def session_initialization(self):
self.session_start_time = time()
self.log_file_path = get_log_file_path(OUTPUT_FOLDER)
writeFile(self.log_file_path, '\n%s, ***** Session starts\n'%get_time_stamp())
self.result_file_path = self.log_file_path.replace(".log", ".csv")
writeFile(self.result_file_path, self.result_header + "\n-----------------------------------------\n")
self.flag_first_feeding = True
def chk_end_feeding(self):
if self.feeding_cnt >= MAX_FEEDING_CNT or self.trial_cnt_without_timeout >= MAX_TRIAL_CNT:
self.flag_feeding = False # stop feeding process.
#sleep(1.5)
#ARD_M.send('OPEN_FEEDER') # Leave the feeder open
#sleep(0.2)
writeFile(self.log_file_path, '%s, Feeding is finished'%get_time_stamp())
def save_movie(command, log_file_path):
# OBSOLETE;; saving a movie file on the run
tmp_img_dir_path = command.split(",")[1]
command = command.split(",")[0]
writeFile(log_file_path, '%s, ffmpeg command execution started'%get_time_stamp())
os.system(command)
writeFile(log_file_path, '%s, ffmpeg command execution finished'%get_time_stamp())
rmtree(tmp_img_dir_path)
def record_incorrect_button_press(self, arduino_msg):
tmp_result_csv = copy(self.result_csv)
# Because even if it's a incorrect response,
# the cat still can press the correct button again. (Depending on the training phase)
# it uses a copy of the self.result_csv to write the incorrect response in the result file.
tmp_result_csv = tmp_result_csv.replace("Trial#", "%.3i"%self.trial_cnt)
tmp_result_csv = tmp_result_csv.replace("Trial_start_time", get_time_stamp())
if self.chosen_random_snd == SND_FOIL_IDX: tmp_result_csv = tmp_result_csv.replace("Correct_response", "No-motion")
else: tmp_result_csv = tmp_result_csv.replace("Correct_response", "%s-press"%BUTTON_TEXT[self.chosen_random_snd])
tmp_result_csv = tmp_result_csv.replace("Response_time", get_time_stamp())
if self.chosen_random_snd == SND_FOIL_IDX: tmp_result_csv = tmp_result_csv.replace("Response", "MOTION")
else: tmp_result_csv = tmp_result_csv.replace("Response", "%s-press"%arduino_msg[0])
tmp_result_csv = tmp_result_csv.replace("Correctness", 'INCORRECT')
writeFile(self.result_file_path, tmp_result_csv)
def onExit(self, termination = False, msg = None):
if msg is not None:
print msg
writeFile(PROGRAM_LOG_PATH, '\n\n%s, %s'%(get_time_stamp(), msg))
self.main_ai_conn.close()
for i in range(NUMBER_OF_CAMERAS): self.main_vi_conn[i].close()
self.main_schema_conn.close()
self.main_msgB_conn.close()
self.ai_conn.close()
self.ao_conn.close()
for i in range(NUMBER_OF_CAMERAS): self.vi_conn[i].close()
self.schema_conn.close()
self.msgB_conn.close()
if termination:
self.ai_p.terminate()
self.ao_p.terminate()
for i in range(NUMBER_OF_CAMERAS): self.vi_p[i].terminate()
self.schema_p.terminate()
self.msgB_p.terminate()
### checking log files and generating movie files
ui = raw_input("The next process will go through all the log files in the output folder and try to generate movie files(mp4) deleting the temporary image folders.\nProceed? (Y/N)")
if ui.strip().upper() == 'Y':
uvcInst = uvc.VideoConverter()
uvcInst.run()
### taging wave sound files
print "-----------------------\n"
ui = raw_input("The next process will go through all the wave-sound-files in the output folder and try to tag with proper category names.\nProceed? (Y/N)")
if ui.strip().upper() == 'Y':
ustInst = ust.WaveFileRecognizer(OUTPUT_PATH)
ustInst.run()
### checking MR(Movements Record) files and generating PNG files to show it graphically
print "-----------------------\n"
ui = raw_input("The next process will go through all the MR(Movements Record) files in the output folder and try to generate PNG picture files drawing the movements.\nProceed? (Y/N)")
if ui.strip().upper() == 'Y':
umdInst = umd.M_drawer(OUTPUT_PATH)
umdInst.run()
### Make folder for each type of files and move
print "-----------------------\n"
ui = raw_input("Make folder for each type of result files and movie files accordingly.\nProceed? (Y/N)")
if ui.strip().upper() == 'Y':
umf.run()
def button_familiarization(self):
# This is for familiarizing button-press for cats
arduino_msg = ARD_M.receive('Button1', 0.1) # Try to receive a 'Button1'-msg for 0.1 second.
