def setUp(self):
# 2740200061fos
self._test_case_one = Person(
age=54.060233,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.HIGHSCHOOLGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestDementiaModel.initializeAfib,
initializationRepository=InitializationRepository(),
)
self._test_case_one._gcp[0] = 58.68
self._test_case_one._gcp.append(self._test_case_one._gcp[0] -
1.1078128)
# 2740201178fos
self._test_case_two = Person(
age=34.504449,
gender=NHANESGender.MALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.SOMECOLLEGE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestDementiaModel.initializeAfib,
initializationRepository=InitializationRepository(),
)
self._test_case_two._gcp[0] = 58.68
self._test_case_two._gcp.append(self._test_case_two._gcp[0] -
1.7339989)
self._test_case_one_parameteric = Person(
age=40,
gender=NHANESGender.MALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_BLACK,
sbp=120,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.LESSTHANHIGHSCHOOL,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestDementiaModel.initializeAfib,
initializationRepository=InitializationRepository(),
)
self._test_case_one_parameteric._gcp[0] = 25
# GCP slope is zero
self._test_case_one_parameteric._gcp.append(
self._test_case_one._gcp[0])
# test case 71 in rep_gdta.
self._test_case_two_parametric = Person(
age=80,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_BLACK,
sbp=120,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.COLLEGEGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestDementiaModel.initializeAfib,
initializationRepository=InitializationRepository(),
)
self._test_case_two_parametric._gcp[0] = 75
self._test_case_two_parametric._gcp.append(self._test_case_two._gcp[0])
# test case 72 in rep_gdta.
self._test_case_three_parametric = Person(
age=80,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.COLLEGEGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestDementiaModel.initializeAfib,
initializationRepository=InitializationRepository(),
)
self._test_case_three_parametric._gcp[0] = 75
self._test_case_three_parametric._gcp.append(
self._test_case_two._gcp[0])
self._population_dataframe = init_vectorized_population_dataframe([
self._test_case_one,
self._test_case_two,
])
def setUp(self):
self._test_case_one = Person(
age=65 - 0.828576318 * 10,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120 + 0.45 * 10,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100 - 1.1 * 10),
hdl=50,
totChol=127 - 3.64 * 10,
ldl=90,
trig=150,
bmi=26.6 + 15.30517532,
waist=94 + 19.3,
anyPhysicalActivity=1,
education=Education.COLLEGEGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=1,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestGCPModel.initializeAfib,
)
self._test_case_two = Person(
age=65 - 0.458555784 * 10,
gender=NHANESGender.MALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120 + 0.3 * 10,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100 + 0.732746529 * 10),
hdl=50,
totChol=127 + 1.18 * 10,
ldl=90,
trig=150,
bmi=26.6 + 0.419305619,
waist=94 - 2.5,
anyPhysicalActivity=1,
education=Education.SOMEHIGHSCHOOL,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestGCPModel.initializeAfib,
)
self._test_case_three = Person(
age=65 - 0.358692676 * 10,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_BLACK,
sbp=120 + 2.3 * 10,
dbp=80,
# guessingon the centering standard for glucose...may have to check
a1c=Person.convert_fasting_glucose_to_a1c(100 + 0.8893 * 10),
hdl=50,
totChol=127 + 4.7769 * 10,
ldl=90,
trig=150,
bmi=26.6 + 2.717159247,
waist=94 + 9,
anyPhysicalActivity=1,
education=Education.LESSTHANHIGHSCHOOL,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.NONE,
antiHypertensiveCount=1,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0,
initializeAfib=TestGCPModel.initializeAfib,
)
self._test_case_one._randomEffects["gcp"] = 0
self._test_case_two._randomEffects["gcp"] = 0
self._test_case_three._randomEffects["gcp"] = 0
def setUp(self):
self._black_female_high_cr = Person(
age=52,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_BLACK,
sbp=120,
dbp=80,
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.HIGHSCHOOLGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0.8,
initializeAfib=TestCKDEquation.initializeAfib,
)
self._black_female_low_cr = Person(
age=52,
gender=NHANESGender.FEMALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_BLACK,
sbp=120,
dbp=80,
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.HIGHSCHOOLGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0.4,
initializeAfib=TestCKDEquation.initializeAfib,
)
self._white_male_high_cr = Person(
age=52,
gender=NHANESGender.MALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120,
dbp=80,
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.HIGHSCHOOLGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=1.2,
initializeAfib=TestCKDEquation.initializeAfib,
)
self._white_male_low_cr = Person(
age=52,
gender=NHANESGender.MALE,
raceEthnicity=NHANESRaceEthnicity.NON_HISPANIC_WHITE,
sbp=120,
dbp=80,
a1c=Person.convert_fasting_glucose_to_a1c(100),
hdl=50,
totChol=150,
ldl=90,
trig=150,
bmi=26.6,
waist=94,
anyPhysicalActivity=1,
education=Education.HIGHSCHOOLGRADUATE,
smokingStatus=SmokingStatus.NEVER,
alcohol=AlcoholCategory.ONETOSIX,
antiHypertensiveCount=0,
statin=0,
otherLipidLoweringMedicationCount=0,
creatinine=0.1,
initializeAfib=TestCKDEquation.initializeAfib,
)