def renderExperimentSummaryDownload(form):
experiments = form.queryExperiments()
# list of data rows
experimentsForDownload = []
# add header
headerRow = []
headerRow.append("Experiment Type")
headerRow.append("Chromosome")
headerRow.append("Reference J Num")
headerRow.append("Reference Citation")
experimentsForDownload.append(headerRow)
for experiment in experiments:
row = []
row.append(experiment.expttype)
row.append(experiment.chromosome)
row.append(experiment.reference.jnumid)
row.append(experiment.reference.short_citation)
experimentsForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in experimentsForDownload)
filename = "experiment_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderExperimentSummaryDownload(form):
experiments = form.queryExperiments()
# list of data rows
experimentsForDownload = []
# add header
headerRow = []
headerRow.append("Experiment Type")
headerRow.append("Chromosome")
headerRow.append("Reference J Num")
headerRow.append("Reference Citation")
experimentsForDownload.append(headerRow)
for experiment in experiments:
row = []
row.append(experiment.expttype)
row.append(experiment.chromosome)
row.append(experiment.reference.jnumid)
row.append(experiment.reference.short_citation)
experimentsForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in experimentsForDownload)
filename = "experiment_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderReportDownload(report, results, columns):
"""
Create the download file for
results and columns
"""
# list of data rows
fileData = []
# add header
fileData.append(columns)
fileData.extend(results)
def convert(val):
if type(val) not in (str, unicode):
return str(val)
return val
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join([convert(col).replace('\n',' ').replace('\r',' ') for col in row])) for row in fileData)
filename = "report_%d_%s.txt" % (report.id, printableTimeStamp())
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderReportDownload(report, results, columns):
"""
Create the download file for
results and columns
"""
# list of data rows
fileData = []
# add header
fileData.append(columns)
fileData.extend(results)
def convert(val):
if type(val) not in (str, str):
return str(val)
return val
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(
[convert(col).replace('\n', ' ').replace('\r', ' ') for col in row]))
for row in fileData)
filename = "report_%d_%s.txt" % (report.id, printableTimeStamp())
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderSpecimenSummaryDownload(form):
# gather lists of specimens
specimens = form.querySpecimens()
# list of data rows
specimensForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Marker Symbol")
headerRow.append("Assay Type")
headerRow.append("Specimen Label")
headerRow.append("Age")
headerRow.append("Age Note")
headerRow.append("Sex")
headerRow.append("Hybridization")
headerRow.append("Fixation")
headerRow.append("Embedding")
headerRow.append("Background")
headerRow.append("Allele(s)")
headerRow.append("Specimen Note")
specimensForDownload.append(headerRow)
for specimen in specimens:
thisRow = []
thisRow.append(specimen.assay.mgiid)
thisRow.append(specimen.assay.marker.symbol)
thisRow.append(specimen.assay.assaytype)
thisRow.append(specimen.specimenlabel or '')
thisRow.append(specimen.age or '')
thisRow.append(specimen.agenote or '')
thisRow.append(specimen.sex or '')
thisRow.append(specimen.hybridization or '')
thisRow.append(specimen.fixation or '')
thisRow.append(specimen.embeddingmethod or '')
thisRow.append(specimen.genotype.geneticbackground or '')
if specimen.genotype.combination1_cache:
thisRow.append(
specimen.genotype.combination1_cache.replace(
'\n', ' ').replace('\r', '').rstrip())
else:
thisRow.append('')
thisRow.append(specimen.specimennote or '')
specimensForDownload.append(thisRow)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in specimensForDownload)
filename = "specimen_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderSpecimenSummaryDownload(form):
# gather lists of specimens
specimens = form.querySpecimens()
# list of data rows
specimensForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Marker Symbol")
headerRow.append("Assay Type")
headerRow.append("Specimen Label")
headerRow.append("Age")
headerRow.append("Age Note")
headerRow.append("Sex")
headerRow.append("Hybridization")
