def plot(self):
"""
plot the data
"""
if self.station is None:
return
s_index = np.where(self.ws_data.data['station'] == self.station)[0][0]
z_obj = mtz.Z(self.ws_data.data[s_index]['z_data'],
self.ws_data.data[s_index]['z_data_err']*\
self.ws_data.data[s_index]['z_err_map'],
1./self.ws_data.period_list)
period = self.ws_data.period_list
# need to make sure that resistivity and phase is computed
z_obj._compute_res_phase()
plt.rcParams['font.size'] = self.plot_settings.fs
fontdict = {'size': self.plot_settings.fs + 2, 'weight': 'bold'}
#--> make key word dictionaries for plotting
kw_xx = {
'color': self.plot_settings.cted,
'marker': self.plot_settings.mted,
'ms': self.plot_settings.ms,
'ls': ':',
'lw': self.plot_settings.lw,
'e_capsize': self.plot_settings.e_capsize,
'e_capthick': self.plot_settings.e_capthick,
'picker': 3
}
kw_yy = {
'color': self.plot_settings.ctmd,
'marker': self.plot_settings.mtmd,
'ms': self.plot_settings.ms,
'ls': ':',
'lw': self.plot_settings.lw,
'e_capsize': self.plot_settings.e_capsize,
'e_capthick': self.plot_settings.e_capthick,
'picker': 3
}
#convert to apparent resistivity and phase
if self.plot_z == True:
scaling = np.zeros_like(z_obj.z)
for ii in range(2):
for jj in range(2):
scaling[:, ii, jj] = 1. / np.sqrt(z_obj.freq)
plot_res = abs(z_obj.z.real * scaling)
plot_res_err = abs(z_obj.z_err * scaling)
plot_phase = abs(z_obj.z.imag * scaling)
plot_phase_err = abs(z_obj.z_err * scaling)
h_ratio = [1, 1]
elif self.plot_z == False:
plot_res = z_obj.resistivity
plot_res_err = z_obj.resistivity_err
plot_phase = z_obj.phase
plot_phase_err = z_obj.phase_err
h_ratio = [2, 1]
#find locations where points have been masked
nzxx = np.nonzero(z_obj.z[:, 0, 0])[0]
nzxy = np.nonzero(z_obj.z[:, 0, 1])[0]
nzyx = np.nonzero(z_obj.z[:, 1, 0])[0]
nzyy = np.nonzero(z_obj.z[:, 1, 1])[0]
self.figure.clf()
self.figure.suptitle(str(self.station), fontdict=fontdict)
#set the grid of subplots
gs = gridspec.GridSpec(2, 4, height_ratios=h_ratio)
gs.update(wspace=self.plot_settings.subplot_wspace,
left=self.plot_settings.subplot_left,
top=self.plot_settings.subplot_top,
bottom=self.plot_settings.subplot_bottom,
right=self.plot_settings.subplot_right,
hspace=self.plot_settings.subplot_hspace)
axrxx = self.figure.add_subplot(gs[0, 0])
axrxy = self.figure.add_subplot(gs[0, 1], sharex=axrxx)
axryx = self.figure.add_subplot(gs[0, 2], sharex=axrxx)
axryy = self.figure.add_subplot(gs[0, 3], sharex=axrxx)
axpxx = self.figure.add_subplot(gs[1, 0])
axpxy = self.figure.add_subplot(gs[1, 1], sharex=axrxx)
axpyx = self.figure.add_subplot(gs[1, 2], sharex=axrxx)
axpyy = self.figure.add_subplot(gs[1, 3], sharex=axrxx)
self.ax_list = [axrxx, axrxy, axryx, axryy, axpxx, axpxy, axpyx, axpyy]
# plot data response
erxx = mtplottools.plot_errorbar(axrxx, period[nzxx], plot_res[nzxx, 0,
0],
plot_res_err[nzxx, 0, 0], **kw_xx)
erxy = mtplottools.plot_errorbar(axrxy, period[nzxy], plot_res[nzxy, 0,
1],
plot_res_err[nzxy, 0, 1], **kw_xx)
eryx = mtplottools.plot_errorbar(axryx, period[nzyx], plot_res[nzyx, 1,
0],
plot_res_err[nzyx, 1, 0], **kw_yy)
eryy = mtplottools.plot_errorbar(axryy, period[nzyy], plot_res[nzyy, 1,
1],
plot_res_err[nzyy, 1, 1], **kw_yy)
#plot phase
epxx = mtplottools.plot_errorbar(axpxx, period[nzxx], plot_phase[nzxx,
0, 0],
plot_phase_err[nzxx, 0, 0], **kw_xx)
epxy = mtplottools.plot_errorbar(axpxy, period[nzxy], plot_phase[nzxy,
0, 1],
plot_phase_err[nzxy, 0, 1], **kw_xx)
epyx = mtplottools.plot_errorbar(axpyx, period[nzyx], plot_phase[nzyx,
1, 0],
plot_phase_err[nzyx, 1, 0], **kw_yy)
epyy = mtplottools.plot_errorbar(axpyy, period[nzyy], plot_phase[nzyy,
1, 1],
plot_phase_err[nzyy, 1, 1], **kw_yy)
#----------------------------------------------
# get error bar list for editing later
self._err_list = [[erxx[1][0], erxx[1][1], erxx[2][0]],
[erxy[1][0], erxy[1][1], erxy[2][0]],
[eryx[1][0], eryx[1][1], eryx[2][0]],
[eryy[1][0], eryy[1][1], eryy[2][0]]]
