def train():
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
json_file = open("parameters.json")
parameters = json.load(json_file)
json_file.close()
net = CNNModel(1, 10)
optimizer = torch.optim.Adam(net.parameters(), lr=parameters["lr"])
criterion = nn.BCELoss()
if torch.cuda.is_available():
net = torch.nn.DataParallel(net,
device_ids=range(
torch.cuda.device_count())).cuda()
cudnn.benchmark = True
ecg_dataset = EcgDataset(is_train=True)
train_loader = torch.utils.data.DataLoader(dataset=ecg_dataset,
batch_size=10)
for epoch in range(parameters["num_epochs"]):
net.train()
for i, (data, label) in enumerate(train_loader):
data, label = data.to(device), label.to(device)
output = net(data)
optimizer.zero_grad()
loss = criterion(output, label)
loss.backward()
optimizer.step()
print('Epoch [{}/{}], Loss: {:.4f}'.format(epoch + 1,
parameters["num_epochs"],
loss.item()))
evaluation(net)
def run(args):
train_loader = torch.utils.data.DataLoader(
datasets.ImageFolder('../../ssl_data_96/supervised/train',
transform=data_transforms),
batch_size=args.batch_size,
shuffle=True,
num_workers=4) #n_worker to 4, to use 4 gpu
val_loader = torch.utils.data.DataLoader(
datasets.ImageFolder('../../ssl_data_96/supervised/val',
transform=validation_data_transforms),
batch_size=args.batch_size,
shuffle=False,
num_workers=4) #n_worker to 4, to use 4 gpu
model = CNNModel()
model.cuda()
optimizer = optim.RMSprop(model.parameters(),
lr=args.lr,
momentum=args.momentum,
weight_decay=1e-3)
scheduler = optim.lr_scheduler.StepLR(optimizer, step_size=5)
for epoch in range(1, args.epochs + 1):
scheduler.step()
train(epoch, model, optimizer, train_loader, args.log_interval)
validation(epoch, model, val_loader)
model_file = 'model_' + str(epoch) + '.pth'
torch.save(model.state_dict(), model_file)
writer.close()
def run(args):
train_loader = torch.utils.data.DataLoader(datasets.ImageFolder(
args.data + '/train', transform=data_transforms),
batch_size=args.batch_size,
shuffle=True,
num_workers=16)
val_loader = torch.utils.data.DataLoader(datasets.ImageFolder(
args.data + '/val', transform=validation_data_transforms),
batch_size=args.batch_size,
shuffle=False,
num_workers=16)
model = CNNModel()
model = nn.DataParallel(model)
model = model.to(args.device)
if args.checkpoint is not None:
model.load_state_dict(torch.load(args.checkpoint))
optimizer = optim.Adam(model.parameters(), lr=args.lr, weight_decay=1e-3)
scheduler = optim.lr_scheduler.StepLR(optimizer, step_size=args.step_size)
for epoch in range(1, args.epochs + 1):
scheduler.step()
train(epoch, model, optimizer, train_loader, args.log_interval)
validation(epoch, model, val_loader)
model_file = 'model_' + str(epoch) + '.pth'
torch.save(model.state_dict(), model_file)
writer.close()
def main_simple_cnn():
TEXT = data.Field(sequential=True, include_lengths=True)
LABEL = data.Field(sequential=False)
train, val, test = datasets.SNLI.splits(TEXT, LABEL)
TEXT.build_vocab(train, vectors="glove.840B.300d")
LABEL.build_vocab(train)
vocab = TEXT.vocab
train_iter, val_iter, test_iter = data.Iterator.splits(
(train, val, test),
batch_size=50,
repeat=True,
shuffle=False)
config = Config()
criterion = nn.CrossEntropyLoss()
model = CNNModel(vocab, config)
# model = Model(vocab, config)
if args.cuda:
model.cuda()
optimizer = optim.Adam([param for param in model.parameters() if param.requires_grad], lr=1e-3)
for epoch in range(args.max_epoch):
train_acc = 0.0
train_cnt = 0
for batch in train_iter:
x, y = batch, batch.label - 1
