def _make_interval_tree(self, start_scan, end_scan):
reader = MSFileLoader(self.ms_file)
start_ix = reader.get_scan_by_id(start_scan).index
end_ix = reader.get_scan_by_id(end_scan).index
reader.reset()
index, interval_tree = build_scan_index(reader,
self.number_of_helpers + 1,
(start_ix, end_ix))
self._scan_interval_tree = interval_tree
def _make_interval_tree(self, start_scan, end_scan):
reader = MSFileLoader(self.ms_file)
if start_scan is not None:
start_ix = reader.get_scan_by_id(start_scan).index
else:
start_ix = 0
if end_scan is not None:
end_ix = reader.get_scan_by_id(end_scan).index
else:
end_ix = len(reader)
reader.reset()
index, interval_tree = build_scan_index(
reader, self.number_of_helpers + 1, (start_ix, end_ix))
self._scan_interval_tree = interval_tree
def _make_interval_tree(self, start_scan, end_scan):
reader = MSFileLoader(self.ms_file)
if start_scan is not None:
start_ix = reader.get_scan_by_id(start_scan).index
else:
start_ix = 0
if end_scan is not None:
end_ix = reader.get_scan_by_id(end_scan).index
else:
end_ix = len(reader)
reader.reset()
index, interval_tree = build_scan_index(reader,
self.number_of_helpers + 1,
(start_ix, end_ix))
self._scan_interval_tree = interval_tree
def _make_interval_tree(self, start_scan, end_scan):
reader = MSFileLoader(self.ms_file, decode_binary=False)
if start_scan is not None:
start_ix = reader.get_scan_by_id(start_scan).index
else:
start_ix = 0
if end_scan is not None:
end_ix = reader.get_scan_by_id(end_scan).index
else:
end_ix = len(reader)
reader.reset()
_index, interval_tree = build_scan_index(reader,
self.number_of_helpers + 1,
(start_ix, end_ix))
self._scan_interval_tree = interval_tree
self.log("RT Tree: %r" % (self._scan_interval_tree.rt_tree))
