zoomable_backend = zoomable_backend
self._viewer = viewer
animation_axes = self._viewer.get_render_manager().get_animation_axes()
self._zoom_box = widgets.RectangleSelector(animation_axes,
self.select_zoom_coords,
useblit=True,
minspanx=min_zoom_width,
minspany=min_zoom_height,
button=[_LEFT_MOUSE_BUTTON],
interactive=True)
figure = viewer.get_window_manager().get_figure()
figure.canvas.mpl_connect('button_press_event',
self._handle_mouse_button_press)
figure.canvas.mpl_connect('button_release_event',
self._handle_mouse_button_release)
def recMask():
ax = plt.gca()
lines = ax.get_lines()
assert len(lines) == 1
lines = lines[0]
x,y = lines.get_data()
def on_rectangle_select(event_press, event_release):
'args the press and release events'
x1, y1 = event_press.xdata, event_press.ydata
x2, y2 = event_release.xdata, event_release.ydata
print "RECT: (%3.2f, %3.2f) --> (%3.2f, %3.2f)" % (x1, y1, x2, y2)
if x1>x2:
x1, x2 = x2, x1
if y1>y2:
y1, y2 = y2, y1
mask = (x>=x1) & (x<=x2) & (y>=y1) & (y<=y2)
return mask
rect_select = widgets.RectangleSelector(
ax, on_rectangle_select, drawtype='box', useblit=True,
button=[1,], # use left button
minspanx=5, minspany=5, spancoords='pixels',
# ignore rects that are too small
);
def test_selector_clear_method(selector):
ax = get_ax()
def onselect(*args):
pass
if selector == 'span':
tool = widgets.SpanSelector(ax, onselect, 'horizontal',
interactive=True,
ignore_event_outside=True)
else:
tool = widgets.RectangleSelector(ax, onselect, interactive=True)
click_and_drag(tool, start=(10, 10), end=(100, 120))
assert tool._selection_completed
assert tool.visible
if selector == 'span':
assert tool.extents == (10, 100)
tool.clear()
assert not tool._selection_completed
assert not tool.visible
# Do another cycle of events to make sure we can
click_and_drag(tool, start=(10, 10), end=(50, 120))
assert tool._selection_completed
assert tool.visible
if selector == 'span':
assert tool.extents == (10, 50)
def selectRectangleROI(cube: pwsdt.ICBase, displayIndex: t_.Optional[int] = None) -> np.ndarray:
"""
Allow the user to draw a rectangular ROI on an image of the acquisition.
Args:
displayIndex (int): is used to display a particular z-slice for mask drawing. If None then the mean along Z is displayed. Returns an array of vertices of the rectangle.
Returns:
np.ndarray: An array of the 4 XY vertices of the rectangle.
"""
import warnings
warnings.warn("This method has been moved to the `pwspy_gui.utility` module and will be removed in the future.",
category=DeprecationWarning)
verts = [None]
if displayIndex is None:
displayIndex = cube.data.shape[2]//2
fig, ax = plt.subplots()
ax.imshow(cube.data[:, :, displayIndex])
fig.suptitle("Close to accept ROI")
def rectSelect(mins, maxes):
verts[0] = ((mins.ydata, mins.xdata), (maxes.ydata, mins.xdata), (maxes.ydata, maxes.xdata), (mins.ydata, maxes.xdata))
r = widgets.RectangleSelector(ax, rectSelect)
fig.show()
while plt.fignum_exists(fig.number):
fig.canvas.flush_events()
return np.array(verts[0])
def run(self):
""" runs the kymograph aligner """
# show the images
self.fig = plt.figure()
self.ax = plt.gca()
plt.subplots_adjust(bottom=0.2)
# prepare image to work with
image = self.kymograph._make_image(self.kymograph.offsets)
height, width = image.shape
window = self.window_margin
self.data = np.empty((height, width + 2*window), np.double) + np.nan
self.data[:, window:width + window] = image
self.image = self.ax.imshow(self.data, interpolation='none',
aspect='auto', cmap=plt.get_cmap('gray'))
self.ax.set_title(self.title)
# internal data
self.active = True
self.result = 'cancel'
self._ax_points = None
# create the widget for selecting the range
useblit = graphics.backend_supports_blitting()
self.selector = \
widgets.RectangleSelector(self.ax, self.select_callback,
drawtype='box',
useblit=useblit,
