def genAnalysis(modelfile,testfile,outputfile):
maxParagraphLength = 20
maxParagraphs = 5
filterSizes = [1]
num_filters = 64
wordEmbeddingDimension = 30
lrate = float(1e-3)
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs,maxParagraphLength,labels,vocabularySize,filterSizes,num_filters,wordEmbeddingDimension,lrate)
testing = DataParser(maxParagraphs,maxParagraphLength,labels,vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
batchSize = 1
testing.restore()
truePre=[]
pred=[]
for itr in range(testing.totalPages):
data=testing.nextBatch(1)
truePre.append(data[0])
pre=model.predict(data)
pred.append(pre[0])
labelIDName = open("../labelId-labelName-full.txt").read().split("\n")
labelIDName = [ [ int(x.split("\t")[0]) , x.split("\t")[1].rstrip() ] for x in labelIDName]
# print(labelIDName)
#making it a dictionary
labelName = dict(labelIDName)
# print(labelName[9026])
f = open(outputfile,"w")
for i,v in enumerate(pred):
temp = [(labId,labProb) for labId,labProb in enumerate(v) ]
temp = sorted(temp,key=lambda x:x[1],reverse=True) #sorting based on label probability to get top k
predLabel = [0]*len(temp)
output = ""
for itr in range(11):
predLabel[temp[itr][0]] = 1
if truePre[i][0][temp[itr][0]] == 1:
output = output + "," + labelName[temp[itr][0]]
f.write(str(i) + "," + output + "\n")
f.close()
def analyse(modelfile,testfile,outputfile):
maxParagraphLength = 20
maxParagraphs = 10
filterSizes = [2,3,4]
num_filters = 64
wordEmbeddingDimension = 100
lrate = float(0.001)
poolLength = 2
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs,maxParagraphLength,labels,vocabularySize,\
filterSizes,num_filters,wordEmbeddingDimension,lrate,poolLength)
testing = DataParser(maxParagraphs,maxParagraphLength,labels,vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
batchSize = 1
testing.restore()
truePre=[]
pred=[]
for itr in range(testing.totalPages):
data=testing.nextBatch(1)
truePre.append(data[0])
pre=model.predict(data)
pred.append(pre[0])
labelids = open("../../dataset/sorted_labelid_sans5toplabels.txt","r").read().strip().split("\n")
labelids = [ int(x) for x in labelids ]
no_of_partition = 10
partition_size = labels / no_of_partition
rank1 = [0]*no_of_partition
rank3 = [0]*no_of_partition
rank5 = [0]*no_of_partition
for i,v in enumerate(pred):
temp = [(labId,labProb) for labId,labProb in enumerate(v) ]
temp = sorted(temp,key=lambda x:x[1],reverse=True) #sorting based on label probability to get top k
rank1[ labelids.index( temp[0][0] ) / partition_size ] += 1
rank3[ labelids.index( temp[0][0] ) / partition_size ] += 1
rank5[ labelids.index( temp[0][0] ) / partition_size ] += 1
rank3[ labelids.index( temp[1][0] ) / partition_size ] += 1
rank5[ labelids.index( temp[1][0] ) / partition_size ] += 1
rank3[ labelids.index( temp[2][0] ) / partition_size ] += 1
rank5[ labelids.index( temp[2][0] ) / partition_size ] += 1
rank5[ labelids.index( temp[3][0] ) / partition_size ] += 1
rank5[ labelids.index( temp[4][0] ) / partition_size ] += 1
rank1 = [ ( float(x) /testing.totalPages )*100 for x in rank1 ]
rank3 = [ ( float(x) /( 3 * testing.totalPages) )*100 for x in rank3 ]
rank5 = [ ( float(x) /( 5 * testing.totalPages) )*100 for x in rank5 ]
print( rank1)
print( rank3)
print(rank5)
filePtr = open( outputfile , "w")
for i in rank1:
filePtr.write( str(i) + "," )
filePtr.write("\n")
for i in rank3:
filePtr.write( str(i) + "," )
filePtr.write("\n")
for i in rank5:
filePtr.write( str(i) + "," )
filePtr.close()
def analyse(modelfile, testfile, outputfile):
maxParagraphLength = 20
maxParagraphs = 10
filterSizes = [2, 3, 4]
num_filters = 64
wordEmbeddingDimension = 100
lrate = float(0.001)
poolLength = 2
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs,maxParagraphLength,labels,vocabularySize,\