if arduino_msg == ['Button1', 'HIGH']:
#main_ao_conn.send('play_sound:button1') # play a sound for the button1
writeFile(self.log_file_path, '%s, Button1 was pressed'%get_time_stamp())
self.button1_pressed_time = time()
self.flag_send_msg_to_vi_conn = True # after certain time, it has to seek for the movement at feeder again
if time()-self.button1_pressed_time > 120: # wait for 2 minutes after button is pressed
if time()-self.button1_snd_played_time > 10: # 10 sec passed after last button1 snd play
if self.flag_send_msg_to_vi_conn == True:
AAO.main_vi_conn[1].send('check_motion_at_feeder')
self.flag_send_msg_to_vi_conn = False
if self.msg_from_vi_conn == "motion_at_feeder":
AAO.main_ao_conn.send('play_sound:button1')
self.button1_snd_played_time = time()
self.flag_send_msg_to_vi_conn = True
def activate_feeder(self):
ARD_M.send('FEED') # Activate the feeder
writeFile(self.log_file_path, '%s, Feeder activated'%get_time_stamp())
sleep(0.5)
'''
ARD_M.send('Query:distance') # investigate the distance to the food level
sleep(0.2)
distance_to_food = ARD_M.receive('dist_to_food', None) # get the distance-to-food measurements. No timeout-time.
### Convert it(supposed to be 10 measurements) into a list of integers.
del_list = []
for i in range(len(distance_to_food)):
try: distance_to_food[i] = int(distance_to_food[i])
except: del_list.append(i)
for i in range(len(del_list)): distance_to_food.pop(del_list[i]-i)
writeFile(self.log_file_path, '%s, Distance measurements to food, %s'%(get_time_stamp(), str(distance_to_food)))
distance_to_food = int(median(distance_to_food))
# Record the median value of measurements
writeFile(self.log_file_path, '%s, Distance to food, %i cm'%(get_time_stamp(), distance_to_food))
if distance_to_food > 30 or self.feeding_cnt >= MAX_FEEDING_CNT:
# The food level is greater than the threshold (in centi-meter)
# or the maximum feeding count is reached
'''
self.chk_end_feeding()
def send_email(to=[EMAIL_RECEIVER], subject='test', text='test', files=[], server="localhost", log_file_path=''):
# send an email
msg = MIMEMultipart()
msg['From'] = EMAIL_SENDER
msg['To'] = COMMASPACE.join(to)
msg['Date'] = formatdate(localtime=True)
msg['Subject'] = subject
msg.attach( MIMEText(text) )
for file in files:
part = MIMEBase('application', "octet-stream")
part.set_payload( open(file,"rb").read() )
Encoders.encode_base64(part)
part.add_header('Content-Disposition', 'attachment; filename="%s"'
% os.path.basename(file))
msg.attach(part)
try:
mailserver = smtplib.SMTP(server)
mailserver.ehlo()
mailserver.starttls()
mailserver.ehlo()
mailserver.login("ohj4", "38321234")
mailserver.sendmail(EMAIL_SENDER, to, msg.as_string() )
mailserver.quit()
if len(log_file_path) > 0 : writeFile(log_file_path, '\n%s, *** Email, <%s> was sent.\n'%(get_time_stamp(), subject))
except:
'''
try: mailserver.quit()
except: pass
'''
if len(log_file_path) > 0 : writeFile(log_file_path, "Failed to send an email.")
