Пример #1
0
def denoiser_test(denoiser):
    ldct_list = sorted(glob(args.ldct_test_file_path))
    ndct_list = sorted(glob(args.ndct_test_file_path))
    denoiser.test(ldct_list,
                  ndct_list,
                  ckpt_dir=args.ckpt_dir,
                  save_dir=args.test_dir)
Пример #2
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def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    # # maxV
    # maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    # maxV = maxV['maxV']
    # print maxV

    #--------------------------------------------------------------------------
    # read yaoshen's journal2 data
    #--------------------------------------------------------------------------
    snr_dir = '/space/neza/2/users/yaoshen/NEU/Research/MRI filtering/mcxlab_nightlybuild/data'

    #-------#
    # 1e5
    #-------#
    snr_dat = get_snr_data(
        snr_dir +
        '/journal2_50ns_vol100_homo_1e5_pack1.mat')  # return 100 x (100x100)
    print("[Test] input shape : {}, min_val = {}\n".format(
        snr_dat.shape, np.amin(snr_dat)))
    [samples, im_h, im_w] = snr_dat.shape
    input_dat = np.reshape(snr_dat,
                           (samples, im_h, im_w, 1))  # extend 1 dimension

    # preprocess
    input_dat = np.log(input_dat + 1.)
    # input_dat = input_dat / maxV

    denoiser.test(input_dat,
                  ckpt_dir=args.ckpt_dir,
                  outFile='snr_hom1e5_nn.mat')
Пример #3
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def denoiser_test(denoiser):

    # maxV 
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV


    #--------------------------------------------------------------------------
    # 
    #--------------------------------------------------------------------------

    im_h, im_w = 100, 100

    input_noisy1  = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_noisy50 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    input_noisy1[0, :, :, :]  = mat2np('../../data/rand2d/1e+05/test1.mat', maxV=maxV, im_h=im_h, im_w=im_w)
    input_noisy50[0, :, :, :] = mat2np('../../data/rand2d/1e+05/test50.mat', maxV=maxV, im_h=im_h, im_w=im_w)

    denoiser.test(input_noisy1, ckpt_dir=args.ckpt_dir,
                  outFile='rand2d1e5-test1.mat')

    denoiser.test(input_noisy50, ckpt_dir=args.ckpt_dir,
                  outFile='rand2d1e5-test50.mat')
Пример #4
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def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # plan B : apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    #------------
    # 1e5
    #------------
    noisy50 = '../data/osa_data/1e+05/1/osa_phn1e+05_test1_img50.mat'
    noisymat50 = spio.loadmat(noisy50, squeeze_me=True)  # the output is a dict
    noisyData50 = noisymat50['currentImage']

    (im_h, im_w) = noisyData50.shape

    noisyData50 = np.reshape(noisyData50,
                             (im_h, im_w, 1))  # extend one dimension

    # normalize data
    noisyData50 = np.log(noisyData50 + 1.)

    # assume it is 100 x 100 x 100 voxel
    input_noisy50 = np.zeros((100, im_h, im_w, 1),
                             dtype=np.float32)  # 4D matrix