filterSizes,num_filters,wordEmbeddingDimension,lrate,poolLength)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
batchSize = 1
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
labelids = open("../../dataset/labelid_labelcount_sans5toplabels.txt",
"r").read().strip().split("\n")
labelcounts = [int((x.split("\t"))[1]) for x in labelids]
print labelcounts
totalNoofDocuments = 19406 # 6137 (test instances ) +
rangelist = [
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100
]
no_of_partition = len(rangelist)
rank1 = [0] * no_of_partition
rank3 = [0] * no_of_partition
rank5 = [0] * no_of_partition
for i, v in enumerate(pred):
temp = [(labId, labProb) for labId, labProb in enumerate(v)]
temp = sorted(
temp, key=lambda x: x[1],
reverse=True) #sorting based on label probability to get top k
for ind, count in enumerate(rangelist):
if labelcounts[temp[0][0]] <= (count * totalNoofDocuments) / 100:
rank1[ind] += 1
rank3[ind] += 1
rank5[ind] += 1
if labelcounts[temp[1][0]] <= (count * totalNoofDocuments) / 100:
rank3[ind] += 1
rank5[ind] += 1
if labelcounts[temp[2][0]] <= (count * totalNoofDocuments) / 100:
rank3[ind] += 1
rank5[ind] += 1
if labelcounts[temp[3][0]] <= (count * totalNoofDocuments) / 100:
rank5[ind] += 1
if labelcounts[temp[4][0]] <= (count * totalNoofDocuments) / 100:
rank5[ind] += 1
rank1 = [(float(x) / testing.totalPages) * 100 for x in rank1]
rank3 = [(float(x) / (3 * testing.totalPages)) * 100 for x in rank3]
rank5 = [(float(x) / (5 * testing.totalPages)) * 100 for x in rank5]
print(rank1)
print(rank3)
print(rank5)
filePtr = open(outputfile, "w")
for i in rank1:
filePtr.write(str(i) + ",")
filePtr.write("\n")
for i in rank3:
filePtr.write(str(i) + ",")
filePtr.write("\n")
for i in rank5:
filePtr.write(str(i) + ",")
filePtr.close()
paragraphLength = int(sys.argv[1])
maxParagraphs = int(sys.argv[2] )
filterSizes = [int(i) for i in sys.argv[3].split("-")]
print(filterSizes)
num_filters = int(sys.argv[4])
wordEmbeddingDimension = int(sys.argv[5])
batchSize= int(sys.argv[6])
epochEnd = int(sys.argv[7])
folder_name = sys.argv[8]
nlabels = 8
vocabularySize = 244
training = DataParser(maxParagraphs,paragraphLength,nlabels,vocabularySize)
training.getDataFromfile("../../Reuter_dataset/reuters_sparse_training.txt")
model = Model(maxParagraphs,paragraphLength,nlabels,vocabularySize,filterSizes,num_filters,wordEmbeddingDimension)
costfile = open("results/costfile.txt","a")
output = folder_name
epoch=0
# epochEnd=400
costepochs = []
for e in range(epoch,epochEnd):
cost=0
for itr in range(int(training.totalPages/batchSize)):
cost += model.train(training.nextBatch(batchSize))
def ComputeFscore(modelfile, testfile, outputfile):
maxParagraphLength = int(sys.argv[1])
maxParagraphs = int(sys.argv[2])
filterSizes = [int(i) for i in sys.argv[3].split("-")]
num_filters = int(sys.argv[4])
wordEmbeddingDimension = int(sys.argv[5])
# batchSize= int(sys.argv[6])
# epochs= int(sys.argv[7])
# folder_name = sys.argv[8]
labels = 8
vocabularySize = 244
model = Model(maxParagraphs, maxParagraphLength, labels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
labelsCount = {}
ConfusionMa = {}
fScr = {}
thres = 0.5
valid = int(
len(truePre) * 0.5
) #using first 50% data for threshold tuning - we have merged test and cv files
labelsCount = {}
ConfusionMa = {}
fScr = {}
thresLab = {}
for la in range(labels):
if la % 25 == 0:
print("Current label", la)
t = []
p = []
for i in range(valid):
t.append(truePre[i][0][la])
p.append(pred[i][la])
bestF, bestThre = thresholdTuning(t, p)
t = []
p = []
for i in range(valid, len(truePre)):
t.append(truePre[i][0][la])
p.append(pred[i][la])
p = np.array(p)
fScr[la] = f1_score(t, p >= bestThre)
ConfusionMa[la] = confusion_matrix(t, p > bestThre)
thresLab[la] = bestThre
f = open(outputfile, "a")
output = sys.argv[9]
sum_fscore = 0.0
for i in range(labels):
sum_fscore = sum_fscore + fScr[i]
output = output + " , " + str(fScr[i])
output += " , " + str(sum_fscore / float(labels - 1))
print("Fscore at " + sys.argv[7] + " epochs: " +
str(sum_fscore / float(labels - 1)))
f.write(output + "\n")
f.close()
def ComputePrecisionK(modelfile, testfile, outputfile):
maxParagraphLength = int(sys.argv[1])
maxParagraphs = int(sys.argv[2])
filterSizes = [int(i) for i in sys.argv[3].split("-")]
num_filters = int(sys.argv[4])
wordEmbeddingDimension = int(sys.argv[5])
lrate = float(sys.argv[10])
poolLength = int(sys.argv[11])
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs, maxParagraphLength, labels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension, lrate,
poolLength)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
print("Computing Prec@k")
#check if batchsize needs to be taken by parameter
batchSize = 1
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
k = 5
for i in [1, 3, 5]:
val = ndcg_score(truePre, pred, i)
print(val)
def dcg_score(y_true, y_score, k=5):
"""Discounted cumulative gain (DCG) at rank K.
Parameters
----------
y_true : array, shape = [n_samples]
Ground truth (true relevance labels).
y_score : array, shape = [n_samples, n_classes]
Predicted scores.
k : int
Rank.
Returns
-------
score : float
"""
order = np.argsort(y_score)[::-1]
y_true = np.take(y_true, order[:k])
gain = 2**y_true - 1
discounts = np.log2(np.arange(len(y_true)) + 2)
return np.sum(gain / discounts)
def ndcg_score(ground_truth, predictions, k=5):
"""Normalized discounted cumulative gain (NDCG) at rank K.
Normalized Discounted Cumulative Gain (NDCG) measures the performance of a
recommendation system based on the graded relevance of the recommended
entities. It varies from 0.0 to 1.0, with 1.0 representing the ideal
ranking of the entities.
Parameters
----------
ground_truth : array, shape = [n_samples]
Ground truth (true labels represended as integers).
predictions : array, shape = [n_samples, n_classes]
Predicted probabilities.
k : int
Rank.
Returns
-------
score : float
Example
-------
>>> ground_truth = [1, 0, 2]
>>> predictions = [[0.15, 0.55, 0.2], [0.7, 0.2, 0.1], [0.06, 0.04, 0.9]]
>>> score = ndcg_score(ground_truth, predictions, k=2)
1.0
>>> predictions = [[0.9, 0.5, 0.8], [0.7, 0.2, 0.1], [0.06, 0.04, 0.9]]
>>> score = ndcg_score(ground_truth, predictions, k=2)
0.6666666666
"""
lb = LabelBinarizer()
lb.fit(range(len(predictions) + 1))
T = lb.transform(ground_truth)
scores = []
# Iterate over each y_true and compute the DCG score
for y_true, y_score in zip(T, predictions):
actual = dcg_score(y_true, y_score, k)
best = dcg_score(y_true, y_true, k)
score = float(actual) / float(best)
scores.append(score)
return np.mean(scores)
def ComputePrecisionK(modelfile, testfile, outputfile):
maxParagraphLength = int(sys.argv[1])
maxParagraphs = int(sys.argv[2])
filterSizes = [int(i) for i in sys.argv[3].split("-")]
num_filters = int(sys.argv[4])
wordEmbeddingDimension = int(sys.argv[5])
lrate = float(sys.argv[10])
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs, maxParagraphLength, labels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension, lrate)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
print("Computing Prec@k")
#check if batchsize needs to be taken by parameter
batchSize = 1
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
K_list = [1, 3, 5, 10, 15] #prec@1 .....prec@NoofLabels
precAtK = [0.0] * 16
# #As need to get Prec only on last 50% of test data as first 50% is for cross validation
# valid=int(len(truePre)*0.5)
# pred = pred[valid:]
# truePre = truePre[valid:]
for i, v in enumerate(pred):
temp = [(labId, labProb) for labId, labProb in enumerate(v)]
temp = sorted(
temp, key=lambda x: x[1],
