def __init__(self,
root,
split,
lake="",
transform_function=None,
corrupted=(None, ),
resize=True):
self.split = split
self.transform_function = transform_function()
# 2. GET META
path = "/mnt/home/issam/DatasetsPrivate/fisheries/%s/" % lake
mname = path + '/logs/meta_%s.pkl' % lake
ms.create_dirs(mname)
if os.path.exists(mname) and False:
with open(mname, 'rb') as f:
meta = pickle.load(f)
else:
meta = get_meta(path, corrupted)
# read python dict back from the file
with open(mname, 'wb') as f:
pickle.dump(meta, f)
n = len(meta)
all_fishers = np.array(pd.DataFrame(list(meta))["n_fisher"])
n_mean = all_fishers.mean()
# 1. LAKE CONFIGURATIONS
e_val = int(np.where(all_fishers.cumsum() > n_mean * 100)[0].min())
n_val = int(e_val * 0.2)
e_train = e_val - n_val
e_train = 300
e_val = 350
if split == "train":
indices = np.arange(e_train)
if split == "val":
indices = np.arange(e_train, e_val)
elif split == "test":
indices = np.arange(e_val, n)
self.meta = np.array(meta)[indices]
self.n_objects = self.n_fishers = np.array(
pd.DataFrame(list(self.meta))["n_fisher"])
self.path = path
self.n_classes = 2
def save_images(model, dataset, indices, path):
for i in indices:
print(i)
batch = ms.get_batch(dataset, [i])
try:
if batch["counts"].sum().item() > 0:
blob_dict = visBlobs(model, batch, return_dict=1)
ms.create_dirs(path + "/{}.png".format(i))
ms.save_images(path + "/{}.png".format(i),
blob_dict["with_blobs"])
except:
pass
try:
summary = pd.DataFrame(history["tgt_train"][1:])["acc_tgt"]
results[exp_name] = summary.max()
except:
print("{} skipped...".format(exp_name))
print(pd.Series(results))
# Train Source
if args.mode == "plot_src":
pp_main.plot(ylabel="Triplet Loss", xlabel="Epochs", yscale="log")
path = exp_dict["summary_path"]
pp_main.fig.tight_layout(rect=[0, 0.03, 1, 0.95])
figName = "%s/png_plots/SRC_%s.png" % (path, exp_name)
ms.create_dirs(figName)
pp_main.fig.savefig(figName)
pp_main.fig.tight_layout()
pp_main.fig.suptitle("")
figName = "%s/pdf_plots/SRC_%s.pdf" % (path, exp_name)
ms.create_dirs(figName)
pp_main.fig.savefig(figName, dpi=600)
print("saved {}".format(figName))
if args.mode == "plot_tgt":
pp_main.plot(
def main():
parser = argparse.ArgumentParser()
parser.add_argument('-e', '--exp')
parser.add_argument('-b', '--borgy', default=0, type=int)
parser.add_argument('-br', '--borgy_running', default=0, type=int)
parser.add_argument('-m', '--mode', default="summary")
parser.add_argument('-r', '--reset', default="None")
parser.add_argument('-s', '--status', type=int, default=0)
parser.add_argument('-k', '--kill', type=int, default=0)
parser.add_argument('-g', '--gpu', type=int)
parser.add_argument('-c', '--configList', nargs="+", default=None)
parser.add_argument('-l', '--lossList', nargs="+", default=None)
parser.add_argument('-d', '--datasetList', nargs="+", default=None)
parser.add_argument('-metric', '--metricList', nargs="+", default=None)
parser.add_argument('-model', '--modelList', nargs="+", default=None)
parser.add_argument('-p', '--predictList', nargs="+", default=None)
args = parser.parse_args()
if args.borgy or args.kill:
global_prompt = input("Do all? \n(y/n)\n")
# SEE IF CUDA IS AVAILABLE
assert torch.cuda.is_available()
print("CUDA: %s" % torch.version.cuda)
print("Pytroch: %s" % torch.__version__)
mode = args.mode
exp_name = args.exp
exp_dict = experiments.get_experiment_dict(args, exp_name)