    # update
    for i in xrange(100):
        input_noisy50[i, :, :, :] = noisyData50

#    startT = time.time()
    denoiser.test(input_noisy50,
                  ckpt_dir=args.ckpt_dir,
                  outFile='1e5model-1e5-log_all.mat')
Пример #5
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def denoiser_test(denoiser):
    test_files_clean = sorted(
        glob('./data/test/{}/*.png'.format(args.test_set_clean)))
    test_files_noisy = sorted(
        glob('./data/test/{}/*.png'.format(args.test_set_noisy)))
    print(test_files_clean)
    denoiser.test(test_files_clean,
                  test_files_noisy,
                  ckpt_dir=checkpoint_dir,
                  save_dir=test_dir)
Пример #6
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def denoiser_test(denoiser):
    test_data = args.test_data
    print(
        "[*] Start testing on real data. Working directory: %s. Collecting data from %s and storing test results in %s"
        % (os.getcwd(), test_data, args.test_dir))
    test_files = glob((test_data + '/*.npy').format('float32'))
    denoiser.test(test_files,
                  ckpt_dir=checkpoint_dir,
                  save_dir=args.test_dir,
                  dataset_dir=test_data,
                  stride=args.stride_size)
Пример #7
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def denoiser_test(denoiser, save_dir):
    noisy_test_set_path = './data/test/{}/sigma{}'.format(
        args.test_set, int(args.sigma))
    assert os.path.exists(
        noisy_test_set_path
    ) == True, 'No noisy test set available! Create using create_noisy_test_sets.py'
    noisy_files = natsort.natsorted(
        glob('{}/*.npy'.format(noisy_test_set_path)))
    test_files = natsort.natsorted(
        glob('./data/test/{}/*.png'.format(args.test_set)))

    denoiser.test(test_files, noisy_files, save_dir)
Пример #8
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def denoiser_test(denoiser):

    noisy_eval_files = glob('./data/test/noisy/*.png')
#    n = [int(i) for i in map(lambda x: x.split('/')[-1].split('.png')[0], noisy_eval_files)]
#    noisy_eval_files = [x for (y, x) in sorted(zip(n, noisy_eval_files))]
    noisy_eval_files = sorted(noisy_eval_files)
    eval_files = glob('./data/test/original/*.png')
    eval_files = sorted(eval_files)
    start = time.time()
    denoiser.test(eval_files, noisy_eval_files, ckpt_dir=args.ckpt_dir, save_dir='./data/denoised', temporal=args.temporal)
    end = time.time()
    print ("Elapsed time:", end-start);
Пример #9
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def denoiser_test(denoiser):
    noisy_eval_files = glob('/home/mli/tomograms/pycharm_demos/single_density/without_Gaussian_shapes/normal_test/with_noise/1024*1024_with_oversampling=2/phase_contrast_images/Gaussian_noise_PPSNR=12dB/npy_format/phase_contrast_image_distance_4_in_npy_format/test/*.npy')
    #    n = [int(i) for i in map(lambda x: x.split('/')[-1].split('.png')[0], noisy_eval_files)]
    #    noisy_eval_files = [x for (y, x) in sorted(zip(n, noisy_eval_files))]
    noisy_eval_files = sorted(noisy_eval_files)
    eval_files = glob('/home/mli/tomograms/pycharm_demos/single_density/without_Gaussian_shapes/normal_test/without_noise/1024*1024_with_oversampling=2/phase_contrast_images_1_without_elliptical_cylinder/nd_zoom_order=1/npy_format/phase_contrast_image_distance_4_in_npy_format/test/*.npy')
    eval_files = sorted(eval_files)
    start = time.time()
    denoiser.test(eval_files, noisy_eval_files, ckpt_dir=args.ckpt_dir, save_dir='./data/denoised')  # temporal=args.temporal
    end = time.time()
    print
    "Elapsed time:", end - start
Пример #10
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def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    # maxV 
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV



    #------------
    # 1e5 osa simulation: 100 images along y-axis
    #------------
    im_h, im_w = 100, 100
    N = 100

    input_noisy1 = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    for i in xrange(1, 101):
        noisy1  = '../../data/hetero3d/1e+05/img_[X].mat'
        noisy1 = noisy1.replace('[X]', str(i))

        # read mat file into np array
        noisymat1 = spio.loadmat(noisy1, squeeze_me=True)  # the output is a dict
        noisyData1 = noisymat1['currentImage']
        noisyData1 = np.reshape(noisyData1, (im_h, im_w, 1))

