def encode_bert(self,
query_tok,
query_mask,
doc_tok,
doc_mask,
customBert=None):
BATCH, QLEN = query_tok.shape
DIFF = 3 # = [CLS] and 2x[SEP]
maxlen = self.bert.config.max_position_embeddings
MAX_DOC_TOK_LEN = maxlen - QLEN - DIFF
doc_toks, sbcount = modeling_util.subbatch(doc_tok, MAX_DOC_TOK_LEN)
doc_mask, _ = modeling_util.subbatch(doc_mask, MAX_DOC_TOK_LEN)
query_toks = torch.cat([query_tok] * sbcount, dim=0)
query_mask = torch.cat([query_mask] * sbcount, dim=0)
CLSS = torch.full_like(query_toks[:, :1],
self.tokenizer.vocab['[CLS]'])
SEPS = torch.full_like(query_toks[:, :1],
self.tokenizer.vocab['[SEP]'])
ONES = torch.ones_like(query_mask[:, :1])
NILS = torch.zeros_like(query_mask[:, :1])
# build BERT input sequences
toks = torch.cat([CLSS, doc_toks, SEPS, query_toks, SEPS], dim=1)
mask = torch.cat([ONES, doc_mask, ONES, query_mask, ONES], dim=1)
# segment_ids = torch.cat([NILS] * (2 + QLEN) + [ONES] * (1 + doc_toks.shape[1]), dim=1)
segment_ids = torch.cat([NILS] * (2 + doc_toks.shape[1]) + [ONES] *
(1 + QLEN),
dim=1)
toks[toks == -1] = 0 # remove padding (will be masked anyway)
# print(MAX_DOC_TOK_LEN, doc_tok.shape)
# execute BERT model
if not customBert:
result = self.bert(toks, segment_ids.long(), mask)
else:
result = customBert(toks, segment_ids.long(), mask)
# extract relevant subsequences for query and doc
query_results = [r[:BATCH, 1:QLEN + 1] for r in result]
doc_results = [r[:, QLEN + 2:-1] for r in result]
doc_results = [
modeling_util.un_subbatch(r, doc_tok, MAX_DOC_TOK_LEN)
for r in doc_results
]
# build CLS representation
cls_results = []
for layer in result:
cls_output = layer[:, 0]
cls_result = []
for i in range(cls_output.shape[0] // BATCH):
cls_result.append(cls_output[i * BATCH:(i + 1) * BATCH])
cls_result = torch.stack(cls_result, dim=2).mean(dim=2)
cls_results.append(cls_result)
return cls_results, query_results, doc_results
def encode_bert(self, query_tok, doc_tok):
# query_tok includes CLS token
# doc_tok includes SEP token
BATCH = query_tok.shape[0]
QLEN = 20
DIFF = 3
maxlen = self.bert.config.max_position_embeddings # 512
MAX_DLEN = maxlen - QLEN - DIFF # 489
# 1(CLS) + 20(Q) + 1(SEP) + 489(D) + 1(SEP) = 512
query_mask = torch.where(query_tok > 0, torch.ones_like(query_tok), torch.zeros_like(query_tok))
doc_mask = torch.where(doc_tok > 0, torch.ones_like(doc_tok), torch.zeros_like(doc_tok))
doc_toks, sbcount = modeling_util.subbatch(doc_tok, MAX_DLEN)
doc_masks, _ = modeling_util.subbatch(doc_mask, MAX_DLEN)
query_toks = torch.cat([query_tok] * sbcount, dim=0)
query_masks = torch.cat([query_mask] * sbcount, dim=0)
CLSS = torch.full_like(query_toks[:, :1], self.tokenizer.vocab['[CLS]'])
SEPS = torch.full_like(query_toks[:, :1], self.tokenizer.vocab['[SEP]'])
ONES = torch.ones_like(query_masks[:, :1])
NILS = torch.zeros_like(query_masks[:, :1])
# build BERT input sequences
toks = torch.cat([CLSS, query_toks, SEPS, doc_toks, SEPS], dim=1)
segs = torch.cat([NILS] * (2 + QLEN) + [ONES] *(1 + doc_toks.shape[1]), dim=1)