reverse=True) #sorting based on label probability to get top k
for ele in K_list: #1....No of Labels
pBag = 0 #no of true positive for this instance
for itr in range(ele): #top k ie top ele
if truePre[i][0][temp[itr][0]] == 1:
precAtK[ele] += 1
# pBag += 1
# precAtK[ele] += float(pBag)/float(ele)
f = open(outputfile, "a")
output = sys.argv[9]
for k in K_list:
precAtK[k] /= (k * len(pred))
print("Prec@" + str(k) + " = " + str(precAtK[k]))
output = output + "," + "Prec@" + str(k) + "=," + str(precAtK[k])
# for key,val in enumerate(precAtK):
# if key in K_list : #As need Prec@k only on Klist ie 1,3,5,10
# # print( val )
# # print( val/len(pred) )
# print( "prec@" + key + "=" + str(val/(key*len(pred))) )
# # f.write(str(key)+","+ str(val/len(pred))+"\n")
# # f.write(str(key)+","+ str(val/(key*len(pred))+"\n")
# output = output + ", prec@" + key + "," + str(val/(key*len(pred)))
f.write(output + "\n")
f.close()
def ComputePrecisionK(modelfile, testfile, param, ep, outputfile):
param = param.split("_")
maxParagraphLength = param[1]
maxParagraphs = param[2]
filterSizes = [int(x) for x in param[3].split("-")]
num_filters = param[4]
wordEmbeddingDimension = param[5]
lrate = float(param[8])
poolLength = param[9]
labels = 30938
vocabularySize = 101939
# print(filterSizes)
# print(maxParagraphLength)
# print(maxParagraphs)
# print(lrate)
model = Model(maxParagraphs, maxParagraphLength, labels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension, lrate,
poolLength)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
print("Computing Prec@k")
#check if batchsize needs to be taken by parameter
batchSize = 1
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
K_list = [1, 3, 5] #prec@1 .....prec@NoofLabels
precAtK = [0.0] * 6
# #As need to get Prec only on last 50% of test data as first 50% is for cross validation
# valid=int(len(truePre)*0.5)
# pred = pred[valid:]
# truePre = truePre[valid:]
for i, v in enumerate(pred):
temp = [(labId, labProb) for labId, labProb in enumerate(v)]
temp = sorted(
temp, key=lambda x: x[1],
reverse=True) #sorting based on label probability to get top k
for ele in K_list: #1....No of Labels
pBag = 0 #no of true positive for this instance
for itr in range(ele): #top k ie top ele
if truePre[i][0][temp[itr][0]] == 1:
precAtK[ele] += 1
# pBag += 1
# precAtK[ele] += float(pBag)/float(ele)
f = open(outputfile, "a")
output = str(m) + "/cnn_dynamicmaxpool_" + str(ep)
for k in K_list:
precAtK[k] /= (k * len(pred))
print("Prec@" + str(k) + " = " + str(precAtK[k]))
# output = output + "," + "Prec@" + str(k) + "=," + str(precAtK[k])
f.write(output + "\n")
f.close()
def genAnalysis(modelfile, testfile, confusionFile):
maxParagraphLength = 20
maxParagraphs = 5
filterSizes = [1]
num_filters = 64
wordEmbeddingDimension = 30
lrate = float(1e-3)
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs, maxParagraphLength, labels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension, lrate)
testing = DataParser(maxParagraphs, maxParagraphLength, labels,
vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
testing.restore()
truePre = []
pred = []
for itr in range(testing.totalPages):
data = testing.nextBatch(1)
truePre.append(data[0])
pre = model.predict(data)
pred.append(pre[0])
valid = int(
len(truePre) * 0.5
) #using first 25% data for threshold tuning - we have merged test and cv files
thresLab = {}
for la in range(labels):
t = []
p = []
for i in range(valid):
t.append(truePre[i][0][la])
p.append(pred[i][la])
bestF, bestThre = thresholdTuning(t, p)
thresLab[la] = bestThre
print(thresLab)
labelIDName = open("../labelId-labelName-full.txt").read().split("\n")
labelIDName = [[int(x.split("\t")[0]),
x.split("\t")[1].rstrip()] for x in labelIDName]
# print(labelIDName)
#making it a dictionary