pp_main = None
results = {}
# Get Main Class
project_name = os.path.realpath(__file__).split("/")[-2]
MC = ms.MainClass(path_models="models",
path_datasets="datasets",
path_metrics="metrics/metrics.py",
path_losses="losses/losses.py",
path_samplers="addons/samplers.py",
path_transforms="addons/transforms.py",
path_saves="/mnt/projects/counting/Saves/main/",
project=project_name)
key_set = set()
for model_name, config_name, metric_name, dataset_name, loss_name in product(
exp_dict["modelList"], exp_dict["configList"],
exp_dict["metricList"], exp_dict["datasetList"],
exp_dict["lossList"]):
# if model_name in ["LC_RESFCN"]:
# loss_name = "water_loss"
config = configs.get_config_dict(config_name)
key = ("{} - {} - {}".format(model_name, config_name, loss_name),
"{}_({})".format(dataset_name, metric_name))
if key in key_set:
continue
key_set.add(key)
main_dict = MC.get_main_dict(mode, dataset_name, model_name,
config_name, config, args.reset,
exp_dict["epochs"], metric_name,
loss_name)
main_dict["predictList"] = exp_dict["predictList"]
if mode == "paths":
print("\n{}_({})".format(dataset_name, model_name))
print(main_dict["path_best_model"])
# print( main_dict["exp_name"])
predictList_str = ' '.join(exp_dict["predictList"])
if args.status:
results[key] = borgy.borgy_status(mode, config_name, metric_name,
model_name, dataset_name,
loss_name, args.reset,
predictList_str)
continue
if args.kill:
results[key] = borgy.borgy_kill(mode, config_name, metric_name,
model_name, dataset_name,
loss_name, args.reset,
predictList_str)
continue
if args.borgy:
results[key] = borgy.borgy_submit(project_name, global_prompt,
mode, config_name, metric_name,
model_name, dataset_name,
loss_name, args.reset,
predictList_str)
continue
if mode == "debug":
debug.debug(main_dict)
if mode == "validate":
validate.validate(main_dict)
if mode == "save_gam_points":
train_set, _ = au.load_trainval(main_dict)
model = ms.load_best_model(main_dict)
for i in range(len(train_set)):
print(i, "/", len(train_set))
batch = ms.get_batch(train_set, [i])
fname = train_set.path + "/gam_{}.pkl".format(
batch["index"].item())
points = model.get_points(batch)
ms.save_pkl(fname, points)
import ipdb
ipdb.set_trace() # breakpoint ee49ab9f //
if mode == "save_prm_points":
train_set, _ = au.load_trainval(main_dict)
model = ms.load_best_model(main_dict)
for i in range(len(train_set)):
print(i, "/", len(train_set))
batch = ms.get_batch(train_set, [i])
fname = "{}/prm{}.pkl".format(batch["path"][0],
batch["name"][0])
points = model.get_points(batch)
ms.save_pkl(fname, points)
import ipdb
ipdb.set_trace() # breakpoint 679ce152 //
# train_set, _ = au.load_trainval(main_dict)
# model = ms.load_best_model(main_dict)
# for i in range(len(train_set)):
# print(i, "/", len(train_set))
# batch = ms.get_batch(train_set, [i])
# fname = train_set.path + "/gam_{}.pkl".format(batch["index"].item())
# points = model.get_points(batch)
# ms.save_pkl(fname, points)
# if mode == "pascal_annList":
# data_utils.pascal2lcfcn_points(main_dict)
if mode == "upperboundmasks":
import ipdb
ipdb.set_trace() # breakpoint 02fac8ce //
results = au.test_upperboundmasks(main_dict, reset=args.reset)
print(pd.DataFrame(results))
if mode == "model":
results = au.test_model(main_dict, reset=args.reset)
print(pd.DataFrame(results))
if mode == "upperbound":
results = au.test_upperbound(main_dict, reset=args.reset)