# segs = torch.cat([NILS] * (2 + QLEN) + [doc_masks, ONES], dim=1)
masks = torch.cat([ONES, query_masks, ONES, doc_masks, ONES], dim=1)
# execute BERT
result = self.bert(toks, segs.long(), masks)
# extract relevant subsequences for query and doc
query_results = [r[:BATCH, 1:QLEN+1] for r in result] # (N, QLEN)
doc_results = [r[:, QLEN+2:-1] for r in result] # (N, MAX_DLEN)
doc_results = [modeling_util.un_subbatch(r, doc_tok, MAX_DLEN) for r in doc_results]
# build CLS representation
cls_results = []
for layer in result:
cls_output = layer[:, 0]
cls_result = []
for i in range(cls_output.shape[0] // BATCH):
cls_result.append(cls_output[i*BATCH:(i+1)*BATCH])
cls_result = torch.stack(cls_result, dim=2).mean(dim=2)
cls_results.append(cls_result)
return query_tok, doc_tok, cls_results, query_results, doc_results
def encode_bert(self, query_tok, query_mask, doc_tok, doc_mask):
BATCH, QLEN = query_tok.shape
DIFF = 3 # = [CLS] and 2x[SEP]
maxlen = self.bert.config.max_position_embeddings
MAX_DOC_TOK_LEN = maxlen - QLEN - DIFF
doc_toks, sbcount = modeling_util.subbatch(doc_tok, MAX_DOC_TOK_LEN)
doc_mask, _ = modeling_util.subbatch(doc_mask, MAX_DOC_TOK_LEN)
query_toks = torch.cat([query_tok] * sbcount, dim=0)
query_mask = torch.cat([query_mask] * sbcount, dim=0)
CLSS = torch.full_like(query_toks[:, :1],
self.tokenizer.vocab['[CLS]'])
SEPS = torch.full_like(query_toks[:, :1],
self.tokenizer.vocab['[SEP]'])
ONES = torch.ones_like(query_mask[:, :1])
NILS = torch.zeros_like(query_mask[:, :1])
# build BERT input sequences query & doc
q_toks = torch.cat([CLSS, query_toks, SEPS], dim=1)
q_mask = torch.cat([ONES, query_mask, ONES], dim=1)
q_segid = torch.cat([NILS] * (2 + QLEN), dim=1)
q_toks[q_toks == -1] = 0
d_toks = torch.cat([CLSS, doc_toks, SEPS], dim=1)
d_mask = torch.cat([ONES, doc_mask, ONES], dim=1)
d_segid = torch.cat([NILS] * (2 + doc_toks.shape[1]), dim=1)
d_toks[d_toks == -1] = 0
# execute BERT model
q_result_tuple = self.bert(q_toks, q_mask, q_segid.long())
d_result_tuple = self.bert(d_toks, d_mask, d_segid.long())
q_result = q_result_tuple[2]
d_result = d_result_tuple[2]
# extract relevant subsequences for query and doc
query_results = [r[:BATCH, 1:-1] for r in q_result]
doc_results = [r[:, 1:-1] for r in d_result]
doc_results = [
modeling_util.un_subbatch(r, doc_tok, MAX_DOC_TOK_LEN)
for r in doc_results
]
# build CLS representation
q_cls_results = []
for layer in q_result:
cls_output = layer[:, 0]
cls_result = []
for i in range(cls_output.shape[0] // BATCH):
cls_result.append(cls_output[i * BATCH:(i + 1) * BATCH])
cls_result = torch.stack(cls_result, dim=2).mean(dim=2)
q_cls_results.append(cls_result)
d_cls_results = []
for layer in d_result:
cls_output = layer[:, 0]
cls_result = []
for i in range(cls_output.shape[0] // BATCH):
cls_result.append(cls_output[i * BATCH:(i + 1) * BATCH])
cls_result = torch.stack(cls_result, dim=2).mean(dim=2)
d_cls_results.append(cls_result)
return q_cls_results, d_cls_results, query_results, doc_results