headerRow.append("Fixation")
headerRow.append("Embedding")
headerRow.append("Background")
headerRow.append("Allele(s)")
headerRow.append("Specimen Note")
specimensForDownload.append(headerRow)
for specimen in specimens:
thisRow = []
thisRow.append(specimen.assay.mgiid)
thisRow.append(specimen.assay.marker.symbol)
thisRow.append(specimen.assay.assaytype)
thisRow.append(specimen.specimenlabel or '')
thisRow.append(specimen.age or '')
thisRow.append(specimen.agenote or '')
thisRow.append(specimen.sex or '')
thisRow.append(specimen.hybridization or '')
thisRow.append(specimen.fixation or '')
thisRow.append(specimen.embeddingmethod or '')
thisRow.append(specimen.genotype.geneticbackground or '')
if specimen.genotype.combination1_cache:
thisRow.append(specimen.genotype.combination1_cache.replace('\n', ' ').replace('\r', '').rstrip())
else:
thisRow.append('')
thisRow.append(specimen.specimennote or '')
specimensForDownload.append(thisRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in specimensForDownload)
filename = "specimen_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderProbeSummaryDownload(form):
probes = form.queryProbes()
# list of data rows
probesForDownload = []
# add header
headerRow = []
headerRow.append("Probe ID")
headerRow.append("Name")
headerRow.append("Type")
headerRow.append("Markers")
headerRow.append("Marker IDs")
headerRow.append("Aliases")
headerRow.append("Organism")
headerRow.append("Parent ID")
headerRow.append("Parent Name")
headerRow.append("J#s")
probesForDownload.append(headerRow)
for probe in probes:
row = []
row.append(probe.mgiid_object.accid)
row.append(probe.name)
row.append(probe.segmenttype)
# marker symbols
row.append(" | ".join([m.symbol for m in probe.markers_with_putatives]))
# marker IDs
row.append(" | ".join([m.mgiid for m in probe.markers_with_putatives]))
# aliases
row.append(" | ".join([a.alias for a in probe.aliases]))
# organism
row.append(probe.source.organism)
# parent probe
if probe.derivedfrom_probe:
row.append(probe.derivedfrom_probe.mgiid)
row.append(probe.derivedfrom_probe.name)
else:
row.append("")
row.append("")
# reference J#s
row.append(" | ".join([r.jnumid for r in probe.references]))
probesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in probesForDownload)
filename = "probe_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderResultSummaryDownload(form):
# fetch all results
results = form.queryResults()
# list of data rows
resultsForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Marker Symbol")
headerRow.append("Assay Type")
headerRow.append("Age")
headerRow.append("Structure")
headerRow.append("Detected")
headerRow.append("Specimen Label")
headerRow.append("Mutant Allele")
resultsForDownload.append(headerRow)
for result in results.items:
resultRow = []
resultRow.append(result.assay.mgiid)
resultRow.append(result.marker.symbol)
resultRow.append(result.assay.assaytype)
resultRow.append(result.age)
resultRow.append("TS" + str(result._stage_key) + ": " + result.structure.term)
resultRow.append(str(result.expressed))
if result.specimen:
resultRow.append(result.specimen.specimenlabel)
else:
resultRow.append("")
if result.genotype.combination1_cache:
resultRow.append(result.genotype.combination1_cache.replace('\n', ' ').replace('\r', '').rstrip())
else:
resultRow.append("")
resultsForDownload.append(resultRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in resultsForDownload)
filename = "result_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderAlleleSummaryDownload(form):
alleles = form.queryAlleles()
# list of data rows
allelesForDownload = []
# add header
headerRow = []
headerRow.append("Symbol")
headerRow.append("MGI ID")
headerRow.append("Name")
headerRow.append("Synonyms")
headerRow.append("Transmission")
headerRow.append("AlleleStatus")
headerRow.append("Generation Type")
headerRow.append("Attributes")
headerRow.append("MP Annotations")
headerRow.append("Disease Annotations")
allelesForDownload.append(headerRow)
for allele in alleles:
alleleRow = []
alleleRow.append(allele.symbol)
alleleRow.append(allele.mgiid)
alleleRow.append(allele.name)
alleleRow.append(",".join([str(s) for s in allele.synonyms]))
alleleRow.append(allele.transmission)
alleleRow.append(allele.status)
alleleRow.append(allele.alleletype)
alleleRow.append(",".join([str(s) for s in allele.subtypes]))