line_list = [[erxx[0]], [erxy[0]], [eryx[0]], [eryy[0]]]
#------------------------------------------
# make things look nice
# set titles of the Z components
label_list = [['$Z_{xx}$'], ['$Z_{xy}$'], ['$Z_{yx}$'], ['$Z_{yy}$']]
for ax, label in zip(self.ax_list[0:4], label_list):
ax.set_title(label[0],
fontdict={
'size': self.plot_settings.fs + 2,
'weight': 'bold'
})
#--> set limits if input
if self.plot_settings.res_xx_limits is not None:
axrxx.set_ylim(self.plot_settings.res_xx_limits)
if self.plot_settings.res_xy_limits is not None:
axrxy.set_ylim(self.plot_settings.res_xy_limits)
if self.plot_settings.res_yx_limits is not None:
axryx.set_ylim(self.plot_settings.res_yx_limits)
if self.plot_settings.res_yy_limits is not None:
axryy.set_ylim(self.plot_settings.res_yy_limits)
if self.plot_settings.phase_xx_limits is not None:
axpxx.set_ylim(self.plot_settings.phase_xx_limits)
if self.plot_settings.phase_xy_limits is not None:
axpxy.set_ylim(self.plot_settings.phase_xy_limits)
if self.plot_settings.phase_yx_limits is not None:
axpyx.set_ylim(self.plot_settings.phase_yx_limits)
if self.plot_settings.phase_yy_limits is not None:
axpyy.set_ylim(self.plot_settings.phase_yy_limits)
#set axis properties
for aa, ax in enumerate(self.ax_list):
ax.tick_params(axis='y', pad=self.plot_settings.ylabel_pad)
ylabels = ax.get_yticks().tolist()
if aa < 4:
ylabels[-1] = ''
ylabels[0] = ''
ax.set_yticklabels(ylabels)
plt.setp(ax.get_xticklabels(), visible=False)
if self.plot_z == True:
ax.set_yscale('log')
else:
ax.set_xlabel('Period (s)', fontdict=fontdict)
if aa < 4 and self.plot_z is False:
ax.set_yscale('log')
#set axes labels
if aa == 0:
if self.plot_z == False:
ax.set_ylabel('App. Res. ($\mathbf{\Omega \cdot m}$)',
fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel('Re[Z (mV/km nT)]', fontdict=fontdict)
elif aa == 4:
if self.plot_z == False:
ax.set_ylabel('Phase (deg)', fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel('Im[Z (mV/km nT)]', fontdict=fontdict)
ax.set_xscale('log')
ax.set_xlim(xmin=10**(np.floor(np.log10(period[0]))) * 1.01,
xmax=10**(np.ceil(np.log10(period[-1]))) * .99)
ax.grid(True, alpha=.25)
##----------------------------------------------
#plot model response
if self.ws_resp is not None:
s_index = np.where(
self.ws_resp.resp['station'] == self.station)[0][0]
resp_z_obj = mtz.Z(self.ws_resp.resp[s_index]['z_resp'], None,
1. / self.ws_resp.period_list)
resp_z_err = np.nan_to_num((z_obj.z - resp_z_obj.z) / z_obj.z_err)
resp_z_obj._compute_res_phase()
#convert to apparent resistivity and phase
if self.plot_z == True:
scaling = np.zeros_like(resp_z_obj.z)
for ii in range(2):
for jj in range(2):
scaling[:, ii, jj] = 1. / np.sqrt(resp_z_obj.freq)
r_plot_res = abs(resp_z_obj.z.real * scaling)
r_plot_phase = abs(resp_z_obj.z.imag * scaling)
elif self.plot_z == False:
r_plot_res = resp_z_obj.resistivity
r_plot_phase = resp_z_obj.phase
rms_xx = resp_z_err[:, 0, 0].std()
rms_xy = resp_z_err[:, 0, 1].std()
rms_yx = resp_z_err[:, 1, 0].std()
rms_yy = resp_z_err[:, 1, 1].std()
#--> make key word dictionaries for plotting
kw_xx = {
'color': self.plot_settings.ctem,
'marker': self.plot_settings.mtem,
'ms': self.plot_settings.ms,
'ls': ':',
'lw': self.plot_settings.lw,
'e_capsize': self.plot_settings.e_capsize,
'e_capthick': self.plot_settings.e_capthick
}
kw_yy = {
'color': self.plot_settings.ctmm,
'marker': self.plot_settings.mtmm,
'ms': self.plot_settings.ms,
'ls': ':',
'lw': self.plot_settings.lw,
'e_capsize': self.plot_settings.e_capsize,
'e_capthick': self.plot_settings.e_capthick
}
# plot data response
rerxx = mtplottools.plot_errorbar(axrxx, period[nzxx],
r_plot_res[nzxx, 0,
0], None, **kw_xx)
rerxy = mtplottools.plot_errorbar(axrxy, period[nzxy],
r_plot_res[nzxy, 0,
1], None, **kw_xx)
reryx = mtplottools.plot_errorbar(axryx, period[nzyx],
r_plot_res[nzyx, 1,
0], None, **kw_yy)
reryy = mtplottools.plot_errorbar(axryy, period[nzyy],