f_x = model(x)
acc = (f_x.max(1)[1] == y).type(torch.FloatTensor).mean().float()
loss = criterion(f_x, y)
model.zero_grad()
loss.backward()
optimizer.step()
if train_cnt % 100 == 0:
print 'cnt = {}, acc = {}, loss = {}'.format(train_cnt, acc, loss.float())
train_cnt += 1
train_acc += acc
test_acc = 0.0
test_cnt = 0
for batch in test_iter:
x, y = batch, batch.label - 1
f_x = model(x)
test_acc += (f_x.max(1)[1] == y).type(torch.FloatTensor).mean().float()
test_cnt += 1
print 'epoch = {}, train_acc = {}, test_acc = {}'.format(epoch, train_acc / train_cnt, test_acc / test_cnt)
def train(train_config):
use_cuda = train_config.num_gpus > 0
if use_cuda:
torch.cuda.manual_seed(train_config.num_gpus)
logger.info("Number of GPUs available: {}".format(train_config.num_gpus))
device = torch.device('cuda' if use_cuda else 'cpu')
model = CNNModel().to(device)
optimizer = optim.Adam(model.parameters(), lr=train_config.lr)
best_train_loss = 0
for epoch in range(1, train_config.num_epochs + 1):
model.train()
train_loss = 0
for batch_idx, sample_batch in enumerate(train_loader):
pdb = sample_batch['pdb']
x = sample_batch['pocket']
y_true = sample_batch['label']
x, y_true = x.to(device), y_true.to(device)
x, y_true = Variable(x), Variable(y_true)
optimizer.zero_grad()
output = model(x)
loss = F.mse_loss(output, y_true)
train_loss += loss.data[0]
loss.backward()
optimizer.step()
if batch_idx % train_config.log_train_freq == 0:
logger.info("Train epoch: {}, Loss: {:.06f}"
.format(epoch, loss.data[0]))
if train_loss < best_train_loss:
utils.save_model(model, train_config.model_dir, logger)
'mnist_m_train'),
data_list=train_list,
transform=img_transform_target)
dataloader_target = torch.utils.data.DataLoader(dataset=dataset_target,
batch_size=batch_size,
shuffle=True,
num_workers=8)
# load model
my_net = CNNModel()
# setup optimizer
optimizer = optim.Adam(my_net.parameters(), lr=lr)
loss_class = torch.nn.NLLLoss()
loss_domain = torch.nn.NLLLoss()
if cuda:
my_net = my_net.cuda()
loss_class = loss_class.cuda()
loss_domain = loss_domain.cuda()
for p in my_net.parameters():
p.requires_grad = True
# training
best_accu_s = 0.0
for epoch in range(n_epoch):
# model_ft = model_ft.to(device)
model_conv = models.resnet18(pretrained=True)
model_conv.avgpool = nn.AdaptiveAvgPool2d(output_size=(1, 1))
for p in model_conv.parameters():
p.requires_grad = True
model_conv = nn.Sequential(*list(model_conv.children())[:-1])
model_conv = model_conv.cuda()
criterion_1 = nn.CrossEntropyLoss()
criterion_2 = nn.CrossEntropyLoss()
my_model = CNNModel()
my_model = my_model.cuda()
# Observe that all parameters are being optimized
optimizer_ft = optim.Adam(my_model.parameters(), lr=0.1, weight_decay=1e-1)
# Decay LR by a factor of 0.1 every 7 epochs
exp_lr_scheduler = lr_scheduler.StepLR(optimizer_ft, step_size=7, gamma=0.1)
model_ft = train_model(my_model,
criterion_1,
criterion_2,
optimizer_ft,
exp_lr_scheduler,
num_epochs=50,
alpha=-1)
# visualize_model(model_ft)
# Set dataloader
train_loader = DataLoader(dataset=TensorDataset(torch.FloatTensor(x_train),
torch.LongTensor(y_train)),
batch_size=batch_size,
shuffle=True,
num_workers=4)
valid_loader = DataLoader(dataset=TensorDataset(torch.FloatTensor(x_valid),
torch.LongTensor(y_valid)),
batch_size=batch_size,
shuffle=False,
num_workers=4)
print('Initial CNN model.')
model = CNNModel(input_dim, output_dim).cuda()
optimizer = torch.optim.Adam(model.parameters(), lr=0.001)
loss_func = torch.nn.CrossEntropyLoss()
print('Start training.')