print(pd.DataFrame(results))
if mode == "MUCov":
gtAnnDict = au.load_gtAnnDict(main_dict, reset=args.reset)
# model = ms.load_best_model(main_dict)
fname = main_dict["path_save"] + "/pred_annList.pkl"
if not os.path.exists(fname):
_, val_set = au.load_trainval(main_dict)
model = ms.load_best_model(main_dict)
pred_annList = au.dataset2annList(model,
val_set,
predict_method="BestDice",
n_val=None)
ms.save_pkl(fname, pred_annList)
else:
pred_annList = ms.load_pkl(fname)
import ipdb
ipdb.set_trace() # breakpoint 527a7f36 //
pred_annList = au.load_predAnnList(main_dict,
predict_method="BestObjectness")
# 0.31 best objectness pred_annList =
# 0.3482122335421256
# au.get_MUCov(gtAnnDict, pred_annList)
au.get_SBD(gtAnnDict, pred_annList)
if mode == "dic_sbd":
import ipdb
ipdb.set_trace() # breakpoint 4af08a17 //
if mode == "point_mask":
from datasets import base_dataset
import ipdb
ipdb.set_trace() # breakpoint 7fd55e0c //
_, val_set = ms.load_trainval(main_dict)
batch = ms.get_batch(val_set, [1])
model = ms.load_best_model(main_dict)
pred_dict = model.LCFCN.predict(batch)
# ms.pretty_vis(batch["images"], base_dataset.batch2annList(batch))
ms.images(ms.pretty_vis(
batch["images"],
model.LCFCN.predict(batch,
predict_method="original")["annList"]),
win="blobs")
ms.images(ms.pretty_vis(batch["images"],
base_dataset.batch2annList(batch)),
win="erww")
ms.images(batch["images"],
batch["points"],
denorm=1,
enlarge=1,
win="e21e")
import ipdb
ipdb.set_trace() # breakpoint ab9240f0 //
if mode == "lcfcn_output":
import ipdb
ipdb.set_trace() # breakpoint 7fd55e0c //
gtAnnDict = au.load_gtAnnDict(main_dict, reset=args.reset)
if mode == "load_gtAnnDict":
_, val_set = au.load_trainval(main_dict)
gtAnnDict = au.load_gtAnnDict(val_set)
# gtAnnClass = COCO(gtAnnDict)
# au.assert_gtAnnDict(main_dict, reset=None)
# _,val_set = au.load_trainval(main_dict)
# annList_path = val_set.annList_path
# fname_dummy = annList_path.replace(".json","_best.json")
# predAnnDict = ms.load_json(fname_dummy)
import ipdb
ipdb.set_trace() # breakpoint 100bfe1b //
pred_annList = ms.load_pkl(main_dict["path_best_annList"])
# model = ms.load_best_model(main_dict)
_, val_set = au.load_trainval(main_dict)
batch = ms.get_batch(val_set, [1])
import ipdb
ipdb.set_trace() # breakpoint 2310bb33 //
model = ms.load_best_model(main_dict)
pred_dict = model.predict(batch, "BestDice", "mcg")
ms.images(batch["images"],
au.annList2mask(pred_dict["annList"])["mask"],
denorm=1)
# pointList2UpperBoundMCG
pred_annList = au.load_predAnnList(main_dict,
predict_method="BestDice",
proposal_type="mcg",
reset="reset")
# annList = au.pointList2UpperBoundMCG(batch["lcfcn_pointList"], batch)["annList"]
ms.images(batch["images"],
au.annList2mask(annList)["mask"],
denorm=1)
pred_annList = au.load_BestMCG(main_dict, reset="reset")
# pred_annList = au.dataset2annList(model, val_set,
# predict_method="BestDice",
# n_val=None)
au.get_perSizeResults(gtAnnDict, pred_annList)
if mode == "vis":
_, val_set = au.load_trainval(main_dict)
batch = ms.get_batch(val_set, [3])
import ipdb
ipdb.set_trace() # breakpoint 05e6ef16 //
vis.visBaselines(batch)
model = ms.load_best_model(main_dict)
vis.visBlobs(model, batch)
if mode == "qual":
model = ms.load_best_model(main_dict)
_, val_set = au.load_trainval(main_dict)
path = "/mnt/home/issam/Summaries/{}_{}".format(
dataset_name, model_name)
try:
ms.remove_dir(path)
except:
pass
n_images = len(val_set)
base = "{}_{}".format(dataset_name, model_name)
for i in range(50):
print(i, "/10", "- ", base)
index = np.random.randint(0, n_images)
batch = ms.get_batch(val_set, [index])
if len(batch["lcfcn_pointList"]) == 0:
continue
image = vis.visBlobs(model, batch, return_image=True)
# image_baselines = vis.visBaselines(batch, return_image=True)
# imgAll = np.concatenate([image, image_baselines], axis=1)
fname = path + "/{}_{}.png".format(i, base)
ms.create_dirs(fname)
ms.imsave(fname, image)
if mode == "test_baselines":
import ipdb
ipdb.set_trace() # breakpoint b51c5b1f //
results = au.test_baselines(main_dict, reset=args.reset)
print(pd.DataFrame(results))
if mode == "test_best":
au.test_best(main_dict)
if mode == "qualitative":
au.qualitative(main_dict)
if mode == "figure1":
from PIL import Image
from addons import transforms
model = ms.load_best_model(main_dict)
_, val_set = au.load_trainval(main_dict)
# proposals_path = "/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/ProposalsSharp/"
# vidList = glob("/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/stuttgart_01/*")
# vidList.sort()
# pretty_image = ms.visPretty(model, batch = ms.get_batch(val_set, [i]), with_void=1, win="with_void")
batch = ms.get_batch(val_set, [68])
bestdice = ms.visPretty(model,
batch=batch,
with_void=0,
win="no_void")
blobs = ms.visPretty(model,
batch=batch,
predict_method="blobs",
with_void=0,
win="no_void")
ms.images(bestdice, win="BestDice")
ms.images(blobs, win="Blobs")
ms.images(batch["images"], denorm=1, win="Image")
ms.images(batch["images"],
batch["points"],
enlarge=1,
denorm=1,
win="Points")
import ipdb
ipdb.set_trace() # breakpoint cf4bb3d3 //
if mode == "video2":
from PIL import Image
from addons import transforms
model = ms.load_best_model(main_dict)
_, val_set = au.load_trainval(main_dict)
# proposals_path = "/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/ProposalsSharp/"
# vidList = glob("/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/stuttgart_01/*")
# vidList.sort()
index = 0
for i in range(len(val_set)):
# pretty_image = ms.visPretty(model, batch = ms.get_batch(val_set, [i]), with_void=1, win="with_void")
batch = ms.get_batch(val_set, [i])
pretty_image = ms.visPretty(model,
batch=batch,
with_void=0,
win="no_void")
# pred_dict = model.predict(batch, predict_method="BestDice")
path_summary = main_dict["path_summary"]
ms.create_dirs(path_summary + "/tmp")
ms.imsave(
path_summary + "vid_mask_{}.png".format(index),
ms.get_image(batch["images"],
batch["points"],
enlarge=1,
denorm=1))
index += 1
ms.imsave(path_summary + "vid_mask_{}.png".format(index),
pretty_image)
index += 1
# ms.imsave(path_summary+"vid1_full_{}.png".format(i), ms.get_image(img, pred_dict["blobs"], denorm=1))
print(i, "/", len(val_set))
if mode == "video":
from PIL import Image
from addons import transforms
model = ms.load_best_model(main_dict)
# _, val_set = au.load_trainval(main_dict)
proposals_path = "/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/ProposalsSharp/"
vidList = glob(
"/mnt/datasets/public/issam/Cityscapes/demoVideo/leftImg8bit/demoVideo/stuttgart_01/*"
)
vidList.sort()
for i, img_path in enumerate(vidList):
image = Image.open(img_path).convert('RGB')
image = image.resize((1200, 600), Image.BILINEAR)
img, _ = transforms.Tr_WTP_NoFlip()([image, image])