r_plot_res[nzyy, 1,
1], None, **kw_yy)
#plot phase
repxx = mtplottools.plot_errorbar(axpxx, period[nzxx],
r_plot_phase[nzxx, 0,
0], None, **kw_xx)
repxy = mtplottools.plot_errorbar(axpxy, period[nzxy],
r_plot_phase[nzxy, 0,
1], None, **kw_xx)
repyx = mtplottools.plot_errorbar(axpyx, period[nzyx],
r_plot_phase[nzyx, 1,
0], None, **kw_yy)
repyy = mtplottools.plot_errorbar(axpyy, period[nzyy],
r_plot_phase[nzyy, 1,
1], None, **kw_yy)
# add labels to legends
line_list[0] += [rerxx[0]]
line_list[1] += [rerxy[0]]
line_list[2] += [reryx[0]]
line_list[3] += [reryy[0]]
label_list[0] += ['$Z^m_{xx}$ ' + 'rms={0:.2f}'.format(rms_xx)]
label_list[1] += ['$Z^m_{xy}$ ' + 'rms={0:.2f}'.format(rms_xy)]
label_list[2] += ['$Z^m_{yx}$ ' + 'rms={0:.2f}'.format(rms_yx)]
label_list[3] += ['$Z^m_{yy}$ ' + 'rms={0:.2f}'.format(rms_yy)]
legend_ax_list = self.ax_list[0:4]
for aa, ax in enumerate(legend_ax_list):
ax.legend(
line_list[aa],
label_list[aa],
loc=self.plot_settings.legend_loc,
bbox_to_anchor=self.plot_settings.legend_pos,
markerscale=self.plot_settings.legend_marker_scale,
borderaxespad=self.plot_settings.legend_border_axes_pad,
labelspacing=self.plot_settings.legend_label_spacing,
handletextpad=self.plot_settings.legend_handle_text_pad,
borderpad=self.plot_settings.legend_border_pad,
prop={'size': max([self.plot_settings.fs, 5])})
self.mpl_widget.draw()
def plot(self):
"""
plot the data
"""
if self.station is None:
return
z_obj = self.modem_data.mt_dict[self.station].Z
t_obj = self.modem_data.mt_dict[self.station].Tipper
period = self.modem_data.period_list
# need to make sure that resistivity and phase is computed
z_obj.compute_resistivity_phase()
z_obj.compute_resistivity_phase()
plt.rcParams['font.size'] = self.plot_settings.fs
fontdict = {'size':self.plot_settings.fs+2, 'weight':'bold'}
#--> make key word dictionaries for plotting
kw_xx = {'color':self.plot_settings.cted,
'marker':self.plot_settings.mted,
'ms':self.plot_settings.ms,
'ls':':',
'lw':self.plot_settings.lw,
'e_capsize':self.plot_settings.e_capsize,
'e_capthick':self.plot_settings.e_capthick,
'picker':3}
kw_yy = {'color':self.plot_settings.ctmd,
'marker':self.plot_settings.mtmd,
'ms':self.plot_settings.ms,
'ls':':',
'lw':self.plot_settings.lw,
'e_capsize':self.plot_settings.e_capsize,
'e_capthick':self.plot_settings.e_capthick,
'picker':3}
#convert to apparent resistivity and phase
if self.plot_z == True:
scaling = np.zeros_like(z_obj.z)
for ii in range(2):
for jj in range(2):
scaling[:, ii, jj] = 1./np.sqrt(z_obj.freq)
plot_res = abs(z_obj.z.real*scaling)
plot_res_err = abs(z_obj.z_err*scaling)
plot_phase = abs(z_obj.z.imag*scaling)
plot_phase_err = abs(z_obj.z_err*scaling)
h_ratio = [1, 1, .5]
elif self.plot_z == False:
plot_res = z_obj.resistivity
plot_res_err = z_obj.resistivity_err
plot_phase = z_obj.phase
plot_phase_err = z_obj.phase_err
h_ratio = [1.5, 1, .5]
#find locations where points have been masked
nzxx = np.nonzero(z_obj.z[:, 0, 0])[0]
nzxy = np.nonzero(z_obj.z[:, 0, 1])[0]
nzyx = np.nonzero(z_obj.z[:, 1, 0])[0]
nzyy = np.nonzero(z_obj.z[:, 1, 1])[0]
ntx = np.nonzero(t_obj.tipper[:, 0, 0])[0]
nty = np.nonzero(t_obj.tipper[:, 0, 1])[0]
self.figure.clf()
self.figure.suptitle(str(self.station), fontdict=fontdict)
#set the grid of subplots
if np.all(t_obj.tipper == 0.0) == True:
self.plot_tipper = False
else:
self.plot_tipper = True
gs = gridspec.GridSpec(3, 4, height_ratios=h_ratio)
gs.update(wspace=self.plot_settings.subplot_wspace,
left=self.plot_settings.subplot_left,
top=self.plot_settings.subplot_top,
bottom=self.plot_settings.subplot_bottom,
right=self.plot_settings.subplot_right,
hspace=self.plot_settings.subplot_hspace)
axrxx = self.figure.add_subplot(gs[0, 0])
axrxy = self.figure.add_subplot(gs[0, 1], sharex=axrxx)
axryx = self.figure.add_subplot(gs[0, 2], sharex=axrxx)
axryy = self.figure.add_subplot(gs[0, 3], sharex=axrxx)
axpxx = self.figure.add_subplot(gs[1, 0])