best_ed = 999
early_stop_cnt = 0
for epoch in range(1, epochs + 1):
print('Epoch: {}/{}'.format(epoch, epochs))
total_loss, total_acc, nonzeros = 0, 0, 0
widgets = [
FormatLabel(''), ' ',
def main(args):
cuda = True
cudnn.benchmark = True
# data_root = '/home/weiyuhua/Challenge2020/Data/DG'
data_root = '/home/yin/code/weiyuhua/Challenge2020/Data/DG'
model_root = args.model_root
logs = args.logs
lr = args.lr
batch_size = args.batch_size
n_epoch = args.n_epoch
unseen_index = args.unseen_index
val_split = args.val_split
manual_seed = random.randint(1, 10000)
random.seed(manual_seed)
torch.manual_seed(manual_seed)
tb_dir = os.path.join(logs, 'tb_dir')
if not os.path.exists(logs):
os.makedirs(logs)
if not os.path.exists(model_root):
os.makedirs(model_root)
if not os.path.exists(tb_dir):
os.makedirs(tb_dir)
# Tensorboard
train_writer = SummaryWriter(tb_dir + '/train')
val_writer = SummaryWriter(tb_dir + '/valid')
test_writer = SummaryWriter(tb_dir + '/test')
# get train, val and test datasets
D = GetDataset(data_root, unseen_index, val_split)
train_datasets, val_datasets, test_dataset = D.get_datasets()
# get dataloaders
train_dataloaders = []
for train_dataset in train_datasets:
train_dataloader = DataLoader(dataset=train_dataset,
batch_size=batch_size,
shuffle=True,
num_workers=8)
train_dataloaders.append(train_dataloader)
val_dataloaders = []
for val_dataset in val_datasets:
val_dataloader = DataLoader(dataset=val_dataset,
batch_size=batch_size,
shuffle=False,
num_workers=8)
val_dataloaders.append(val_dataloader)
test_dataloader = DataLoader(dataset=test_dataset,
batch_size=batch_size,
shuffle=False,
num_workers=8)
# load model
my_net = CNNModel()
# setup optimizer
optimizer = optim.Adam(my_net.parameters(), lr=lr)
loss_class = torch.nn.NLLLoss()
loss_domain = torch.nn.NLLLoss()
if cuda:
my_net = my_net.cuda()
loss_class = loss_class.cuda()
loss_domain = loss_domain.cuda()
for p in my_net.parameters():
p.requires_grad = True
# training
best_accu_val = 0.0
for epoch in range(n_epoch):
len_dataloader = np.min(
np.array([
len(train_dataloaders[i])
for i in range(len(train_dataloaders))
]))
data_train_iters = []
for train_dataloader in train_dataloaders:
data_train_iter = iter(train_dataloader)
data_train_iters.append(data_train_iter)
for i in range(len_dataloader):
p = float(i + epoch * len_dataloader) / n_epoch / len_dataloader
alpha = 2. / (1. + np.exp(-10 * p)) - 1
err_label_s = []
err_domain_s = []
# err_label_all = torch.tensor(0.0)
# err_domain_all = torch.tensor(0.0)
err_label_all = 0
err_domain_all = 0
# training model using multi-source data
for j, data_train_iter in enumerate(data_train_iters):
data_train = data_train_iter.next()
s_ecg, s_label = data_train
my_net.zero_grad()
batch_size = len(s_label)
domain_label = (torch.ones(batch_size) * j).long()
if cuda:
s_ecg = s_ecg.cuda()
s_label = s_label.cuda()
domain_label = domain_label.cuda()
class_output, domain_output = my_net(input_data=s_ecg,
alpha=alpha)
err_label = loss_class(class_output, s_label)
err_domain = loss_domain(domain_output, domain_label)
err_label_s.append(err_label.data.cpu().numpy())
err_domain_s.append(err_domain.data.cpu().numpy())
err_label_all += err_label
err_domain_all += err_domain
# err = err_domain_all + err_label_all
err = err_label_all
err.backward()
optimizer.step()
print('\n')
for j in range(len(train_dataloaders)):
print('\r epoch: %d, [iter: %d / all %d], domain: %d, err_label: %f, err_domain: %f' \