labelname = dict(labelIDName)
# print(labelName[9026])
f = open(confusionFile, "w")
for itr in range(valid,
testing.totalPages): #on next 75% getting analaysis
predLabel = [pred[itr][i] > thresLab[i] for i in range(labels)]
output = ""
for i in range(labels):
if predLabel[i] == 1:
output = output + "," + labelname[i]
tn, fp, fn, tp = confusion_matrix(truePre[itr][0], predLabel).ravel()
f.write(
str(itr) + "," + str(tn) + "," + str(fp) + "," + str(fn) + "," +
str(tp) + "," + output + "\n")
f.close()
def ComputePrecisionK(modelfile,testfile):
maxParagraphLength = 20
maxParagraphs = 10
filterSizes = [2,3]
num_filters = 16
wordEmbeddingDimension = 50
lrate = float(0.001)
poolLength = 5
labels = 30938
vocabularySize = 101939
model = Model(maxParagraphs,maxParagraphLength,labels,vocabularySize,\
filterSizes,num_filters,wordEmbeddingDimension,lrate,poolLength)
testing = DataParser(maxParagraphs,maxParagraphLength,labels,vocabularySize)
testing.getDataFromfile(testfile)
model.load(modelfile)
print("loading done")
print("no of test examples: " + str(testing.totalPages))
batchSize = 1
testing.restore()
truePre=[]
pred=[]
for itr in range(testing.totalPages):
data=testing.nextBatch(1)
truePre.append(data[0])
pre=model.predict(data)
pred.append(pre[0])
labelids = open("../../dataset/sorted_labelid.txt","r").read().strip().split("\n")
labelids = [ int(x) for x in labelids ]
no_of_partition = 10
partition_size = labels / no_of_partition
prec1 = [0]*no_of_partition
prec3 = [0]*no_of_partition
prec5 = [0]*no_of_partition
for i,v in enumerate(pred):
temp = [(labId,labProb) for labId,labProb in enumerate(v) ]
temp = sorted(temp,key=lambda x:x[1],reverse=True) #sorting based on label probability to get top k
#finding how many of these were true
if truePre[i][0][temp[0][0]] == 1:
prec1[ labelids.index( temp[0][0] ) / partition_size ] += 1
prec3[ labelids.index( temp[0][0] ) / partition_size ] += 1
prec5[ labelids.index( temp[0][0] ) / partition_size ] += 1
if truePre[i][0][temp[1][0]] == 1:
prec3[ labelids.index( temp[1][0] ) / partition_size ] += 1
prec5[ labelids.index( temp[1][0] ) / partition_size ] += 1
if truePre[i][0][temp[2][0]] == 1:
prec3[ labelids.index( temp[2][0] ) / partition_size ] += 1
prec5[ labelids.index( temp[2][0] ) / partition_size ] += 1
if truePre[i][0][temp[3][0]] == 1:
prec5[ labelids.index( temp[3][0] ) / partition_size ] += 1
if truePre[i][0][temp[4][0]] == 1:
prec5[ labelids.index( temp[4][0] ) / partition_size ] += 1
print( prec1 )
print( prec3 )
print( prec5 )
prec1 = [ ( float(x) /testing.totalPages )*100 for x in prec1 ]
prec3 = [ ( float(x) /( 3 * testing.totalPages) )*100 for x in prec3 ]
prec5 = [ ( float(x) /( 5 * testing.totalPages) )*100 for x in prec5 ]
print( prec1 )
print( prec3 )
print( prec5 )
folder_name = sys.argv[8]
lrate = float(sys.argv[9])
poolLength = int(sys.argv[10])
nlabels = 30938
# nlabels = 968 for parabel cluster 16
vocabularySize = 101939
training = DataParser(maxParagraphs, paragraphLength, nlabels, vocabularySize)
# training.getDataFromfile("../../dataset/minusTop5Labels/wiki10_minusTop5labels_train.txt")
#training.getDataFromfile("../../dataset/minusTop5Labels/wiki10_minusTop5labels_train.txt")
# training.getDataFromfile("/home/khushboo/wiki10/dataset/original_split/wiki10_train_cluster_16.txt")
training.getDataFromfile(
"/home/khushboo/wiki10/dataset/original_split/wiki10_miml_train.txt")
model = Model(maxParagraphs, paragraphLength, nlabels, vocabularySize,
filterSizes, num_filters, wordEmbeddingDimension, lrate,
poolLength)
costfile = open("results/costfile.txt", "a")
output = folder_name
epoch = 0
# epochEnd=400
costepochs = []
for e in range(epoch, epochEnd):
cost = 0
for itr in range(int(training.totalPages / batchSize)):
cost += model.train(training.nextBatch(batchSize))