axpxy = self.figure.add_subplot(gs[1, 1], sharex=axrxx)
axpyx = self.figure.add_subplot(gs[1, 2], sharex=axrxx)
axpyy = self.figure.add_subplot(gs[1, 3], sharex=axrxx)
axtxr = self.figure.add_subplot(gs[2, 0], sharex=axrxx)
axtxi = self.figure.add_subplot(gs[2, 1], sharex=axrxx)
axtyr = self.figure.add_subplot(gs[2, 2], sharex=axrxx)
axtyi = self.figure.add_subplot(gs[2, 3], sharex=axrxx)
self.ax_list = [axrxx, axrxy, axryx, axryy,
axpxx, axpxy, axpyx, axpyy,
axtxr, axtxi, axtyr, axtyi]
# plot data response
erxx = mtplottools.plot_errorbar(axrxx,
period[nzxx],
plot_res[nzxx, 0, 0],
plot_res_err[nzxx, 0, 0],
**kw_xx)
erxy = mtplottools.plot_errorbar(axrxy,
period[nzxy],
plot_res[nzxy, 0, 1],
plot_res_err[nzxy, 0, 1],
**kw_xx)
eryx = mtplottools.plot_errorbar(axryx,
period[nzyx],
plot_res[nzyx, 1, 0],
plot_res_err[nzyx, 1, 0],
**kw_yy)
eryy = mtplottools.plot_errorbar(axryy,
period[nzyy],
plot_res[nzyy, 1, 1],
plot_res_err[nzyy, 1, 1],
**kw_yy)
#plot phase
epxx = mtplottools.plot_errorbar(axpxx,
period[nzxx],
plot_phase[nzxx, 0, 0],
plot_phase_err[nzxx, 0, 0],
**kw_xx)
epxy = mtplottools.plot_errorbar(axpxy,
period[nzxy],
plot_phase[nzxy, 0, 1],
plot_phase_err[nzxy, 0, 1],
**kw_xx)
epyx = mtplottools.plot_errorbar(axpyx,
period[nzyx],
plot_phase[nzyx, 1, 0],
plot_phase_err[nzyx, 1, 0],
**kw_yy)
epyy = mtplottools.plot_errorbar(axpyy,
period[nzyy],
plot_phase[nzyy, 1, 1],
plot_phase_err[nzyy, 1, 1],
**kw_yy)
#plot tipper
if self.plot_tipper == True:
ertx = mtplottools.plot_errorbar(axtxr,
period[ntx],
t_obj.tipper[ntx, 0, 0].real,
t_obj.tipper_err[ntx, 0, 0],
**kw_xx)
erty = mtplottools.plot_errorbar(axtyr,
period[nty],
t_obj.tipper[nty, 0, 1].real,
t_obj.tipper_err[nty, 0, 1],
**kw_yy)
eptx = mtplottools.plot_errorbar(axtxi,
period[ntx],
t_obj.tipper[ntx, 0, 0].imag,
t_obj.tipper_err[ntx, 0, 0],
**kw_xx)
epty = mtplottools.plot_errorbar(axtyi,
period[nty],
t_obj.tipper[nty, 0, 1].imag,
t_obj.tipper_err[nty, 0, 1],
**kw_yy)
#----------------------------------------------
# get error bar list for editing later
if self.plot_tipper == False:
try:
self._err_list = [[erxx[1][0], erxx[1][1], erxx[2][0]],
[erxy[1][0], erxy[1][1], erxy[2][0]],
[eryx[1][0], eryx[1][1], eryx[2][0]],
[eryy[1][0], eryy[1][1], eryy[2][0]],
[epxx[1][0], epxx[1][1], epxx[2][0]],
[epxy[1][0], epxy[1][1], epxy[2][0]],
[epyx[1][0], epyx[1][1], epyx[2][0]],
[epyy[1][0], epyy[1][1], epyy[2][0]]]
line_list = [[erxx[0]], [erxy[0]], [eryx[0]], [eryy[0]]]
except IndexError:
print 'Found no Z components for {0}'.format(self.station)
line_list = [[None], [None],
[None], [None]]
self._err_list = [[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None]]
else:
try:
line_list = [[erxx[0]], [erxy[0]],
[eryx[0]], [eryy[0]],
[ertx[0]], [erty[0]]]
self._err_list = [[erxx[1][0], erxx[1][1], erxx[2][0]],
[erxy[1][0], erxy[1][1], erxy[2][0]],
[eryx[1][0], eryx[1][1], eryx[2][0]],
[eryy[1][0], eryy[1][1], eryy[2][0]],
[epxx[1][0], epxx[1][1], epxx[2][0]],
[epxy[1][0], epxy[1][1], epxy[2][0]],
[epyx[1][0], epyx[1][1], epyx[2][0]],
[epyy[1][0], epyy[1][1], epyy[2][0]],
[ertx[1][0], ertx[1][1], ertx[2][0]],
[eptx[1][0], eptx[1][1], eptx[2][0]],
[erty[1][0], erty[1][1], erty[2][0]],
[epty[1][0], epty[1][1], epty[2][0]]]
except IndexError:
print 'Found no Z components for {0}'.format(self.station)
line_list = [[None], [None],
[None], [None],
[None], [None]]
self._err_list = [[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None],
[None, None, None]]
#------------------------------------------
# make things look nice
# set titles of the Z components
label_list = [['$Z_{xx}$'], ['$Z_{xy}$'],
['$Z_{yx}$'], ['$Z_{yy}$']]
for ax, label in zip(self.ax_list[0:4], label_list):
ax.set_title(label[0],fontdict={'size':self.plot_settings.fs+2,
'weight':'bold'})
# set legends for tipper components
# fake a line
l1 = plt.Line2D([0], [0], linewidth=0, color='w', linestyle='None',
marker='.')