% (epoch, i + 1, len_dataloader, j + 1, err_label_s[j], err_domain_s[j]))
# tb training
train_writer.add_scalar('err_label_%d' % (j), err_label_s[j])
train_writer.add_scalar('err_domain_%d' % (j), err_domain_s[j])
torch.save(my_net,
'{0}/model_epoch_current.pth'.format(model_root))
print('\n')
## validation
val_accus, best_accu_val, val_err_label_s, val_err_domain_s = valid(
val_dataloaders, model_root, best_accu_val)
for i in range(len(val_dataloaders)):
print('\r epoch: %d, Validation, domain: %d, accu: %f' %
(epoch, i + 1, val_accus[i]))
# tb validation
val_writer.add_scalar('err_label_%d' % (i), val_err_label_s[i])
val_writer.add_scalar('err_domain_%d' % (i), val_err_domain_s[i])
val_writer.add_scalar('accu_%d' % (i), val_accus[i])
## test
test_accu, test_err_label = test(test_dataloader,
model_root,
model_best=False)
test_writer.add_scalar('accu', test_accu)
test_writer.add_scalar('err_label', test_err_label)
result_path = os.path.join(logs, 'results.txt')
print('============ Summary ============= \n')
for i, train_dataloader in enumerate(train_dataloaders):
train_accu, train_err_label = test(train_dataloader, model_root)
write_log(
'Accuracy of the train dataset %d : %f err_label : %f' %
(i + 1, train_accu, train_err_label), result_path)
for i, val_dataloader in enumerate(val_dataloaders):
val_accu, val_err_label = test(val_dataloader, model_root)
write_log(
'Accuracy of the val dataset %d : %f err_label : %f' %
(i + 1, val_accu, val_err_label), result_path)
test_accu, test_err_label = test(test_dataloader, model_root)
write_log(
'Accuracy of the test dataset %d : %f err_label : %f' %
(i + 1, test_accu, test_err_label), result_path)
from torch.utils.data import DataLoader
from local_config import *
from model import CNNModel
from evaluate import evaluate
from data_helper import trainset, devset, testset, word_vectors, word2id, rel2id
if __name__ == "__main__":
train_loader = DataLoader(trainset, shuffle=True, batch_size=BATCH_SIZE)
dev_loader = DataLoader(devset, shuffle=False, batch_size=BATCH_SIZE)
test_loader = DataLoader(testset, shuffle=False, batch_size=BATCH_SIZE)
model = CNNModel(torch.tensor(word_vectors, dtype=torch.float32), rel2id)
optimizer = optim.Adam(model.parameters(), lr=LEARNING_RATE)
criterion = nn.CrossEntropyLoss()
model.to(DEVICE)
criterion.to(DEVICE)
best_f1_micro = 0.0
waste_epoch = 0
for epoch in range(EPOCH):
running_loss = 0.0
for i, data in enumerate(train_loader):
model.train()
tokens, pos1, pos2, label = data
tokens = tokens.to(DEVICE)
pos1 = pos1.to(DEVICE)
shuffle=True,
num_workers = 3)
valid_dataset = torch.utils.data.TensorDataset(
valid_data,
valid_label)
valid_loader = torch.utils.data.DataLoader(
dataset = valid_dataset,
batch_size = 512,
shuffle = True,
num_workers = 3
)
model = CNNModel().cuda()
#model.load_state_dict(torch.load('models/model.pth'))
optimizer = optim.Adam(model.parameters(), lr = 1e-5)
best = []
W = []
for epoch in range(10):
model.train()
for step, (batch_x, batch_y) in enumerate(loader):
data = batch_x.unsqueeze(1)
# data = batch_x.unsqueeze(2)#bs, seq, 1 LSTM MODEL UNCOMMENT THIS
data = (data-torch.mean(data, dim=2, keepdim=True))/torch.std(data, dim=2, keepdim=True)
# target = batch_y.unsqueeze(2).cuda() LSTM MODEL UNCOMMENT THIS
target = batch_y.cuda() # LSTML MODEL COMMENT THIS
data = data.cuda()
target = target.cuda()
pred = model(data)
