def mnc2vol(mincfile):
f = h5py.File(mincfile)
datatype = str(f['minc-2.0/image/0']['image'].dtype)
rawfile = mincfile+'.raw'
headerfile = mincfile+'.header'
minc2volume.make_raw(mincfile, datatype, rawfile)
minc2volume.make_header(mincfile, datatype, headerfile)
def mnc2vol(mincfile):
if not os.path.exists(mincfile) :
print('Warning: could not find file', mincfile)
exit(1)
f = h5py.File(mincfile, 'r')
datatype = str(f['minc-2.0/image/0']['image'].dtype)
rawfile = mincfile+'.raw'
headerfile = mincfile+'.header'
minc2volume.make_raw(mincfile, datatype, rawfile)
minc2volume.make_header(mincfile, datatype, headerfile)
def mnc2vol(niftifile):
if not os.path.exists(niftifile) :
print('Warning: could not find file', niftifile)
exit(1)
datatype = nib.load(niftifile).get_data().dtype
basename = os.getcwd()+os.sep+ splitext(os.path.basename(niftifile))[0]
rawfile = basename +'.raw'
headerfile = basename +'.header'
minc2volume.make_raw(niftifile, datatype, rawfile)
minc2volume.make_header(niftifile, datatype, headerfile)