t_label_list = ['Re{$T_x$}', 'Im{$T_x$}', 'Re{$T_y$}', 'Im{$T_y$}']
label_list += [['$T_{x}$'], ['$T_{y}$']]
for ax, label in zip(self.ax_list[-4:], t_label_list):
ax.legend([l1], [label], loc='upper left',
markerscale=.01,
borderaxespad=.05,
labelspacing=.01,
handletextpad=.05,
borderpad=.05,
prop={'size':max([self.plot_settings.fs, 5])})
#--> set limits if input
if self.plot_settings.res_xx_limits is not None:
axrxx.set_ylim(self.plot_settings.res_xx_limits)
if self.plot_settings.res_xy_limits is not None:
axrxy.set_ylim(self.plot_settings.res_xy_limits)
if self.plot_settings.res_yx_limits is not None:
axryx.set_ylim(self.plot_settings.res_yx_limits)
if self.plot_settings.res_yy_limits is not None:
axryy.set_ylim(self.plot_settings.res_yy_limits)
if self.plot_settings.phase_xx_limits is not None:
axpxx.set_ylim(self.plot_settings.phase_xx_limits)
if self.plot_settings.phase_xy_limits is not None:
axpxy.set_ylim(self.plot_settings.phase_xy_limits)
if self.plot_settings.phase_yx_limits is not None:
axpyx.set_ylim(self.plot_settings.phase_yx_limits)
if self.plot_settings.phase_yy_limits is not None:
axpyy.set_ylim(self.plot_settings.phase_yy_limits)
#set axis properties
for aa, ax in enumerate(self.ax_list):
ax.tick_params(axis='y', pad=self.plot_settings.ylabel_pad)
ylabels = ax.get_yticks().tolist()
if aa < 8:
ylabels[-1] = ''
ylabels[0] = ''
ax.set_yticklabels(ylabels)
plt.setp(ax.get_xticklabels(), visible=False)
if self.plot_z == True:
ax.set_yscale('log', nonposy='clip')
else:
ax.set_xlabel('Period (s)', fontdict=fontdict)
if aa < 4 and self.plot_z is False:
ax.set_yscale('log', nonposy='clip')
#set axes labels
if aa == 0:
if self.plot_z == False:
ax.set_ylabel('App. Res. ($\mathbf{\Omega \cdot m}$)',
fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel('Re[Z (mV/km nT)]',
fontdict=fontdict)
elif aa == 4:
if self.plot_z == False:
ax.set_ylabel('Phase (deg)',
fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel('Im[Z (mV/km nT)]',
fontdict=fontdict)
elif aa == 8:
ax.set_ylabel('Tipper',
fontdict=fontdict)
if aa > 7:
if self.plot_settings.tipper_limits is not None:
ax.set_ylim(self.plot_settings.tipper_limits)
else:
pass
ax.set_xscale('log', nonposx='clip')
ax.set_xlim(xmin=10**(np.floor(np.log10(period[0])))*1.01,
xmax=10**(np.ceil(np.log10(period[-1])))*.99)
ax.grid(True, alpha=.25)
##----------------------------------------------
#plot model response
if self.modem_resp is not None:
resp_z_obj = self.modem_resp.mt_dict[self.station].Z
resp_z_err = np.nan_to_num((z_obj.z-resp_z_obj.z)/z_obj.z_err)
resp_z_obj.compute_resistivity_phase()
resp_t_obj = self.modem_resp.mt_dict[self.station].Tipper
resp_t_err = np.nan_to_num((t_obj.tipper-resp_t_obj.tipper)/t_obj.tipper_err)
#convert to apparent resistivity and phase
if self.plot_z == True:
scaling = np.zeros_like(resp_z_obj.z)
for ii in range(2):
for jj in range(2):
scaling[:, ii, jj] = 1./np.sqrt(resp_z_obj.freq)
r_plot_res = abs(resp_z_obj.z.real*scaling)
r_plot_phase = abs(resp_z_obj.z.imag*scaling)
elif self.plot_z == False:
r_plot_res = resp_z_obj.resistivity
r_plot_phase = resp_z_obj.phase
rms_xx = resp_z_err[nzxx, 0, 0].std()
rms_xy = resp_z_err[nzxy, 0, 1].std()
rms_yx = resp_z_err[nzyx, 1, 0].std()
rms_yy = resp_z_err[nzyy, 1, 1].std()
#--> make key word dictionaries for plotting
kw_xx = {'color':self.plot_settings.ctem,
'marker':self.plot_settings.mtem,
'ms':self.plot_settings.ms,
'ls':':',
'lw':self.plot_settings.lw,
'e_capsize':self.plot_settings.e_capsize,
'e_capthick':self.plot_settings.e_capthick}
kw_yy = {'color':self.plot_settings.ctmm,
'marker':self.plot_settings.mtmm,
'ms':self.plot_settings.ms,
'ls':':',
'lw':self.plot_settings.lw,
'e_capsize':self.plot_settings.e_capsize,
'e_capthick':self.plot_settings.e_capthick}
# plot data response
rerxx = mtplottools.plot_errorbar(axrxx,
period[nzxx],
r_plot_res[nzxx, 0, 0],
None,
**kw_xx)
rerxy = mtplottools.plot_errorbar(axrxy,
period[nzxy],
r_plot_res[nzxy, 0, 1],
None,
**kw_xx)
reryx = mtplottools.plot_errorbar(axryx,