        # preprocess
        noisyData1 = np.log(noisyData1 + 1.)
        noisyData1  = noisyData1  / maxV

        # store the data into 4D tensor, indexing starting from 0
        input_noisy1[i-1, :, :, :] = noisyData1

    
    #
    # resize the input image from 100x100 to 128x128
    #
    noisy_data_resize = transform_resize(input_noisy1)




    # 
    # the output will be the (residual) noise in this case
    #
    denoiser.test(noisy_data_resize, ckpt_dir=args.ckpt_dir,
                  outFile='hetero3d.mat')
Пример #11
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def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    #------------
    # 1e5
    #------------
    noisy1  = '../../data/rand2d/1e+05/test1.mat'
    noisy50 = '../../data/rand2d/1e+05/test50.mat'

    noisymat1 = spio.loadmat(noisy1, squeeze_me=True)  # the output is a dict
    noisymat50 = spio.loadmat(noisy50, squeeze_me=True)  # the output is a dict

    noisyData1 = noisymat1['currentImage']
    noisyData50 = noisymat50['currentImage']

    (im_h, im_w) = noisyData1.shape

    noisyData1 = np.reshape(noisyData1, (im_h, im_w, 1))
    noisyData50 = np.reshape(noisyData50, (im_h, im_w, 1))

    # normalize data
    noisyData1 = np.log(noisyData1 + 1.)
    noisyData50 = np.log(noisyData50 + 1.)

    # maxV 
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    noisyData1  = noisyData1  / maxV
    noisyData50 = noisyData50 / maxV



    input_noisy1 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_noisy50 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    ### update
    input_noisy1[0, :, :, :] = noisyData1
    input_noisy50[0, :, :, :] = noisyData50

    denoiser.test(input_noisy1, ckpt_dir=args.ckpt_dir,
                  outFile='1e5model-test1.mat')
    denoiser.test(input_noisy50, ckpt_dir=args.ckpt_dir,
                  outFile='1e5model-test50.mat')
def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    #--------------------------------------------------------------------------
    # rand2d mcx for a squre image, using yaoshen's journal2 data
    #--------------------------------------------------------------------------
    #snr_dir = '/home/users/leiming/files_on_pangu/denoising_mcx/prepare_data/spie2d_customize/test_snr/het_absorber_square_x10_yy/1e+05'
    snr_dir = '../../prepare_data/spie2d_customize/test_snr/het_absorber_square_x10_yy/1e+05'

    im_h, im_w = 100, 100
    N = 100

    input_noisy = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    #-------#
    # 1e5
    #-------#

    for i in xrange(1, N + 1):
        noisy_file = snr_dir + '/test[X].mat'
        noisy_file = noisy_file.replace('[X]', str(i))

        # read mat
        noisymat = spio.loadmat(noisy_file,
                                squeeze_me=True)  # the output is a dict
        noisyData = noisymat['currentImage']
        noisyData = np.reshape(noisyData, (im_h, im_w, 1))

        # store the data into 4D tensor, indexing starting from 0
        input_noisy[i - 1, :, :, :] = noisyData

    # preprocess
    input_noisy = np.log(input_noisy + 1.)
    input_noisy = input_noisy / maxV

    denoiser.test(input_noisy,
                  ckpt_dir=args.ckpt_dir,
                  outFile='snr_2d_het_absorber_square_x10_p5nn_yy.mat')
Пример #13
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def denoiser_test(denoiser):

    noisy_eval_files = glob(f'{args.dir}/test/noisy/*.png')
    #    n = [int(i) for i in map(lambda x: x.split('/')[-1].split('.png')[0], noisy_eval_files)]
    #    noisy_eval_files = [x for (y, x) in sorted(zip(n, noisy_eval_files))]
    noisy_eval_files = sorted(noisy_eval_files)
    eval_files = glob(f'{args.dir}/test/original/*.png')
    eval_files = sorted(eval_files)
    start = time.time()
    print(args)
    denoiser.test(eval_files,
                  noisy_eval_files,
                  ckpt_dir=os.path.join(args.dir, args.ckpt_dir),
                  save_dir=os.path.join(args.dir, args.test_dir),
                  temporal=0)  #args.temporal)
    end = time.time()
    print("Elapsed time:", end - start)
Пример #14
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def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    ## maxV
    #maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    #maxV = maxV['maxV']
    #print maxV

