def test_g(self):
motif = 'G'
motif_obj = IUPAC(motif)
assert len(find_iupac('A', motif)) == 0
assert len(motif_obj.find('A')) == 0
assert motif_obj.calc_score('A') == 0
assert len(find_iupac('C', motif)) == 1
assert len(motif_obj.find('C')) == 1
assert motif_obj.calc_score('C') == 0 # DOES NOT do RC
assert len(find_iupac('G', motif)) == 1
assert len(motif_obj.find('G')) == 1
assert motif_obj.calc_score('G') == 1
assert len(find_iupac('T', motif)) == 0
assert len(motif_obj.find('T')) == 0
assert motif_obj.calc_score('T') == 0
assert len(find_iupac('N', motif)) == 0
assert len(motif_obj.find('N')) == 0
assert motif_obj.calc_score('N') == 0
def test_g(self):
motif = 'G'
motif_obj = IUPAC(motif)
assert len(find_iupac('A', motif)) == 0
assert len(motif_obj.find('A')) == 0
assert motif_obj.calc_score('A') == 0
assert len(find_iupac('C', motif)) == 1
assert len(motif_obj.find('C')) == 1
assert motif_obj.calc_score('C') == 0 # DOES NOT do RC
assert len(find_iupac('G', motif)) == 1
assert len(motif_obj.find('G')) == 1
assert motif_obj.calc_score('G') == 1
assert len(find_iupac('T', motif)) == 0
assert len(motif_obj.find('T')) == 0
assert motif_obj.calc_score('T') == 0
assert len(find_iupac('N', motif)) == 0
assert len(motif_obj.find('N')) == 0
assert motif_obj.calc_score('N') == 0
def test_n(self):
motif = 'N'
motif_obj = IUPAC(motif)
assert len(find_iupac('A', motif)) == 1
assert len(motif_obj.find('A')) == 1
assert motif_obj.calc_score('A') == 1
assert len(find_iupac('C', motif)) == 1
assert len(motif_obj.find('C')) == 1
assert motif_obj.calc_score('C') == 1
assert len(find_iupac('G', motif)) == 1
assert len(motif_obj.find('G')) == 1
assert motif_obj.calc_score('G') == 1
assert len(find_iupac('T', motif)) == 1
assert len(motif_obj.find('T')) == 1
assert motif_obj.calc_score('T') == 1
assert len(find_iupac('N', motif)) == 1
assert len(motif_obj.find('N')) == 1
assert motif_obj.calc_score('N') == 1
def test_n(self):
motif = 'N'
motif_obj = IUPAC(motif)
assert len(find_iupac('A', motif)) == 1
assert len(motif_obj.find('A')) == 1
assert motif_obj.calc_score('A') == 1
assert len(find_iupac('C', motif)) == 1
assert len(motif_obj.find('C')) == 1
assert motif_obj.calc_score('C') == 1
assert len(find_iupac('G', motif)) == 1
assert len(motif_obj.find('G')) == 1
assert motif_obj.calc_score('G') == 1
assert len(find_iupac('T', motif)) == 1
assert len(motif_obj.find('T')) == 1
assert motif_obj.calc_score('T') == 1
assert len(find_iupac('N', motif)) == 1
assert len(motif_obj.find('N')) == 1
assert motif_obj.calc_score('N') == 1