period[nzyx],
r_plot_res[nzyx, 1, 0],
None,
**kw_yy)
reryy = mtplottools.plot_errorbar(axryy,
period[nzyy],
r_plot_res[nzyy, 1, 1],
None,
**kw_yy)
#plot phase
repxx = mtplottools.plot_errorbar(axpxx,
period[nzxx],
r_plot_phase[nzxx, 0, 0],
None,
**kw_xx)
repxy = mtplottools.plot_errorbar(axpxy,
period[nzxy],
r_plot_phase[nzxy, 0, 1],
None,
**kw_xx)
repyx = mtplottools.plot_errorbar(axpyx,
period[nzyx],
r_plot_phase[nzyx, 1, 0],
None,
**kw_yy)
repyy = mtplottools.plot_errorbar(axpyy,
period[nzyy],
r_plot_phase[nzyy, 1, 1],
None,
**kw_yy)
#plot tipper
if self.plot_tipper == True:
rertx = mtplottools.plot_errorbar(axtxr,
period[ntx],
resp_t_obj.tipper[ntx, 0, 0].real,
None,
**kw_xx)
rerty = mtplottools.plot_errorbar(axtyr,
period[nty],
resp_t_obj.tipper[nty, 0, 1].real,
None,
**kw_yy)
reptx = mtplottools.plot_errorbar(axtxi,
period[ntx],
resp_t_obj.tipper[ntx, 0, 0].imag,
None,
**kw_xx)
repty = mtplottools.plot_errorbar(axtyi,
period[nty],
resp_t_obj.tipper[nty, 0, 1].imag,
None,
**kw_yy)
if self.plot_tipper == False:
line_list[0] += [rerxx[0]]
line_list[1] += [rerxy[0]]
line_list[2] += [reryx[0]]
line_list[3] += [reryy[0]]
label_list[0] += ['$Z^m_{xx}$ '+
'rms={0:.2f}'.format(rms_xx)]
label_list[1] += ['$Z^m_{xy}$ '+
'rms={0:.2f}'.format(rms_xy)]
label_list[2] += ['$Z^m_{yx}$ '+
'rms={0:.2f}'.format(rms_yx)]
label_list[3] += ['$Z^m_{yy}$ '+
'rms={0:.2f}'.format(rms_yy)]
else:
line_list[0] += [rerxx[0]]
line_list[1] += [rerxy[0]]
line_list[2] += [reryx[0]]
line_list[3] += [reryy[0]]
line_list[4] += [rertx[0]]
line_list[5] += [rerty[0]]
label_list[0] += ['$Z^m_{xx}$ '+
'rms={0:.2f}'.format(rms_xx)]
label_list[1] += ['$Z^m_{xy}$ '+
'rms={0:.2f}'.format(rms_xy)]
label_list[2] += ['$Z^m_{yx}$ '+
'rms={0:.2f}'.format(rms_yx)]
label_list[3] += ['$Z^m_{yy}$ '+
'rms={0:.2f}'.format(rms_yy)]
label_list[4] += ['$T^m_{x}$ '+
'rms={0:.2f}'.format(resp_t_err[ntx, 0, 0].std())]
label_list[5] += ['$T^m_{y}$'+
'rms={0:.2f}'.format(resp_t_err[nty, 0, 1].std())]
legend_ax_list = self.ax_list[0:4]
if self.plot_tipper == True:
legend_ax_list += [self.ax_list[-4], self.ax_list[-2]]
for aa, ax in enumerate(legend_ax_list):
ax.legend(line_list[aa],
label_list[aa],
loc=self.plot_settings.legend_loc,
bbox_to_anchor=self.plot_settings.legend_pos,
markerscale=self.plot_settings.legend_marker_scale,
borderaxespad=self.plot_settings.legend_border_axes_pad,
labelspacing=self.plot_settings.legend_label_spacing,
handletextpad=self.plot_settings.legend_handle_text_pad,
borderpad=self.plot_settings.legend_border_pad,
prop={'size':max([self.plot_settings.fs, 5])})
self.mpl_widget.draw()
# color=(0, 0.85, 0),
# marker='s',
# ms=5)
# l4 = mtplt.plot_errorbar(ax,
# 1./b_arr['freq'],
# sps.medfilt(b_arr['azimuth']-p_arr['azimuth'],
# ks),
# y_error=b_arr['azimuth_err']+p_arr['azimuth_err'],
# color=(0.85, 0.85, 0),
# marker='s',
# ms=5)
l1 = mtplt.plot_errorbar(
ax,
1.0 / b_arr["freq"],
b_arr["phimin"],
y_error=b_arr["phimin_err"],
color="k",
marker="s",
ms=5,
)
l2 = mtplt.plot_errorbar(
ax,
1.0 / p_arr["freq"],
p_arr["phimin"],
y_error=p_arr["phimin_err"],
color=(0, 0, 0.85),
marker="v",
ms=5,
)
l3 = mtplt.plot_errorbar(
def plot(self):
"""
plot the data
"""
if self.station is None:
return
z_obj = self.modem_data.mt_dict[self.station].Z
t_obj = self.modem_data.mt_dict[self.station].Tipper
period = self.modem_data.period_list
plt.rcParams["font.size"] = self.fs
fontdict = {"size": self.fs + 2, "weight": "bold"}
# --> make key word dictionaries for plotting
kw_xx = {
"color": self.cted,
"marker": self.mted,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_yy = {
"color": self.ctmd,
"marker": self.mtmd,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_tr = {
"color": self.ctrd,
"marker": self.mtmd,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_ti = {
"color": self.ctid,
"marker": self.mtmd,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
# convert to apparent resistivity and phase
rp = mtplottools.ResPhase(z_object=z_obj)