pass
msg = None
mailserver = None
def terminate_trial(self, flag_timeout_record = False):
if self.chosen_random_snd >= SND_BUTTON1_IDX: # button-press trial
AAO.main_msgB_conn.send('chk_ARD_msg:end')
sleep(0.5)
if self.trial_correctness != 'NONE': # there was either 'correct' or 'incorrect' response
self.trial_cnt += 1
self.trial_cnt_without_timeout += 1
self.chk_end_feeding()
elif self.trial_correctness == 'NONE' and self.motion_was_detected == True: # timeout trial
self.trial_cnt += 1
self.trial_correctness = 'TIMEOUT'
AAO.main_ao_conn.send('play_sound:neg_feedback2') # type 2 negative feedback sound is used to notify the trial is finished with incorrect response
if flag_timeout_record == True:
self.result_csv = self.result_csv.replace("Response_time", get_time_stamp())
self.result_csv = self.result_csv.replace("Response", "TIMEOUT")
self.result_csv = self.result_csv.replace("Correctness", 'TIMEOUT')
writeFile(self.result_file_path, self.result_csv)
writeFile(self.log_file_path, '%s, %i seconds has passed since the trial started.'%(get_time_stamp(), TRIAL_LENGTH))
else:
self.trial_correctness = 'NO_MOTION'
writeFile(self.log_file_path, '%s, End of trial.'%(get_time_stamp()))
self.feeding_snd_play_time = -1 # end of trial
def record_correct_button_press(self):
if self.motion_was_detected == False: self.record_trial_start()
self.result_csv = self.result_csv.replace("Response_time", get_time_stamp())
self.result_csv = self.result_csv.replace("Response", "%s-press"%BUTTON_TEXT[self.chosen_random_snd])
self.result_csv = self.result_csv.replace("Correctness", 'CORRECT')
writeFile(self.result_file_path, self.result_csv)
def scheduled_feeding(self):
curr_time = time()
if self.flag_first_feeding == True and curr_time - self.session_start_time > 60 * 2: # seconds * minutes
# Feeding hasn't started yet and
# feeding starts some seconds(typically 120 sec) after the program started
self.flag_first_feeding = False # turn off the flag
self.flag_feeding = True # Start feeding
self.last_feeding_time = time()
self.waiting_time_for_feeding = -1 # At the very beginning, feed at once.
if self.flag_feeding:
if curr_time - self.last_feeding_time > self.waiting_time_for_feeding:
# it's a feeding time
'''
### OBSOLETE
### Simply choose the button with certain probabilities.
chosen_number = uniform(0,1)
### 0;SND_NAME_IDX, 1;SND_BUTTON1_IDX, 2;SND_BUTTON2_IDX, 3;SND_BUTTON3_IDX
if chosen_number < 0.3333: self.chosen_random_snd = 1
elif 0.3333 <= chosen_number < 0.6666: self.chosen_random_snd = 2
else: self.chosen_random_snd = 3
'''
#self.flag_4th_speaker_test = False
#chosen_number = uniform(0,1)
#if chosen_number < 1.1:
AAO.main_ao_conn.send('4th_speaker_test')
self.flag_4th_speaker_test = True
'''
chosen_number = uniform(0,1)
if chosen_number < 0.3:
if chosen_number < 0.15:
AAO.main_ao_conn.send('SWS_test')
self.flag_SWS_test = True
else:
AAO.main_ao_conn.send('NVS_test')
self.flag_NVS_test = True
'''
button_indices = range(SND_BUTTON1_IDX, SND_BUTTON3_IDX+1) # make the list of numbers for the buttons(1~3)
if FLAG_BALANCE_CORRECTNESS == True:
# if certain button_index has 1 more correct trials than
# the button index which has the minimum number of correct trials,
# then exclude it,
# to balance out that the cat getting the reward from which button.
if len(self.past_correct_snd_idx) >= 1:
correct_trial_cnt = []
for idx in button_indices:
correct_trial_cnt.append(self.past_correct_snd_idx.count(idx))
min_correct_trial_cnt = min(correct_trial_cnt)
button_index_removal = []
for i in range(len(button_indices)):
if correct_trial_cnt[i] - min_correct_trial_cnt > 0: button_index_removal.append(button_indices[i])
for i in range(len(button_index_removal)): button_indices.remove(button_index_removal[i])
'''
if self.past_correct_snd_idx[0] == self.past_correct_snd_idx[1]:
# if the past 2 trials were the same button-trials
button_indices.remove(self.past_correct_snd_idx[0]) # get rid of that number from the list
'''
'''
### store the button numbers for the 2 recent trials
self.past_correct_snd_idx.append(copy(self.chosen_random_snd))
if len(self.past_correct_snd_idx) > 2: self.past_correct_snd_idx.pop(0)
'''
self.chosen_random_snd = choice(button_indices)
#self.chosen_random_snd = 2
if self.currMST == []:
self.currMST = copy(self.modulated_snd_trials)
shuffle(self.currMST)
self.flag_SWS_test = False
self.flag_NVS_test = False
if len(button_indices) > 1:
# Only 1 sound left, meaning it should be solved by the cat.
# Since the cat can abuse the modified sound to avoid to press certain button,
# Modulated sound happens when there're more than one sound is in the choice-list.
if self.currMST[0] == 'SWS':
AAO.main_ao_conn.send('SWS_test')
self.flag_SWS_test = True
elif self.currMST[0] == 'NVS':
AAO.main_ao_conn.send('NVS_test')
self.flag_NVS_test = True
self.currMST.pop(0)
# very 1st feeding: button3 trial
#if self.waiting_time_for_feeding == -1: self.chosen_random_snd = 3
if self.chosen_random_snd == SND_NAME_IDX:
AAO.main_ao_conn.send('play_sound:name') # Send a message to play a sound
elif SND_NAME_IDX < self.chosen_random_snd: # button (and a foil)
#AAO.main_ao_conn.send('play_sound:name') # name call
#sleep(3) # name call: 2.5s + pause: 0.5s
writeFile(self.log_file_path, '%s, Sound for the trial starts.'%get_time_stamp())
AAO.main_ao_conn.send('play_sound:%s'%BUTTON_TEXT[self.chosen_random_snd]) # play a sound for the button#
### initialization
self.motion_was_detected = False
self.result_csv = copy(self.result_header)
_add_info_txt = ''
if self.flag_4th_speaker_test == True: _add_info_txt += '4s_test'
if self.flag_SWS_test == True: _add_info_txt += '/SWS'
if self.flag_NVS_test == True: _add_info_txt += '/NVS'
if _add_info_txt == '': self.result_csv = self.result_csv.replace('Additional_Info', '_')
else: self.result_csv = self.result_csv.replace('Additional_Info', _add_info_txt)
self.trial_correctness = 'NONE'
'''
elif self.chosen_random_snd == 1:
writeFile(self.log_file_path, '%s, Trial for <arbitrary_name_00> starts'%get_time_stamp())
AO.main_ao_conn.send('play_sound:arbitrary_name_00')
'''
self.flag_process_after_snd_play = True # Initial process after the sound play has to be done
self.feeding_snd_play_time = time()
self.last_feeding_time = self.feeding_snd_play_time
ARD_M.aConn.flushInput() # flush the serial connection
self.arduino_msg = ""
self.waiting_time_for_feeding = randint(TRIAL_INTERVAL[0], TRIAL_INTERVAL[1])*60 # randomly determine the next feeding-time
elapsed_time_after_feeding_snd = time() - self.feeding_snd_play_time
if self.feeding_snd_play_time != -1: # feeding sound was already played.
