def test_11_epochcontainer_without_stimulus(self):
filler = eg.epochcontainer(chosenmodel=self.chosenmodel,
parameters=self.no_runtimeparam)
no_of_epochs = filler["epoch0soma"]["v"]["tags"][0]
a = Counter( [ int(no_of_epochs[0]),
filler["epoch0soma"]["v"]["start_time"],
filler["epoch0soma"]["v"]["stop_time"] ] ) \
== Counter( [ 1, filler["epoch0axon"]["v"]["start_time"],
self.no_runtimeparam["tstop"] ] )
#print filler # how does the epochcontainer metadata look?
self.assertEqual(a, True)
def test_8_epochcontainer_with_voltagestimulus(self):
filler = eg.epochcontainer(chosenmodel=self.chosenmodel,
parameters=self.sec_stimparameters)
#print(filler) # how does the epochcontainer metadata look?
#print(filler.keys())
#print(filler["epoch0soma"].keys())
# self.chosenmodel.regions ->
# {"soma": ["v", "i_cap"], "axon": ["v"],
# "channels": {"soma": {"hh": ["il", "el"], "pas": ["i"]}, "axon": {"pas": ["i"]}}}
compare1a = filler["epoch0soma"]["v"]["tags"][0] # number of epochs
compare1b = filler["epoch0soma"]["v"]["tags"][1] # epochID
compare1c = filler["epoch0soma"]["v"]["tags"][2].split()[-1] # recsite
compare1d = filler["epoch0soma"]["v"]["tags"][3] # all recsites
compare1e = filler["epoch0soma"]["v"]["tags"][4] # modelname
compare1f = filler["epoch0soma"]["v"]["tags"][5] # modelscale
compare1g = filler["epoch0soma"]["v"]["tags"][6].split()[
-1] # key for recsite
compare2a = filler["epoch0axon"]["v"]["tags"][0]
compare2b = filler["epoch0axon"]["v"]["tags"][1]
compare2c = filler["epoch0axon"]["v"]["tags"][2].split()[-1]
compare2d = filler["epoch1soma"]["v"]["tags"][3] # all recsites
compare2e = filler["epoch0axon"]["v"]["tags"][4]
compare2f = filler["epoch0axon"]["v"]["tags"][5]
compare2g = filler["epoch1soma"]["v"]["tags"][6].split()[-1]
#
compare1 = [
compare1a, compare1b, compare1c, compare1d, compare1e, compare1f,
compare1g
]
compare2 = [
compare2a, compare2b, compare2c, compare2d, compare2e, compare2f,
compare2g
]
a = Counter(compare1) == Counter(compare2)
#
compare3a = filler["epoch0soma"]["v"]["tags"][1] # epochID
compare3b = filler["epoch0soma"]["v"]["tags"][2].split()[
-1] # [ region, recsite ]
compare3c = filler["epoch0soma"]["v"]["tags"][3] # all recsites
compare4a = filler["epoch1soma"]["v"]["tags"][1]
compare4b = filler["epoch1soma"]["i_cap"]["tags"][2].split()[-1]
compare4c = filler["epoch0axon"]["v"]["tags"][3]
#
compare3 = [compare3a, compare3b, compare3c]
compare4 = [compare4a, compare4b, compare4c]
b = Counter(compare3) != Counter(compare4)
#
compare5a = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
0] # number of epochs
compare5b = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
1] # epochID
compare5c = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
2].split()[-1] # recsite
compare5d = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
3] # all recsites
compare5e = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
4] # modelname
compare5f = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
5] # modelscale
compare5g = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
6].split()[-1] # key for recsite
compare6a = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
0] # number of epochs
compare6b = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
1] # epochID
compare6c = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
2].split()[-1] # recsite
compare6d = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
3] # all recsites
compare6e = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
4] # modelname
compare6f = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
5] # modelscale
compare6g = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
6].split()[-1] # key for recsite
#
compare5 = [
compare5a, compare5b, compare5c, compare5d, compare5e, compare5f,
compare5g
]
compare6 = [
compare6a, compare6b, compare6c, compare6d, compare6e, compare6f,
compare6g
]
c = Counter(compare5) == Counter(compare6)
#
compare7a = filler["epoch0channels"]["soma"]["hh"]["il"]["tags"][
0] # number of epochs
compare7b = filler["epoch0channels"]["soma"]["hh"]["il"]["tags"][
1] # epochID
compare7c = filler["epoch0channels"]["soma"]["hh"]["il"]["tags"][
2].split()[-1] # recsite
compare7d = filler["epoch0channels"]["soma"]["hh"]["il"]["tags"][
3] # all recsites
compare7e = filler["epoch0channels"]["soma"]["hh"]["il"]["tags"][
6].split()[-1] # key for recsite
compare8a = filler["epoch1channels"]["axon"]["pas"]["i"]["tags"][
0] # number of epochs
compare8b = filler["epoch1channels"]["soma"]["hh"]["il"]["tags"][
1] # epochID
compare8c = filler["epoch0channels"]["axon"]["pas"]["i"]["tags"][
2].split()[-1] # recsite
compare8d = filler["epoch0channels"]["soma"]["pas"]["i"]["tags"][
3] # all recsites
compare8e = filler["epoch0channels"]["soma"]["hh"]["el"]["tags"][
6].split()[-1] # key for recsite
#
compare7 = [compare7a, compare7b, compare7c, compare7d, compare7e]
compare8 = [compare8a, compare8b, compare8c, compare8d, compare8e]
d = Counter(compare7) != Counter(compare8)
#
self.assertEqual([a, b, c, d], [True, True, True, True])