#set up log
cleantime = datetime.strftime(datetime.now(),'%Y-%m-%d-%H-%M')
logfile = os.path.join(logdir,
'%s%s.log'%(__file__,cleantime))
log_settings = utils.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
user = os.environ['USER']
logging.info('###START %s :::'%__file__)
logging.info('###USER : %s'%(user))
# get bac2lbl mapping
bac2lbl = bac_to_lbl(mapfile)
# find all subjecs raw directories
subs = mtr.glob('%s/B*_v*'%(syncdir))
subs.sort()
for sub in subs:
_, sid = os.path.split(sub)
subid, visit = sid.split('_')
visitstr = get_realvisit(visit)
if is_bacs(subid):
print subid, 'is bacs'
try:
subid = bac2lbl[subid]
except KeyError:
logging.error('{0} has no LBLID, skipping'.format(subid))
continue
print subid, visit, sub
globstr = os.path.join(sub, '*.tgz')
scans = sorted(glob(globstr))
syncdir = '/home/jagust/LBL/finalMRI'
logdir , _ = os.path.split(syncdir)
#set up log
cleantime = datetime.strftime(datetime.now(),'%Y-%m-%d-%H-%M')
logfile = os.path.join(logdir,'logs',
'%s%s.log'%(cleantime,__file__.replace('.py','')))
log_settings = utils.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
user = os.environ['USER']
logging.info('###START %s :::'%__file__)
logging.info('###USER : %s'%(user))
# find all subjecs raw scans
scans = mtr.glob('%s/B*/raw*.tgz'%(syncdir))
scans.sort()
for raw in scans[:]:
# meta data
logging.info(raw)
_, rawf = os.path.split(raw)
subid = mtr.get_subid(raw)
if subid is None:
logging.error('no subid in %s'%(raw))
continue
logging.info(subid)
visit_number = mtr.get_visit_number(raw)
# get estimate of series field and date
try:
