def test_one_fragment(self):
fragments, conlab = _fragments_strings_to_fragments(["0-10"], self.top)
other = _np.arange(11, self.top.n_residues)
[
_np.testing.assert_array_equal(ii, jj)
for ii, jj in zip(fragments, [_np.arange(11), other])
]
assert not conlab
def test_other_method(self):
fragments, conlab = _fragments_strings_to_fragments(["resSeq"],
self.top)
[
_np.testing.assert_array_equal(ii, jj)
for ii, jj in zip(fragments, self.fragments_by_resSeq)
]
assert not conlab
def test_consensus(self):
fragments, conlab = _fragments_strings_to_fragments(["consensus"],
self.top)
[
_np.testing.assert_array_equal(ii, jj)
for ii, jj in zip(fragments, self.fragments_by_resSeqplus)
]
assert conlab
def test_more_than_one_fragment(self):
fragments, conlab = _fragments_strings_to_fragments(
["0-10", "11-100", "200-210"], self.top)
[
_np.testing.assert_array_equal(ii, jj) for ii, jj in zip(
fragments,
[_np.arange(11),
_np.arange(11, 101),
_np.arange(200, 211)])
]
assert not conlab
def test_fragment_outside(self):
fragments, conlab = _fragments_strings_to_fragments(
[_np.arange(10), "11-100", "200-2100"], self.top, verbose=True)
def test_verbose(self):
fragments, conlab = _fragments_strings_to_fragments(
["0-10", "11-100", "200-210"], self.top, verbose=True)