if elapsed_time_after_feeding_snd > 1: # wait for 1 second (wait for a bit for sound-playing)
if elapsed_time_after_feeding_snd < TRIAL_LENGTH + 1: # it hasn't been TRIAL_LENGTH yet after play
# Initial behavior after feeding sound play
# ; Send a message to check for the movements around the feeder
if self.flag_process_after_snd_play:
AAO.main_msgB_conn.send('chk_vm_msg:start')
if SND_BUTTON1_IDX <= self.chosen_random_snd <= SND_BUTTON3_IDX: # any button-trial
AAO.main_msgB_conn.send('chk_ARD_msg:start')
sleep(0.2)
self.flag_process_after_snd_play = False
if FLAG_RTOI == True: # Trial is repeated on the wrong response
if self.trial_correctness == 'INCORRECT': # there was already an incorrect-response
if time() - self.incorrect_response_time < FROZEN_TIME_ON_INCORRECT:
# FRONZEN_TIME meaning punishment-time is not over yet
### Keep playing the neg_feedback1 for some time
if time() - self.incorrect_response_time < 1:
AAO.main_ao_conn.send('play_sound:neg_feedback1')
sleep(0.6) # length of neg_feedback1 is 0.56 sec.
return # exit the function
else:
if TRIAL_LENGTH - elapsed_time_after_feeding_snd > FROZEN_TIME_ON_INCORRECT-1:
# if the left time is long enough (here longer than the punishment time)
# play a sound for the button#; (beginning of the same trial again)
AAO.main_ao_conn.send('play_sound:%s'%BUTTON_TEXT[self.chosen_random_snd])
self.trial_correctness = 'NONE'
ARD_M.aConn.flushInput() # flush the serial connection
self.arduino_msg = ""
else:
self.terminate_trial(flag_timeout_record=True)
if self.msg_from_vi_conn == "motion_at_feeder": # there was a motion around the feeder
if self.chosen_random_snd == SND_NAME_IDX: # name sound was played
self.feeding_cnt += 1
self.activate_feeder()
writeFile(self.log_file_path, '%s, Trial for <name> finished'%get_time_stamp())
self.feeding_snd_play_time = -1
elif self.chosen_random_snd == SND_FOIL_IDX:
AAO.main_ao_conn.send('play_sound:neg_feedback1')
AAO.main_ao_conn.send('play_sound:neg_feedback2')
self.incorrect_response_time = time()
self.record_incorrect_button_press(['MOTIOIN'])
self.trial_correctness = 'INCORRECT'
writeFile(self.log_file_path, '%s, Incorrect response(motion detection) on the foil stimulus.'%(get_time_stamp()))
if FLAG_RTOI == False: # RTOI: Repeat Trial On Incorrect-response
self.terminate_trial()
else: # Trial will be repeated
ARD_M.send('led_on') # turn the red LED light on (will be automatically off after certain time by Arduino chip itself)
elif 0 < self.chosen_random_snd < 4: # button-press trial
writeFile(self.log_file_path, '%s, Motion detected at feeder after <%s> sound-play'%(get_time_stamp(), BUTTON_TEXT[self.chosen_random_snd]))
if self.motion_was_detected == False:
# After playing a stimulus, the motion was detected for the 1st time
if self.flag_4th_speaker_test == True: AAO.main_ao_conn.send('4th_speaker_test')
if self.flag_SWS_test == True: AAO.main_ao_conn.send('SWS_test')
if self.flag_NVS_test == True: AAO.main_ao_conn.send('NVS_test')
AAO.main_ao_conn.send('play_sound:%s'%BUTTON_TEXT[self.chosen_random_snd]) # play a sound for the button#
self.record_trial_start()
self.motion_was_detected = True
'''
elif self.chosen_random_snd == 1: # arbitrary_name_00 sound was played
writeFile(self.log_file_path, '%s, Motion detected around the feeder after playing <arbitrary_name_00> sound'%get_time_stamp())
AAO.main_ao_conn.send('play_sound:neg_feedback')
writeFile(self.log_file_path, '%s, Trial for <arbitrary_name_00> finished'%get_time_stamp())
self.feeding_snd_play_time = -1
'''
if self.chosen_random_snd >= SND_BUTTON1_IDX: # button-press trial
if self.arduino_msg != "": # there is some message from Arduino
arduino_msg = self.arduino_msg.split(",")
if arduino_msg == [BUTTON_TEXT[self.chosen_random_snd], 'HIGH']:
# correct button was pressed
#AAO.main_ao_conn.send('play_sound:%s'%BUTTON_TEXT[self.chosen_random_snd]) # play a sound for the button#