alleleRow.append(allele.summary_mp_display)
alleleRow.append(",".join(allele.disease_terms))
allelesForDownload.append(alleleRow)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in allelesForDownload)
filename = "allele_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderAlleleSummaryDownload(form):
alleles = form.queryAlleles()
# list of data rows
allelesForDownload = []
# add header
headerRow = []
headerRow.append("Symbol")
headerRow.append("MGI ID")
headerRow.append("Name")
headerRow.append("Synonyms")
headerRow.append("Transmission")
headerRow.append("AlleleStatus")
headerRow.append("Generation Type")
headerRow.append("Attributes")
headerRow.append("MP Annotations")
headerRow.append("Disease Annotations")
allelesForDownload.append(headerRow)
for allele in alleles:
alleleRow = []
alleleRow.append(allele.symbol)
alleleRow.append(allele.mgiid)
alleleRow.append(allele.name)
alleleRow.append(",".join([str(s) for s in allele.synonyms]))
alleleRow.append(allele.transmission)
alleleRow.append(allele.status)
alleleRow.append(allele.alleletype)
alleleRow.append(",".join([str(s) for s in allele.subtypes]))
alleleRow.append(allele.summary_mp_display)
alleleRow.append(",".join(allele.disease_terms))
allelesForDownload.append(alleleRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in allelesForDownload)
filename = "allele_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderReferenceSummaryDownload(form):
references = reference_service.search_for_summary(form)
# list of data rows
refsForDownload = []
# add header
headerRow = []
headerRow.append("J:#")
headerRow.append("PubMed ID")
headerRow.append("RefType")
headerRow.append("Title")
headerRow.append("Authors")
headerRow.append("Journal")
headerRow.append("Year")
headerRow.append("Abstract")
refsForDownload.append(headerRow)
for ref in references:
thisRefRow = []
thisRefRow.append(ref.jnumid)
thisRefRow.append(ref.pubmedid or '')
thisRefRow.append(ref.reftype.term)
thisRefRow.append(ref.title or '')
thisRefRow.append(ref.authors or '')
thisRefRow.append(ref.journal or '')
thisRefRow.append(str(ref.year))
thisRefRow.append(ref.abstract or '')
refsForDownload.append(thisRefRow)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in refsForDownload)
filename = "reference_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderReferenceSummaryDownload(form):
references = reference_service.search_for_summary(form)
# list of data rows
refsForDownload = []
# add header
headerRow = []
headerRow.append("J:#")
headerRow.append("PubMed ID")
headerRow.append("Title")
headerRow.append("Authors")
headerRow.append("Journal")
headerRow.append("Year")
headerRow.append("Abstract")
refsForDownload.append(headerRow)
for ref in references:
thisRefRow = []
thisRefRow.append(ref.jnumid)
thisRefRow.append(ref.pubmedid or '')
thisRefRow.append(ref.title or '')
thisRefRow.append(ref.authors or '')
thisRefRow.append(ref.journal or '')
thisRefRow.append(str(ref.year))
thisRefRow.append(ref.abstract or '')
refsForDownload.append(thisRefRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in refsForDownload)
filename = "reference_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderSequenceSummaryDownload(form):
sequences = form.querySequences()
# list of data rows
sequencesForDownload = []
# add header
headerRow = []
headerRow.append("ID")
headerRow.append("Type")
headerRow.append("Length")
headerRow.append("Strain/Species")
headerRow.append("Description")
headerRow.append("Marker Symbols")
sequencesForDownload.append(headerRow)
for sequence in sequences:
row = []
row.append(" | ".join([a.accid for a in sequence.accession_objects]))
row.append(sequence.type)
row.append(str(sequence.length))
row.append(sequence.source.strain.strain)
row.append(sequence.description)
row.append(" | ".join([m.symbol for m in sequence.markers]))
sequencesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in sequencesForDownload)
filename = "sequence_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderAssaySummaryDownload(form):
assays = form.queryAssays()
# list of data rows
assaysForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Gene")
headerRow.append("Gene MGI ID")
headerRow.append("Assay Type")
headerRow.append("Reference J#")
headerRow.append("Short Citation")
assaysForDownload.append(headerRow)