    #------------
    # 1e5 osa simulation: 100 images along y-axis
    #------------
    im_h, im_w = 100, 100
    N = 100

    input_noisy1 = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    for i in xrange(1, 101):
        noisy1 = '../../data/hetero3d/1e+05/img_[X].mat'
        noisy1 = noisy1.replace('[X]', str(i))

        # read mat file into np array
        noisymat1 = spio.loadmat(noisy1,
                                 squeeze_me=True)  # the output is a dict
        noisyData1 = noisymat1['currentImage']
        noisyData1 = np.reshape(noisyData1, (im_h, im_w, 1))

        # preprocess
        noisyData1 = np.log(noisyData1 + 1.)
        # noisyData1  = noisyData1  / maxV

        # store the data into 4D tensor, indexing starting from 0
        input_noisy1[i - 1, :, :, :] = noisyData1

    print("[Test] input_noisy shape : {}, min_val = {}\n".format(
        input_noisy1.shape, np.amin(input_noisy1)))

    denoiser.test(input_noisy1,
                  ckpt_dir=args.ckpt_dir,
                  outFile='test_hetero3d.mat')
Пример #15
0
def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    # maxV 
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV



    #------------
    # 1e5 osa simulation: 100 images along y-axis
    #------------
    im_h, im_w = 100, 100
    N = 100

    input_noisy1 = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    for i in xrange(1, 101):
        noisy1  = '../../data/osa/1e+05/1/y/osa_phn1e+05_test1_img[X].mat'
        noisy1 = noisy1.replace('[X]', str(i))

        # read mat file into np array
        noisymat1 = spio.loadmat(noisy1, squeeze_me=True)  # the output is a dict
        noisyData1 = noisymat1['currentImage']
        noisyData1 = np.reshape(noisyData1, (im_h, im_w, 1))

        # preprocess
        noisyData1 = np.log(noisyData1 + 1.)
        noisyData1  = noisyData1  / maxV

        # store the data into 4D tensor, indexing starting from 0
        input_noisy1[i-1, :, :, :] = noisyData1


    # the output will be the residual
    denoiser.test(input_noisy1, ckpt_dir=args.ckpt_dir,
                  outFile='residual-h**o-test1.mat')
Пример #16
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def Denoising(denoiser, X):
    (im_h, im_w) = X.shape

    X_new = np.reshape(X, (im_h, im_w, 1))  # extend one dimension

    # normalize data
    X_new = np.log(X_new + 1.)

    inputX = np.zeros((1, im_h, im_w, 1), dtype=np.float32) # 4D matrix

    # update
    inputX[0, :, :, :]  = X_new 

    return denoiser.test(inputX, ckpt_dir=args.ckpt_dir)
Пример #17
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def denoiser_test(denoiser):
    test_files = glob('{}/*.png'.format(args.test_set))
    denoiser.test(test_files, ckpt_dir=args.ckpt_dir, save_dir=args.test_dir)
Пример #18
0
def denoiser_test(denoiser):
    test_files = glob('./data/test/Set12/*.png'.format(args.test_set))
    denoiser.test(test_files, ckpt_dir=args.ckpt_dir, save_dir=args.test_dir)
Пример #19
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def denoiser_test(denoiser):
    ldct_files= sorted(glob('./noisydata/sparse/test/*img.flt'.format(args.test_set)))
    ldct_files= load_floats(ldct_files)
    ndct_files= sorted(glob('./noisydata/ndct/test/*img.flt'.format(args.test_set)))
    ndct_files= load_floats(ndct_files)
    denoiser.test(ldct_files, ndct_files, ckpt_dir=args.ckpt_dir, save_dir=args.test_dir)
Пример #20
0
def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    #
    # train model with 1-2K hom, and 1-4K het
    # test the model with 2001
    #