button=[1]) # only use the left button
# the rectangle marking the selected area
self.selected = slice(0, 0)
self.selected_marker = patches.Rectangle((0, -5), self.data.shape[1], 0,
color='y', alpha=0.5)
self.ax.add_patch(self.selected_marker)
# add buttons
ax_align = plt.axes([0.5, 0.05, 0.1, 0.075])
bn_align = widgets.Button(ax_align, 'Align All')
bn_align.on_clicked(self.clicked_align)
ax_ok = plt.axes([0.7, 0.05, 0.1, 0.075])
bn_ok = widgets.Button(ax_ok, 'Save')
bn_ok.on_clicked(self.clicked_ok)
ax_cancel = plt.axes([0.81, 0.05, 0.1, 0.075])
bp_cancel = widgets.Button(ax_cancel, 'Cancel')
bp_cancel.on_clicked(self.clicked_cancel)
# initialize the interaction with the image
self.fig.canvas.mpl_connect('key_release_event', self.key_callback)
# process result
plt.show()
return self.result
def interactive_ROI(info, directory_1):
def on_key(event):
global pass_accept
if event.key == 'enter':
pass_accept = False
plt.close('all')
elif event.key == 'backspace':
pass_accept = True
plt.close('all')
def onselect(eclick, erelease):
if eclick.ydata > erelease.ydata:
eclick.ydata, erelease.ydata = erelease.ydata, eclick.ydata
if eclick.xdata > erelease.xdata:
eclick.xdata, erelease.xdata = erelease.xdata, eclick.xdata
x[:] = eclick.xdata, erelease.xdata
y[:] = erelease.ydata, erelease.ydata - erelease.xdata + eclick.xdata
print('Press Enter to save or BACKSPACE to choose again')
ax.set_xlim(min(x), max(x))
ax.set_ylim(max(y), min(y))
ax.axis('off')
ax.set_yticklabels([])
ax.set_xticklabels([])
fig.canvas.mpl_connect("key_press_event", on_key)
print('')
print('----------------------- INTERACTIVE ROI -----------------------')
while pass_accept:
fig = plt.figure()
ax = fig.add_subplot(111)
print('Highlight the area of the ROI with the crusor')
x, y = [], []
rs = widgets.RectangleSelector(ax,
onselect,
drawtype='box',
rectprops=dict(facecolor='red',
edgecolor='black',
alpha=0.2,
fill=True))
ax.axis('off')
ax.set_yticklabels([])
ax.set_xticklabels([])
plt.imshow(info)
plt.show()
zoom = info[int(np.min(y)):int(np.max(y)), int(np.min(x)):int(np.max(x))]
corner_coord = (x, y)
np.save(directory_1 + '/zoom_coord.npy',
[corner_coord[0], corner_coord[1]])
np.save(directory_1 + '/zoom.npy', zoom)
return zoom, corner_coord
def test_rect_visibility(fig_test, fig_ref):
# Check that requesting an invisible selector makes it invisible
ax_test = fig_test.subplots()
_ = fig_ref.subplots()
def onselect(verts):
pass
tool = widgets.RectangleSelector(ax_test, onselect,
props={'visible': False})
tool.extents = (0.2, 0.8, 0.3, 0.7)
def test_legend_off():
"""For ellipse, test out the key modifiers"""
(ax, legend) = create_plt_with_legend_off()
def onselect(epress, erelease):
pass
tool = widgets.RectangleSelector(ax, onselect)
do_event(tool, 'on_key_press', xdata=100, ydata=100, button=1, key='t')
do_event(tool, 'on_key_release', xdata=100, ydata=100, button=1, key='t')
assert legend.get_visible() == True
def measure_lines(self):
""" shows an interface for measuring lines """
# create the widget for selecting the range
useblit = graphics.backend_supports_blitting()
self.selector = \
widgets.RectangleSelector(self.ax, self.select_callback,
drawtype='line', lineprops=self.lineprops,
useblit=useblit, button=[1])
self.line = self.ax.plot([-1, -1], [-1, -1], **self.lineprops)[0]
plt.show()
def __init__(self, ax):
"""Base class for interactively creating plans in a 2D bounding box.
Parameters
----------
ax : matplotlib.axes.Axes
The axes to install the widget on
"""
self.ax = ax
self.widget = mwidgets.RectangleSelector(self.ax,
self._onselect,
useblit=True,
interactive=True)
self._pt1 = self._pt2 = None
def plotResModel(self, res_range=(0, 4), res_num=9):
"""
plot the resistivity model with finite element mesh on and scale is
in meters, which makes everything a lot easier to handle at the
moment.