# find locations where points have been masked
nzxx = np.nonzero(z_obj.z[:, 0, 0])[0]
nzxy = np.nonzero(z_obj.z[:, 0, 1])[0]
nzyx = np.nonzero(z_obj.z[:, 1, 0])[0]
nzyy = np.nonzero(z_obj.z[:, 1, 1])[0]
ntx = np.nonzero(t_obj.tipper[:, 0, 0])[0]
nty = np.nonzero(t_obj.tipper[:, 0, 1])[0]
self.figure.clf()
self.figure.suptitle(str(self.station), fontdict=fontdict)
# set the grid of subplots
gs = gridspec.GridSpec(
3,
2,
wspace=self.subplot_wspace,
left=self.subplot_left,
top=self.subplot_top,
bottom=self.subplot_bottom,
right=self.subplot_right,
hspace=self.subplot_hspace,
height_ratios=[1, 1, 0.4],
)
# od for off diagonal components, d for diagonal
axrod = self.figure.add_subplot(gs[0, 0])
axrd = self.figure.add_subplot(gs[0, 1], sharex=axrod)
axpod = self.figure.add_subplot(gs[1, 0])
axpd = self.figure.add_subplot(gs[1, 1], sharex=axrod)
axtx = self.figure.add_subplot(gs[2, 0], sharex=axrod)
axty = self.figure.add_subplot(gs[2, 1], sharex=axrod)
if self.plot_z == False:
# plot resistivity
erxx = mtplottools.plot_errorbar(axrd, period[nzxx], rp.resxx[nzxx], rp.resxx_err[nzxx], **kw_xx)
erxy = mtplottools.plot_errorbar(axrod, period[nzxy], rp.resxy[nzxy], rp.resxy_err[nzxy], **kw_xx)
eryx = mtplottools.plot_errorbar(axrod, period[nzyx], rp.resyx[nzyx], rp.resyx_err[nzyx], **kw_yy)
eryy = mtplottools.plot_errorbar(axrd, period[nzyy], rp.resyy[nzyy], rp.resyy_err[nzyy], **kw_yy)
# plot phase
erxx = mtplottools.plot_errorbar(axpd, period[nzxx], rp.phasexx[nzxx], rp.phasexx_err[nzxx], **kw_xx)
erxy = mtplottools.plot_errorbar(axpod, period[nzxy], rp.phasexy[nzxy], rp.phasexy_err[nzxy], **kw_xx)
eryx = mtplottools.plot_errorbar(axpod, period[nzyx], rp.phaseyx[nzyx], rp.phaseyx_err[nzyx], **kw_yy)
eryy = mtplottools.plot_errorbar(axpd, period[nzyy], rp.phaseyy[nzyy], rp.phaseyy_err[nzyy], **kw_yy)
elif self.plot_z == True:
# plot real
erxx = mtplottools.plot_errorbar(
axrd, period[nzxx], z_obj.z[nzxx, 0, 0].real, z_obj.z_err[nzxx, 0, 0].real, **kw_xx
)
erxy = mtplottools.plot_errorbar(
axrod, period[nzxy], z_obj.z[nzxy, 0, 1].real, z_obj.z_err[nzxy, 0, 1].real, **kw_xx
)
eryx = mtplottools.plot_errorbar(
axrod, period[nzyx], z_obj.z[nzyx, 1, 0].real, z_obj.z_err[nzyx, 1, 0].real, **kw_yy
)
eryy = mtplottools.plot_errorbar(
axrd, period[nzyy], z_obj.z[nzyy, 1, 1].real, z_obj.z_err[nzyy, 1, 1].real, **kw_yy
)
# plot phase
erxx = mtplottools.plot_errorbar(
axpd, period[nzxx], z_obj.z[nzxx, 0, 0].imag, z_obj.z_err[nzxx, 0, 0].real, **kw_xx
)
erxy = mtplottools.plot_errorbar(
axpod, period[nzxy], z_obj.z[nzxy, 0, 1].imag, z_obj.z_err[nzxy, 0, 1].real, **kw_xx
)
eryx = mtplottools.plot_errorbar(
axpod, period[nzyx], z_obj.z[nzyx, 1, 0].imag, z_obj.z_err[nzyx, 1, 0].real, **kw_yy
)
eryy = mtplottools.plot_errorbar(
axpd, period[nzyy], z_obj.z[nzyy, 1, 1].imag, z_obj.z_err[nzyy, 1, 1].real, **kw_yy
)
# plot tipper
ertxr = mtplottools.plot_errorbar(
axtx, period[ntx], t_obj.tipper[ntx, 0, 0].real, t_obj.tipper_err[ntx, 0, 0], **kw_tr
)
ertxi = mtplottools.plot_errorbar(
axtx, period[ntx], t_obj.tipper[ntx, 0, 0].imag, t_obj.tipper_err[ntx, 0, 1], **kw_ti
)
ertyr = mtplottools.plot_errorbar(
axty, period[nty], t_obj.tipper[nty, 0, 1].real, t_obj.tipper_err[nty, 0, 0], **kw_tr
)
ertyi = mtplottools.plot_errorbar(
axty, period[nty], t_obj.tipper[nty, 0, 1].imag, t_obj.tipper_err[nty, 0, 1], **kw_ti
)
ax_list = [axrod, axrd, axpod, axpd, axtx, axty]
od_line_list = [erxy[0], eryx[0], ertxr[0], ertxi[0]]
d_line_list = [erxx[0], eryy[0], ertyr[0], ertyi[0]]
od_label_list = ["$Z_{xy}$", "$Z_{yx}$", "Re{$T_{x}$}", "Im{$T_{x}$}"]
d_label_list = ["$Z_{xx}$", "$Z_{yy}$", "Re{$T_{y}$}", "Im{$T_{y}$}"]
# --> set limits if input
if self.res_xx_limits is not None:
axrd.set_ylim(self.res_xx_limits)
if self.res_xy_limits is not None:
axrod.set_ylim(self.res_xy_limits)
if self.phase_xx_limits is not None:
axpd.set_ylim(self.phase_xx_limits)
if self.phase_xy_limits is not None:
axpod.set_ylim(self.phase_xy_limits)
# axtx.set_ylim((-1.1, 1.1))
# axty.set_ylim((-1.1, 1.1))
# set axis properties
for aa, ax in enumerate(ax_list):