pred_dict = model.predict(
{
"images": img[None],
"split": ["test"],
"resized": torch.FloatTensor([1]),
"name": [ms.extract_fname(img_path)],
"proposals_path": [proposals_path]
},
predict_method="BestDice")
path_summary = main_dict["path_summary"]
ms.create_dirs(path_summary + "/tmp")
ms.imsave(path_summary + "vid1_mask_{}.png".format(i),
ms.get_image(pred_dict["blobs"]))
ms.imsave(path_summary + "vid1_full_{}.png".format(i),
ms.get_image(img, pred_dict["blobs"], denorm=1))
print(i, "/", len(vidList))
if mode == "5_eval_BestDice":
gtAnnDict = au.load_gtAnnDict(main_dict)
gtAnnClass = COCO(gtAnnDict)
results = au.assert_gtAnnDict(main_dict, reset=None)
if mode == "cp_annList":
ms.dataset2cocoformat(dataset_name="CityScapes")
if mode == "pascal2lcfcn_points":
data_utils.pascal2lcfcn_points(main_dict)
if mode == "cp2lcfcn_points":
data_utils.cp2lcfcn_points(main_dict)
if mode == "train":
train.main(main_dict)
import ipdb
ipdb.set_trace() # breakpoint a5d091b9 //
if mode == "train_only":
train.main(main_dict, train_only=True)
import ipdb
ipdb.set_trace() # breakpoint a5d091b9 //
if mode == "sharpmask2psfcn":
for split in ["train", "val"]:
root = "/mnt/datasets/public/issam/COCO2014/ProposalsSharp/"
path = "{}/sharpmask/{}/jsons/".format(root, split)
jsons = glob(path + "*.json")
propDict = {}
for k, json in enumerate(jsons):
print("{}/{}".format(k, len(jsons)))
props = ms.load_json(json)
for p in props:
if p["image_id"] not in propDict:
propDict[p["image_id"]] = []
propDict[p["image_id"]] += [p]
for k in propDict.keys():
fname = "{}/{}.json".format(root, k)
ms.save_json(fname, propDict[k])
if mode == "cp2coco":
import ipdb
ipdb.set_trace() # breakpoint f2eb9e70 //
dataset2cocoformat.cityscapes2cocoformat(main_dict)
# train.main(main_dict)
import ipdb
ipdb.set_trace() # breakpoint a5d091b9 //
if mode == "train_lcfcn":
train_lcfcn.main(main_dict)
import ipdb
ipdb.set_trace() # breakpoint a5d091b9 //
if mode == "summary":
try:
history = ms.load_history(main_dict)
# if predictList_str == "MAE":
# results[key] = "{}/{}: {:.2f}".format(history["best_model"]["epoch"],
# history["epoch"],
# history["best_model"][metric_name])
# else:
val_dict = history["val"][-1]
val_dict = history["best_model"]
iou25 = val_dict["0.25"]
iou5 = val_dict["0.5"]
iou75 = val_dict["0.75"]
results[key] = "{}/{}: {:.1f} - {:.1f} - {:.1f}".format(
val_dict["epoch"], history["epoch"], iou25 * 100,
iou5 * 100, iou75 * 100)
# if history["val"][-1]["epoch"] != history["epoch"]:
# results[key] += " | Val {}".format(history["epoch"])
try:
results[key] += " | {}/{}".format(
len(history["trained_batch_names"]),
history["train"][-1]["n_samples"])
except:
pass
except:
pass
if mode == "vals":
history = ms.load_history(main_dict)
for i in range(1, len(main_dict["predictList"]) + 1):
if len(history['val']) == 0:
res = "NaN"
continue
else:
res = history["val"][-i]
map50 = res["map50"]
map75 = res["map75"]
# if map75 < 1e-3:
# continue
string = "{} - {} - map50: {:.2f} - map75: {:.2f}".format(
res["epoch"], res["predict_name"], map50, map75)
key_tmp = list(key).copy()
key_tmp[1] += " {} - {}".format(metric_name,
res["predict_name"])
results[tuple(key_tmp)] = string
# print("map75", pd.DataFrame(history["val"])["map75"].max())
# df = pd.DataFrame(history["vals"][:20])["water_loss_B"]
# print(df)
try:
print(ms.dict2frame(results))
except:
print("Results not printed...")