"""
self._make_resisitivity_range(res_range[0], res_range[1], res_num)
# call plot2DmModel to draw figure and plot mesh grid
self.mesh_plot = self.plot2DModel(femesh="on", yscale="m")
# connect to a button press event for changing resistivity values in
# the plot
self.cid = self.mesh_plot.ax.figure.canvas.mpl_connect(
"button_press_event", self.get_mclick_xy
)
# connect to a key press event for changing resistivity values
self.cid_pmres = self.mesh_plot.ax.figure.canvas.mpl_connect(
"key_press_event", self.pmRes
)
# make a rectangular selector
self.rect_selector = widgets.RectangleSelector(
self.mesh_plot.ax, self.rect_onselect, drawtype="box", useblit=True
)
# make a radio boxe for changing the resistivity values easily
self.radio_res_ax = self.mesh_plot.fig.add_axes(self.radio_res_loc)
self.radio_res_labels = ["air", "sea"] + [
"{0:.4g}".format(rr) for rr in self.res_range[2:]
]
self.radio_res = widgets.RadioButtons(
self.radio_res_ax, self.radio_res_labels, active=self.res_ii
)
self.radio_res.on_clicked(self.set_res_value)
# calculate minimum block width
self.mesh_width = np.min(
[
abs(om.meshx[0, ii + 1] - xx)
for ii, xx in enumerate(self.meshx[0, 7:-7], 7)
]
)
self._caluculate_midpoints()
def test_rectange_add_remove_set():
ax = get_ax()
def onselect(epress, erelease):
pass
tool = widgets.RectangleSelector(ax, onselect=onselect, interactive=True)
# Draw rectangle
click_and_drag(tool, start=(100, 100), end=(130, 140))
assert tool.extents == (100, 130, 100, 140)
assert len(tool._state) == 0
for state in ['rotate', 'square', 'center']:
tool.add_state(state)
assert len(tool._state) == 1
tool.remove_state(state)
assert len(tool._state) == 0
def SelectRectangle(self):
fig = plt.figure()
ax = fig.add_subplot(111)
plt_image = plt.imshow(self.PILImage)
rs = widgets.RectangleSelector(ax,
self.__onselect,
drawtype='box',
rectprops=dict(facecolor='red',
edgecolor='black',
alpha=0.2,
fill=True))
plt.show(block=True)
x = [np.int(rs.corners[0][0]), np.int(rs.corners[0][2])]
y = [np.int(rs.corners[1][0]), np.int(rs.corners[1][2])]
rect = np.array([x, y])
return rs
def getTarget(self):
print("start cropping")
fig = plt.figure()
fig.canvas.set_window_title('Select crop')
ax = fig.add_subplot(111)
filename = image_list[self.count]
im = Image.open(filename)
arr = np.asarray(im)
plt_image = plt.imshow(arr)
rs = widgets.RectangleSelector(ax,
self.onselect,
drawtype='box',
rectprops=dict(facecolor='red',
edgecolor='black',
alpha=0.5,
fill=True))
plt.show()
def test_rectangle_add_state():
ax = get_ax()
def onselect(epress, erelease):
pass
tool = widgets.RectangleSelector(ax, onselect, interactive=True)
# Create rectangle
click_and_drag(tool, start=(70, 65), end=(125, 130))
with pytest.raises(ValueError):
tool.add_state('unsupported_state')
with pytest.raises(ValueError):
tool.add_state('clear')
tool.add_state('move')
tool.add_state('square')
tool.add_state('center')
def test_rectangle_selector_onselect(interactive):
# check when press and release events take place at the same position
ax = get_ax()
def onselect(vmin, vmax):
ax._got_onselect = True
tool = widgets.RectangleSelector(ax, onselect, interactive=interactive)
# move outside of axis
click_and_drag(tool, start=(100, 110), end=(150, 120))
assert tool.ax._got_onselect
assert tool.extents == (100.0, 150.0, 110.0, 120.0)
# Reset tool.ax._got_onselect
tool.ax._got_onselect = False
click_and_drag(tool, start=(10, 100), end=(10, 100))
assert tool.ax._got_onselect
def test_rectangle_resize():
ax = get_ax()
def onselect(epress, erelease):
pass
tool = widgets.RectangleSelector(ax, onselect, interactive=True)
# Create rectangle
click_and_drag(tool, start=(0, 10), end=(100, 120))
assert tool.extents == (0.0, 100.0, 10.0, 120.0)
# resize NE handle
extents = tool.extents
xdata, ydata = extents[1], extents[3]
xdata_new, ydata_new = xdata + 10, ydata + 5
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert tool.extents == (extents[0], xdata_new, extents[2], ydata_new)
# resize E handle
extents = tool.extents
xdata, ydata = extents[1], extents[2] + (extents[3] - extents[2]) / 2
xdata_new, ydata_new = xdata + 10, ydata
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert tool.extents == (extents[0], xdata_new, extents[2], extents[3])
# resize W handle
extents = tool.extents
xdata, ydata = extents[0], extents[2] + (extents[3] - extents[2]) / 2
xdata_new, ydata_new = xdata + 15, ydata
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert tool.extents == (xdata_new, extents[1], extents[2], extents[3])
# resize SW handle
extents = tool.extents
xdata, ydata = extents[0], extents[2]
xdata_new, ydata_new = xdata + 20, ydata + 25
click_and_drag(tool, start=(xdata, ydata), end=(xdata_new, ydata_new))
assert tool.extents == (xdata_new, extents[1], ydata_new, extents[3])
def test_rectangle_selector_ignore_outside(ignore_event_outside):
ax = get_ax()
def onselect(vmin, vmax):
ax._got_onselect = True
tool = widgets.RectangleSelector(ax, onselect,
ignore_event_outside=ignore_event_outside)
click_and_drag(tool, start=(100, 110), end=(150, 120))
assert tool.ax._got_onselect
assert tool.extents == (100.0, 150.0, 110.0, 120.0)
# Reset
ax._got_onselect = False
# Trigger event outside of span
click_and_drag(tool, start=(150, 150), end=(160, 160))
if ignore_event_outside:
# event have been ignored and span haven't changed.
assert not ax._got_onselect
assert tool.extents == (100.0, 150.0, 110.0, 120.0)
else:
# A new shape is created
assert ax._got_onselect
assert tool.extents == (150.0, 160.0, 150.0, 160.0)