def setUp(self, **kwargs):
super(MetricsEhrApiTestBase, self).setUp(use_mysql=True, **kwargs)
self.dao = ParticipantDao()
self.ps_dao = ParticipantSummaryDao()
self.ehr_receipt_dao = EhrReceiptDao()
self.ps = ParticipantSummary()
self.calendar_dao = CalendarDao()
self.site_dao = SiteDao()
self.hpo_dao = HPODao()
self.org_dao = OrganizationDao()
self.hpo_test = self._make_hpo(hpoId=TEST_HPO_ID,
name=TEST_HPO_NAME,
displayName='Test',
organizationType=OrganizationType.UNSET)
self.hpo_foo = self._make_hpo(hpoId=10, name='FOO', displayName='Foo')
self.hpo_bar = self._make_hpo(hpoId=11, name='BAR', displayName='Bar')
self.org_foo_a = self._make_org(organizationId=10,
externalId='FOO_A',
displayName='Foo A',
hpoId=self.hpo_foo.hpoId)
self.org_bar_a = self._make_org(organizationId=11,
externalId='BAR_A',
displayName='Bar A',
hpoId=self.hpo_bar.hpoId)
def create_summary_for_participant(obj):
return ParticipantSummary(
participantId=obj.participantId,
biobankId=obj.biobankId,
signUpTime=obj.signUpTime,
hpoId=obj.hpoId,
withdrawalStatus=obj.withdrawalStatus,
suspensionStatus=obj.suspensionStatus,
enrollmentStatus=EnrollmentStatus.INTERESTED)
def testUpdateEnrollmentStatus(self):
summary = ParticipantSummary(
participantId=1,
biobankId=2,
consentForStudyEnrollment=QuestionnaireStatus.SUBMITTED,
consentForElectronicHealthRecords=QuestionnaireStatus.SUBMITTED,
enrollmentStatus=EnrollmentStatus.INTERESTED)
self.dao.update_enrollment_status(summary)
self.assertEquals(EnrollmentStatus.MEMBER, summary.enrollmentStatus)
def testUpdateEnrollmentStatus(self):
ehr_consent_time = datetime.datetime(2018, 3, 1)
summary = ParticipantSummary(
participantId=1,
biobankId=2,
consentForStudyEnrollment=QuestionnaireStatus.SUBMITTED,
consentForElectronicHealthRecords=QuestionnaireStatus.SUBMITTED,
consentForElectronicHealthRecordsTime=ehr_consent_time,
enrollmentStatus=EnrollmentStatus.INTERESTED)
self.dao.update_enrollment_status(summary)
self.assertEquals(EnrollmentStatus.MEMBER, summary.enrollmentStatus)
self.assertEquals(ehr_consent_time, summary.enrollmentStatusMemberTime)
def _participant_summary_with_defaults(**kwargs):
common_args = {
'hpoId': UNSET_HPO_ID,
'numCompletedPPIModules': 0,
'numCompletedBaselinePPIModules': 0,
'numBaselineSamplesArrived': 0,
'withdrawalStatus': WithdrawalStatus.NOT_WITHDRAWN,
'suspensionStatus': SuspensionStatus.NOT_SUSPENDED,
'enrollmentStatus': EnrollmentStatus.INTERESTED
}
common_args.update(kwargs)
return ParticipantSummary(**common_args)
def setUp(self):
super(BigQuerySyncDaoTest, self).setUp(use_mysql=True,
with_consent_codes=True)
self.dao = ParticipantDao()
with self.dao.session() as session:
self.site = session.query(Site).filter(
Site.googleGroup == 'hpo-site-monroeville').first()
self.hpo = session.query(HPO).filter(HPO.name == 'PITT').first()
with clock.FakeClock(self.TIME_1):
self.participant = Participant(participantId=123, biobankId=555)
self.participant.hpoId = self.hpo.hpoId
self.participant.siteId = self.site.siteId
self.dao.insert(self.participant)
ps = ParticipantSummary(
participantId=123,
biobankId=555,
firstName='john',
lastName='doe',
withdrawalStatus=WithdrawalStatus.NOT_WITHDRAWN,
suspensionStatus=SuspensionStatus.NOT_SUSPENDED)
ps.hpoId = self.hpo.hpoId
ps.siteId = self.site.siteId
self.summary = ParticipantSummaryDao().insert(ps)
self.pm_json = json.dumps(
load_measurement_json(self.participant.participantId,
self.TIME_1.isoformat()))
self.pm = PhysicalMeasurementsDao().insert(
self._make_physical_measurements())
with clock.FakeClock(self.TIME_2):
self.dao = BiobankOrderDao()
self.bio_order = BiobankOrderDao().insert(
self._make_biobank_order(
participantId=self.participant.participantId))
def create_summary_for_participant(obj):
return ParticipantSummary(
participantId=obj.participantId,
lastModified=obj.lastModified,
biobankId=obj.biobankId,
signUpTime=obj.signUpTime,
hpoId=obj.hpoId,
organizationId=obj.organizationId,
siteId=obj.siteId,
withdrawalStatus=obj.withdrawalStatus,
withdrawalReason=obj.withdrawalReason,
withdrawalReasonJustification=obj.withdrawalReasonJustification,
suspensionStatus=obj.suspensionStatus,
enrollmentStatus=EnrollmentStatus.INTERESTED)
def setUp(self):
super(ParticipantCountsOverTimeApiTest, self).setUp(use_mysql=True)
self.dao = ParticipantDao()
self.ps_dao = ParticipantSummaryDao()
self.ps = ParticipantSummary()
self.calendar_dao = CalendarDao()
self.hpo_dao = HPODao()
# Needed by ParticipantCountsOverTimeApi
self.hpo_dao.insert(HPO(hpoId=TEST_HPO_ID, name=TEST_HPO_NAME, displayName='Test',
organizationType=OrganizationType.UNSET))
self.time1 = datetime.datetime(2017, 12, 31)
self.time2 = datetime.datetime(2018, 1, 1)
self.time3 = datetime.datetime(2018, 1, 2)
self.time4 = datetime.datetime(2018, 1, 3)
# Insert 2 weeks of dates
curr_date = datetime.date(2017, 12, 22)
for _ in xrange(0, 14):
calendar_day = Calendar(day=curr_date )
CalendarDao().insert(calendar_day)
curr_date = curr_date + datetime.timedelta(days=1)