for assay in assays:
assayRow = []
assayRow.append(assay.mgiid)
assayRow.append(assay.marker.symbol)
assayRow.append(assay.marker.mgiid)
assayRow.append(assay.assaytype)
assayRow.append(assay.reference.jnumid)
assayRow.append(assay.reference.short_citation)
assaysForDownload.append(assayRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in assaysForDownload)
filename = "gxd_assay_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderAssaySummaryDownload(form):
assays = form.queryAssays()
# list of data rows
assaysForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Gene")
headerRow.append("Gene MGI ID")
headerRow.append("Assay Type")
headerRow.append("Reference J#")
headerRow.append("Short Citation")
assaysForDownload.append(headerRow)
for assay in assays:
assayRow = []
assayRow.append(assay.mgiid)
assayRow.append(assay.marker.symbol)
assayRow.append(assay.marker.mgiid)
assayRow.append(assay.assaytype)
assayRow.append(assay.reference.jnumid)
assayRow.append(assay.reference.short_citation)
assaysForDownload.append(assayRow)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in assaysForDownload)
filename = "gxd_assay_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderSequenceSummaryDownload(form):
sequences = form.querySequences()
# list of data rows
sequencesForDownload = []
# add header
headerRow = []
headerRow.append("ID")
headerRow.append("Type")
headerRow.append("Length")
headerRow.append("Strain/Species")
headerRow.append("Description")
headerRow.append("Marker Symbols")
sequencesForDownload.append(headerRow)
for sequence in sequences:
row = []
row.append(" | ".join([a.accid for a in sequence.accession_objects]))
row.append(sequence.type)
row.append(str(sequence.length))
row.append(sequence.source.strain.strain)
row.append(sequence.description)
row.append(" | ".join([m.symbol for m in sequence.markers]))
sequencesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in sequencesForDownload)
filename = "sequence_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderProbeSummaryDownload(form):
probes = form.queryProbes()
# list of data rows
probesForDownload = []
# add header
headerRow = []
headerRow.append("Probe ID")
headerRow.append("Name")
headerRow.append("Type")
headerRow.append("Markers")
headerRow.append("Marker IDs")
headerRow.append("Primer Sequence 1")
headerRow.append("Primer Sequence 2")
headerRow.append("Aliases")
headerRow.append("Organism")
headerRow.append("Parent ID")
headerRow.append("Parent Name")
headerRow.append("J#s")
probesForDownload.append(headerRow)
for probe in probes:
row = []
row.append(probe.mgiid_object.accid)
row.append(probe.name)
row.append(probe.segmenttype)
# marker symbols
row.append(" | ".join([m.symbol
for m in probe.markers_with_putatives]))
# marker IDs
row.append(" | ".join([m.mgiid for m in probe.markers_with_putatives]))
# primer sequence
if str(probe.primer1sequence) != "None":
row.append(str(probe.primer1sequence))
row.append(str(probe.primer2sequence))
else:
row.append("")
row.append("")
# aliases
row.append(" | ".join([a.alias for a in probe.aliases]))
# organism
row.append(probe.source.organism)
# parent probe
if probe.derivedfrom_probe:
row.append(probe.derivedfrom_probe.mgiid)
row.append(probe.derivedfrom_probe.name)
else:
row.append("")
row.append("")
# reference J#s
row.append(" | ".join([r.jnumid for r in probe.references]))
probesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in probesForDownload)
filename = "probe_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
def renderAntibodySummaryDownload(form):
antibodies = form.queryAntibodies()
# list of data rows
antibodiesForDownload = []
# add header
headerRow = []
headerRow.append("Antibody MGIID")
headerRow.append("Name")
headerRow.append("Alias(es)")
headerRow.append("Organism")
headerRow.append("Type")
headerRow.append("Class")
headerRow.append("Notes")
headerRow.append("Antigen ID")
headerRow.append("Antigen Name")
headerRow.append("Antigen Organism")
headerRow.append("Antigen Region")
headerRow.append("Antigen Notes")
headerRow.append("Markers")
headerRow.append("Reference")
antibodiesForDownload.append(headerRow)
for antibody in antibodies:
row = []
row.append(antibody.mgiid)
row.append(antibody.antibodyname)
row.append(",".join([a.alias for a in antibody.aliases]))
row.append(antibody.organism)
