def testRefGen():
# We have to build it
if m80tools.available('RefLoci', 'Zm5bFGS'):
x = RefLoci('Zm5bFGS')
else:
m80tools.delete('RefLoci', 'Zm5bFGS', force=True)
gff = os.path.expanduser(os.path.join('raw', 'ZmB73_5b_FGS.gff.gz'))
x = RefLoci('Zm5bFGS')
if len(x) == 0:
x.import_gff(gff)
x.set_primary_feature_type('gene')
return x
def test_available():
Tools.available()
def test_unavailable_bool(simpleCohort):
assert Tools.available(dtype='Cohort',name='ERROR') == False
def test_available_bool(simpleCohort):
assert Tools.available(dtype='Cohort',name='TestCohort') == True
def test_unavailable_bool(simpleCohort):
assert Tools.available(dtype="Cohort", name="ERROR") == False
def test_available_bool(simpleCohort):
assert Tools.available(dtype="Cohort", name="TestCohort") == True
def test_available():
Tools.available()
def test_unavailable_bool(simpleCohort):
assert Tools.available(dtype='Cohort', name='ERROR') == False
def test_available_bool(simpleCohort):
assert Tools.available(dtype='Cohort', name='TestCohort') == True