    im_h, im_w = 100, 100
    N = 4  #  1e4, 1e5, 1e6, 1e7

    #--------------------------------------------------------------------------
    # het
    #--------------------------------------------------------------------------

    input_noisy = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    input_noisy[0, :, :, :] = mat2np(
        '../../data/spie2d_old/het/1e+04/test4001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[1, :, :, :] = mat2np(
        '../../data/spie2d_old/het/1e+05/test4001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[2, :, :, :] = mat2np(
        '../../data/spie2d_old/het/1e+06/test4001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[3, :, :, :] = mat2np(
        '../../data/spie2d_old/het/1e+07/test4001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)

    print("[Test] input_noisy shape : {}, min_val = {}\n".format(
        input_noisy.shape, np.amin(input_noisy)))

    denoiser.test(input_noisy, ckpt_dir=args.ckpt_dir, outFile='test_het.mat')

    #--------------------------------------------------------------------------
    # hom
    #--------------------------------------------------------------------------

    input_noisy = np.zeros((N, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    input_noisy[0, :, :, :] = mat2np(
        '../../data/spie2d_old/hom/1e+04/test2001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[1, :, :, :] = mat2np(
        '../../data/spie2d_old/hom/1e+05/test2001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[2, :, :, :] = mat2np(
        '../../data/spie2d_old/hom/1e+06/test2001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)
    input_noisy[3, :, :, :] = mat2np(
        '../../data/spie2d_old/hom/1e+07/test2001.mat',
        maxV=maxV,
        im_h=im_h,
        im_w=im_w)

    print("[Test] input_noisy shape : {}, min_val = {}\n".format(
        input_noisy.shape, np.amin(input_noisy)))

    denoiser.test(input_noisy, ckpt_dir=args.ckpt_dir, outFile='test_hom.mat')
Пример #21
0
def denoiser_test(denoiser, save_dir):
    print('Testing on {} dataset'.format(args.test_set))
    test_files = natsort.natsorted(
        glob('./data/test/{}/*.png'.format(args.test_set)))

    denoiser.test(test_files, save_dir)
def denoiser_test(denoiser):

    #--------------------------------------------------------------------------
    # apply log(x+1) to the raw value
    #--------------------------------------------------------------------------

    #------------
    # hom square
    #------------
    p5 = '../../prepare_data/spie2d_customize/journal2_hom/square_1e5.mat'
    p6 = '../../prepare_data/spie2d_customize/journal2_hom/square_1e6.mat'

    matp5 = spio.loadmat(p5, squeeze_me=True)  # the output is a dict
    matp6 = spio.loadmat(p6, squeeze_me=True)  # the output is a dict

    datap5 = matp5['currentImage']
    datap6 = matp6['currentImage']

    (im_h, im_w) = datap5.shape

    datap5 = np.reshape(datap5, (im_h, im_w, 1))
    datap6 = np.reshape(datap6, (im_h, im_w, 1))

    # normalize data
    datap5 = np.log(datap5 + 1.)
    datap6 = np.log(datap6 + 1.)

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    datap5 = datap5 / maxV
    datap6 = datap6 / maxV

    input_p5 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_p6 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    ### update
    input_p5[0, :, :, :] = datap5
    input_p6[0, :, :, :] = datap6

    denoiser.test(input_p5,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-hom-square-p5.mat')
    denoiser.test(input_p6,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-hom-square-p6.mat')

    #------------
    # hom square02
    #------------
    p5 = '../../prepare_data/spie2d_customize/journal2_hom/square02_1e5.mat'
    p6 = '../../prepare_data/spie2d_customize/journal2_hom/square02_1e6.mat'

    matp5 = spio.loadmat(p5, squeeze_me=True)  # the output is a dict
    matp6 = spio.loadmat(p6, squeeze_me=True)  # the output is a dict

    datap5 = matp5['currentImage']
    datap6 = matp6['currentImage']