row.append(antibody.antibodytype)
row.append(antibody.antibodyclass)
row.append(antibody.antibodynote or '')
if antibody.antigen:
row.append(antibody.antigen.mgiid)
row.append(antibody.antigen.antigenname)
if antibody.antigen.source:
row.append(antibody.antigen.source.organism)
else:
row.append("")
row.append(antibody.antigen.regioncovered or '')
row.append(antibody.antigen.antigennote or '')
else:
row.append('')
row.append('')
row.append('')
row.append('')
row.append('')
# use symbol for list of markers
row.append(", ".join([m.symbol for m in antibody.markers]))
row.append("%s, %s" % (antibody.reference.jnumid, antibody.reference.short_citation))
antibodiesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in antibodiesForDownload)
filename = "antibody_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderAntibodySummaryDownload(form):
antibodies = form.queryAntibodies()
# list of data rows
antibodiesForDownload = []
# add header
headerRow = []
headerRow.append("Antibody MGIID")
headerRow.append("Name")
headerRow.append("Alias(es)")
headerRow.append("Organism")
headerRow.append("Type")
headerRow.append("Class")
headerRow.append("Notes")
headerRow.append("Antigen ID")
headerRow.append("Antigen Name")
headerRow.append("Antigen Organism")
headerRow.append("Antigen Region")
headerRow.append("Antigen Notes")
headerRow.append("Markers")
headerRow.append("Reference")
antibodiesForDownload.append(headerRow)
for antibody in antibodies:
row = []
row.append(antibody.mgiid)
row.append(antibody.antibodyname)
row.append(",".join([a.alias for a in antibody.aliases]))
row.append(antibody.organism)
row.append(antibody.antibodytype)
row.append(antibody.antibodyclass)
row.append(antibody.antibodynote or '')
if antibody.antigen:
row.append(antibody.antigen.mgiid)
row.append(antibody.antigen.antigenname)
if antibody.antigen.source:
row.append(antibody.antigen.source.organism)
else:
row.append("")
row.append(antibody.antigen.regioncovered or '')
row.append(antibody.antigen.antigennote or '')
else:
row.append('')
row.append('')
row.append('')
row.append('')
row.append('')
# use symbol for list of markers
row.append(", ".join([m.symbol for m in antibody.markers]))
row.append("%s, %s" % (antibody.reference.jnumid, antibody.reference.short_citation))
antibodiesForDownload.append(row)
# create a generator for the table cells
generator = ("%s\r\n"%("\t".join(row)) for row in antibodiesForDownload)
filename = "antibody_summary_%s.txt" % printableTimeStamp()
return Response(generator,
mimetype="text/plain",
headers={"Content-Disposition":
"attachment;filename=%s" % filename})
def renderResultSummaryDownload(form):
# fetch all results
results = form.queryResults()
# list of data rows
resultsForDownload = []
# add header
headerRow = []
headerRow.append("Assay ID")
headerRow.append("Marker Symbol")
headerRow.append("Assay Type")
headerRow.append("Age")
headerRow.append("Structure")
headerRow.append("Cell Type")
headerRow.append("Detected")
headerRow.append("Strength")
headerRow.append("Specimen Label")
headerRow.append("Mutant Allele")
headerRow.append("Result Note")
resultsForDownload.append(headerRow)
for result in results.items:
resultRow = []
resultRow.append(result.assay.mgiid)
resultRow.append(result.marker.symbol)
resultRow.append(result.assay.assaytype)
resultRow.append(result.age)
resultRow.append("TS" + str(result._stage_key) + ": " +
result.structure.term)
if result._celltype_term_key:
resultRow.append(result.celltype.term)
else:
resultRow.append("")
resultRow.append(str(result.expressed))
resultRow.append(str(result.strength))
if result.specimen:
resultRow.append(str(result.specimen.specimenlabel))
else:
resultRow.append("")
if result.genotype.combination1_cache:
if result.genotype.isconditional == 1:
isconditional = " (conditional)"
else:
isconditional = ""
resultRow.append(
result.genotype.combination1_cache.replace('\n', ' ').replace(
'\r', '').rstrip() + isconditional)
else:
resultRow.append("")
resultRow.append(str(result.resultnote))
resultsForDownload.append(resultRow)
# create a generator for the table cells
generator = ("%s\r\n" % ("\t".join(row)) for row in resultsForDownload)
filename = "result_summary_%s.txt" % printableTimeStamp()
return Response(
generator,
mimetype="text/plain",
headers={"Content-Disposition": "attachment;filename=%s" % filename})