lossB = torch.abs(pred - target).mean()
def train_dann(dataset_source, dataset_target, n_epoch, batch_size, in_dim,
h_dims, out_dim, ckpt_save_path):
lr = 1e-3
l_d = 0.1
dataloader_source = torch.utils.data.DataLoader(
dataset=dataset_source,
batch_size=batch_size,
shuffle=True,
)
dataloader_target = torch.utils.data.DataLoader(
dataset=dataset_target,
batch_size=batch_size,
shuffle=True,
)
model = CNNModel(in_dim, h_dims, out_dim)
optimizer = torch.optim.Adam(model.parameters(), lr=lr)
loss_class = torch.nn.CrossEntropyLoss()
loss_domain = torch.nn.CrossEntropyLoss()
if cuda:
model = model.cuda()
loss_class = loss_class.cuda()
loss_domain = loss_domain.cuda()
for p in model.parameters():
p.requires_grad = True
# training
best_acc = 0.0
best_ep = 0
tr_acc_ls = []
te_acc_ls = []
loss_ls = []
for epoch in range(n_epoch):
model.train()
len_dataloader = min(len(dataloader_source), len(dataloader_target))
data_source_iter = iter(dataloader_source)
data_target_iter = iter(dataloader_target)
loss_sum = 0.0
n_s = 0
for i in range(len_dataloader):
# Compute reverse layer parameter alpha
p = float(i + epoch * len_dataloader) / n_epoch / len_dataloader
alpha = 2. / (1. + np.exp(-10 * p)) - 1
# training model using source data
data_s, label_s = data_source_iter.next()
batch_size_s = len(label_s)
n_s += batch_size_s
domain_label = torch.zeros(batch_size_s).long()
if cuda:
data_s = data_s.cuda()
label_s = label_s.cuda()
domain_label = domain_label.cuda()
class_output, domain_output = model(input_data=data_s, alpha=alpha)
loss_c = loss_class(class_output, label_s)
loss_ds = loss_domain(domain_output, domain_label)
# training model using target data
data_t, _ = data_target_iter.next()
batch_size_t = len(data_t)
domain_label = torch.ones(batch_size_t).long()
if cuda:
data_t = data_t.cuda()
domain_label = domain_label.cuda()
_, domain_output = model(input_data=data_t, alpha=alpha)
loss_dt = loss_domain(domain_output, domain_label)
# Compute overall loss and backprop
loss = loss_c + l_d * (loss_dt + loss_ds)
loss_sum += loss.item() * batch_size_s
model.zero_grad()
loss.backward()
optimizer.step()
# logger.info('epoch: {:>4}, [iter: {:>4} / all {:>4}], loss {:8.4f}, '
# 'loss_c: {:8.4f}, loss_ds: {:8.4f}, loss_dt: {:8.4f}\n'
# .format(epoch, i+1, len_dataloader, loss.item(), loss_c.item(), loss_ds.item(), loss_dt.item()))
tr_acc, tr_f1 = evaluate_dann(model, dataset_source, batch_size)
te_acc, te_f1 = evaluate_dann(model, dataset_target, batch_size)
tr_acc_ls.append(tr_acc)
te_acc_ls.append(te_acc)
loss_ls.append(loss_sum)
# If find a better result, save the model
if te_acc > best_acc:
best_acc = te_acc
best_ep = epoch
checkpoint = {"epoch": epoch, "state_dict": model.state_dict()}
torch.save(checkpoint, ckpt_save_path + '.ckpt')
logger.info(
'epoch: {:>4}, loss: {:8.4f}, train acc: {:8.4f}, train f1: {:8.4f},'
' eval acc: {:8.4f}, eval f1: {:8.4f}'.format(
epoch, loss_sum, tr_acc, tr_f1, te_acc, te_f1))
logger.info('=' * 10)
logger.info('best epoch: {:>4}, best acc: {:8.4f}'.format(
best_ep, best_acc))
pickle.dump(tr_acc_ls, open(ckpt_save_path + '.tracc', 'wb'))
pickle.dump(te_acc_ls, open(ckpt_save_path + '.teacc', 'wb'))
pickle.dump(loss_ls, open(ckpt_save_path + '.loss', 'wb'))
def train(source, target):
source_dataset_name = 'source'
target_dataset_name = 'target'
model_root = 'models'
cuda = True
cudnn.benchmark = True
manual_seed = random.randint(1, 10000)
random.seed(manual_seed)
torch.manual_seed(manual_seed)
# load model
my_net = CNNModel()
# setup optimizer
optimizer = optim.Adam(my_net.parameters(), lr=lr)
loss_class = torch.nn.CrossEntropyLoss()
# torch.nn.AdaptiveLogSoftmaxWithLoss
loss_domain = torch.nn.CrossEntropyLoss()
if cuda:
my_net = my_net.cuda()
loss_class = loss_class.cuda()
loss_domain = loss_domain.cuda()
for p in my_net.parameters():
p.requires_grad = True
# training
best_accu_t = 0.0
for epoch in range(n_epoch):
len_dataloader = min(len(source), len(target))
data_source_iter = iter(source)
data_target_iter = iter(target)
for i in range(len_dataloader):
p = float(i + epoch * len_dataloader) / n_epoch / len_dataloader
alpha = 2. / (1. + np.exp(-10 * p)) - 1
# training model using source data
data_source = data_source_iter.next()
s_img, s_label = data_source
s_label = s_label.long()
my_net.zero_grad()
batch_size = len(s_label)
domain_label = torch.zeros(batch_size).long()
if cuda:
s_img = s_img.cuda()
s_label = s_label.cuda()
domain_label = domain_label.cuda()
class_output, domain_output = my_net(input_data=s_img, alpha=alpha)
err_s_label = loss_class(class_output, s_label)
err_s_domain = loss_domain(domain_output, domain_label)
# training model using target data
data_target = data_target_iter.next()
t_img, _ = data_target
batch_size = len(t_img)
domain_label = torch.ones(batch_size).long()
if cuda:
t_img = t_img.cuda()
domain_label = domain_label.cuda()
_, domain_output = my_net(input_data=t_img, alpha=alpha)
err_t_domain = loss_domain(domain_output, domain_label)
# print(err_t_domain, err_s_domain)
err = mu * (err_t_domain + err_s_domain) + err_s_label
err.backward()
optimizer.step()
# sys.stdout.write('\r epoch: %d, [iter: %d / all %d], err_s_label: %f, err_s_domain: %f, err_t_domain: %f' \
# % (epoch, i + 1, len_dataloader, err_s_label.data.cpu().numpy(),
# err_s_domain.data.cpu().numpy(), err_t_domain.data.cpu().item()))
# sys.stdout.flush()
torch.save(my_net, '{0}/SEED_current.pth'.format(model_root))
# print('\n')
accu_s = mytest(source_dataset_name)
# print('Accuracy of the %s dataset: %f' % ('source', accu_s))
accu_t = mytest(target_dataset_name)
# print('Accuracy of the %s dataset: %f\n' % ('target', accu_t))
if accu_t > best_accu_t:
best_accu_s = accu_s
best_accu_t = accu_t
torch.save(my_net, '{0}/SEED_best.pth'.format(model_root))
print('============ Summary ============= \n')
print('Accuracy of the %s dataset: %f' % ('source', best_accu_s))
print('Accuracy of the %s dataset: %f' % ('target', best_accu_t))
print('Corresponding model was save in ' + model_root + '/SEED_best.pth')
accu_test = mytest("target")
print('============ Test ============= \n')
print('Accuracy of the %s dataset: %f\n' % ('test', accu_test))
return accu_test
batch_size=batch_size,
use_cache=False)
dataloader_target_train = DataLoader(dataset=dataset_target_train,
batch_size=batch_size,
shuffle=True,
num_workers=2)
dataloader_target_valid = DataLoader(dataset=dataset_target_valid,
batch_size=batch_size,
shuffle=True,
num_workers=2)
# load model
model = CNNModel()
# setup optimizer
optimizer = optim.Adam(model.parameters(), lr=lr)
loss_class = torch.nn.CrossEntropyLoss()
loss_domain = torch.nn.CrossEntropyLoss()
if cuda:
model = model.cuda()
loss_class = loss_class.cuda()
loss_domain = loss_domain.cuda()
for p in model.parameters():
p.requires_grad = True
# training
best_accu_s = 0.
best_accu_t = 0.