    (im_h, im_w) = datap5.shape

    datap5 = np.reshape(datap5, (im_h, im_w, 1))
    datap6 = np.reshape(datap6, (im_h, im_w, 1))

    # normalize data
    datap5 = np.log(datap5 + 1.)
    datap6 = np.log(datap6 + 1.)

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    datap5 = datap5 / maxV
    datap6 = datap6 / maxV

    input_p5 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_p6 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    ### update
    input_p5[0, :, :, :] = datap5
    input_p6[0, :, :, :] = datap6

    denoiser.test(input_p5,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-hom-square02-p5.mat')
    denoiser.test(input_p6,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-hom-square02-p6.mat')

    #--------------------------------------------------------------------------
    # absorber
    #--------------------------------------------------------------------------
    p5 = '../../prepare_data/spie2d_customize/journal2_absorber/square_1e5.mat'
    p6 = '../../prepare_data/spie2d_customize/journal2_absorber/square_1e6.mat'

    matp5 = spio.loadmat(p5, squeeze_me=True)  # the output is a dict
    matp6 = spio.loadmat(p6, squeeze_me=True)  # the output is a dict

    datap5 = matp5['currentImage']
    datap6 = matp6['currentImage']

    (im_h, im_w) = datap5.shape

    datap5 = np.reshape(datap5, (im_h, im_w, 1))
    datap6 = np.reshape(datap6, (im_h, im_w, 1))

    # normalize data
    datap5 = np.log(datap5 + 1.)
    datap6 = np.log(datap6 + 1.)

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    datap5 = datap5 / maxV
    datap6 = datap6 / maxV

    input_p5 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_p6 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    ### update
    input_p5[0, :, :, :] = datap5
    input_p6[0, :, :, :] = datap6

    denoiser.test(input_p5,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-absorber-square-p5.mat')
    denoiser.test(input_p6,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-absorber-square-p6.mat')

    #------------
    # absorber square02
    #------------
    p5 = '../../prepare_data/spie2d_customize/journal2_absorber/square02_1e5.mat'
    p6 = '../../prepare_data/spie2d_customize/journal2_absorber/square02_1e6.mat'

    matp5 = spio.loadmat(p5, squeeze_me=True)  # the output is a dict
    matp6 = spio.loadmat(p6, squeeze_me=True)  # the output is a dict

    datap5 = matp5['currentImage']
    datap6 = matp6['currentImage']

    (im_h, im_w) = datap5.shape

    datap5 = np.reshape(datap5, (im_h, im_w, 1))
    datap6 = np.reshape(datap6, (im_h, im_w, 1))

    # normalize data
    datap5 = np.log(datap5 + 1.)
    datap6 = np.log(datap6 + 1.)

    # maxV
    maxV = spio.loadmat('maxV.mat', squeeze_me=True)  # the output is a dict
    maxV = maxV['maxV']
    print maxV

    datap5 = datap5 / maxV
    datap6 = datap6 / maxV

    input_p5 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix
    input_p6 = np.zeros((1, im_h, im_w, 1), dtype=np.float32)  # 4D matrix

    ### update
    input_p5[0, :, :, :] = datap5
    input_p6[0, :, :, :] = datap6

    denoiser.test(input_p5,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-absorber-square02-p5.mat')
    denoiser.test(input_p6,
                  ckpt_dir=args.ckpt_dir,
                  outFile='j2-absorber-square02-p6.mat')
Пример #23
0
def denoiser_test(denoiser):
    test_files = glob('./data/test/{}/*.jpg'.format(args.test_set))
    denoiser.test(test_files, ckpt_dir=args.ckpt_dir, save_dir=args.test_dir)