writeFile(self.log_file_path, '%s, %s was pressed.'%(get_time_stamp(), arduino_msg[0]))
sleep(0.3)
self.feeding_cnt += 1
self.activate_feeder()
self.record_correct_button_press()
self.trial_correctness = 'CORRECT'
self.past_correct_snd_idx.append(copy(self.chosen_random_snd)) # store this button index
self.terminate_trial()
else:
# wrong button was pressed
if self.trial_correctness == 'NONE':
if self.flag_SWS_test == False and self.flag_NVS_test == False: AAO.main_ao_conn.send('play_sound:neg_feedback1')
else: self.activate_feeder() # in SWS or NVS trial, CATOS's response is always positive
self.incorrect_response_time = time()
self.record_incorrect_button_press(arduino_msg)
self.trial_correctness = 'INCORRECT'
writeFile(self.log_file_path, '%s, %s was pressed. Incorrect press.'%(get_time_stamp(), arduino_msg[0]))
if FLAG_RTOI == False: # RTOI: Repeat Trial On Incorrect-response
if self.flag_SWS_test == False and self.flag_NVS_test == False: AAO.main_ao_conn.send('play_sound:neg_feedback2')
self.terminate_trial()
else: # Trial will be repeated
ARD_M.send('led_on') # turn the red LED light on (will be automatically off after certain time by Arduino chip itself)
else: # TRIAL_LENGTH passed
self.terminate_trial(flag_timeout_record=True)
def schema_run(schema_conn):
# Running a schema which AA runs on thought a session
writeFile(PROGRAM_LOG_PATH, "%s, ***** Staring of the program.\n\n"%get_time_stamp())
chk_resource_usage(PROGRAM_LOG_PATH) # check the resource (cpu, memory) usage
last_chk_resource_time = time()
flag_session_changed_to_off = False
flag_session_changed_to_on = False
while True:
if time()-last_chk_resource_time > 60 * 30: # every a half an hour
chk_resource_usage(PROGRAM_LOG_PATH) # check the resource (cpu, memory) usage
last_chk_resource_time = time()
# If the session time is over, archive all the data
# If the session time is resumed, update the log-file and csv-result-file.
if chk_session_time(SESSION_START_HOUR, SESSION_END_HOUR) == False:
if flag_session_changed_to_off == False: # 1st run after finishing the session-time
if AAS.feeding_snd_play_time != -1: # if it's middle of a trial
AAS.terminate_trial() # terminate it.
if flag_session_changed_to_on == True:
# The session was on before
# If this is True here, this means it's the very 1st time after staring the program.
# Therefore, there will be nothing to archive.
print '*** The session is over.'
uvcInst = uvc.VideoConverter()
uvcInst.run()
#ustInst = ust.WaveFileRecognizer(OUTPUT_PATH)
#ustInst.run()
umdInst = umd.M_drawer(OUTPUT_PATH)
umdInst.run()
folder_name = get_time_stamp()[:10]
archive_folder_path = os.path.join('archive', folder_name)
umf.run(folder_name, archive_folder_path)
print '-------------------------------------------------------------'
print 'Archiving process is finished at %s.'%get_time_stamp()
print '-------------------------------------------------------------'
flag_session_changed_to_off = True
flag_session_changed_to_on = False
if schema_conn.poll(): # check whether there's any message arrive through the pipe
msg = schema_conn.recv() # receive the message
if msg == 'q': break
sleep(1)
continue
else:
if flag_session_changed_to_on == False: # 1st run after starting the session-time
print '-------------------------------------------------------------'
print 'Session starts at %s.'%get_time_stamp()
print '-------------------------------------------------------------'
flag_session_changed_to_off = False
flag_session_changed_to_on = True
AAS.session_initialization() # Initialize the log-file and result-file
msg = ""
if AAO.main_msgB_conn.poll(): # any message from message board
msg = AAO.main_msgB_conn.recv() # receive
AAS.run(msg)
### msg checking for exiting the program
if schema_conn.poll(): # check whether there's any message arrive through the pipe
msg = schema_conn.recv() # receive the message
if msg == 'q': break