ax.tick_params(axis="y", pad=self.ylabel_pad)
ylabels = ax.get_yticks().tolist()
if aa == 2 or aa == 3 or aa == 4 or aa == 5:
ylabels[-1] = ""
ylabels[0] = ""
ax.set_yticklabels(ylabels)
if aa < 2:
if self.plot_z == False:
ax.set_yscale("log")
if aa < 4:
plt.setp(ax.get_xticklabels(), visible=False)
else:
ax.set_xlabel("Period (s)", fontdict=fontdict)
# set axes labels
if aa == 0:
if self.plot_z == False:
ax.set_ylabel("App. Res. ($\mathbf{\Omega \cdot m}$)", fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel("Re[Z (mV/km nT)]", fontdict=fontdict)
ax.legend(
od_line_list,
od_label_list,
loc=self.legend_loc,
ncol=2,
bbox_to_anchor=self.legend_pos,
markerscale=self.legend_marker_scale,
borderaxespad=self.legend_border_axes_pad,
labelspacing=self.legend_label_spacing,
handletextpad=self.legend_handle_text_pad,
borderpad=self.legend_border_pad,
prop={"size": max([self.fs - 1, 5])},
)
elif aa == 1:
ax.legend(
d_line_list,
d_label_list,
loc=self.legend_loc,
ncol=2,
bbox_to_anchor=self.legend_pos,
markerscale=self.legend_marker_scale,
borderaxespad=self.legend_border_axes_pad,
labelspacing=self.legend_label_spacing,
handletextpad=self.legend_handle_text_pad,
borderpad=self.legend_border_pad,
prop={"size": max([self.fs - 1, 5])},
)
elif aa == 2:
if self.plot_z == False:
ax.set_ylabel("Phase (deg)", fontdict=fontdict)
elif self.plot_z == True:
ax.set_ylabel("Im[Z (mV/km nT)]", fontdict=fontdict)
elif aa == 4:
ax.set_ylabel(r"W$_x$", fontdict=fontdict)
elif aa == 5:
ax.set_ylabel(r"W$_y$", fontdict=fontdict)
ax.set_xscale("log")
ax.set_xlim(
xmin=10 ** (np.floor(np.log10(period[0]))) * 1.01, xmax=10 ** (np.ceil(np.log10(period[-1]))) * 0.99
)
ax.grid(True, alpha=0.25)
# plot model response
if self.modem_resp is not None:
resp_z_obj = self.modem_resp.mt_dict[self.station].Z
resp_z_err = np.nan_to_num((z_obj.z - resp_z_obj.z) / z_obj.z_err)
resp_t_obj = self.modem_resp.mt_dict[self.station].Tipper
rrp = mtplottools.ResPhase(resp_z_obj)
rms = resp_z_err.std()
rms_xx = resp_z_err[:, 0, 0].std()
rms_xy = resp_z_err[:, 0, 1].std()
rms_yx = resp_z_err[:, 1, 0].std()
rms_yy = resp_z_err[:, 1, 1].std()
# --> make key word dictionaries for plotting
kw_xx = {
"color": self.ctem,
"marker": self.mtem,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_yy = {
"color": self.ctmm,
"marker": self.mtmm,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_tr = {
"color": self.ctrm,
"marker": self.mtmd,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
kw_ti = {
"color": self.ctim,
"marker": self.mtmd,
"ms": self.ms,
"ls": ":",
"lw": self.lw,
"e_capsize": self.e_capsize,
"e_capthick": self.e_capthick,
}
if self.plot_z == False:
# plot resistivity
rerxx = mtplottools.plot_errorbar(axrd, period[nzxx], rrp.resxx[nzxx], **kw_xx)
rerxy = mtplottools.plot_errorbar(axrod, period[nzxy], rrp.resxy[nzxy], **kw_xx)
reryx = mtplottools.plot_errorbar(axrod, period[nzyx], rrp.resyx[nzyx], **kw_yy)
reryy = mtplottools.plot_errorbar(axrd, period[nzyy], rrp.resyy[nzyy], **kw_yy)
# plot phase
rerxx = mtplottools.plot_errorbar(axpd, period[nzxx], rrp.phasexx[nzxx], **kw_xx)
rerxy = mtplottools.plot_errorbar(axpod, period[nzxy], rrp.phasexy[nzxy], **kw_xx)
reryx = mtplottools.plot_errorbar(axpod, period[nzyx], rrp.phaseyx[nzyx], **kw_yy)
reryy = mtplottools.plot_errorbar(axpd, period[nzyy], rrp.phaseyy[nzyy], **kw_yy)
elif self.plot_z == True:
# plot real
rerxx = mtplottools.plot_errorbar(axrd, period[nzxx], resp_z_obj.z[nzxx, 0, 0].real, **kw_xx)
rerxy = mtplottools.plot_errorbar(axrod, period[nzxy], resp_z_obj.z[nzxy, 0, 1].real, **kw_xx)
reryx = mtplottools.plot_errorbar(axrod, period[nzyx], resp_z_obj.z[nzyx, 1, 0].real, **kw_yy)
reryy = mtplottools.plot_errorbar(axrd, period[nzyy], resp_z_obj.z[nzyy, 1, 1].real, **kw_yy)
# plot phase
rerxx = mtplottools.plot_errorbar(axpd, period[nzxx], resp_z_obj.z[nzxx, 0, 0].imag, **kw_xx)
rerxy = mtplottools.plot_errorbar(axpod, period[nzxy], resp_z_obj.z[nzxy, 0, 1].imag, **kw_xx)
reryx = mtplottools.plot_errorbar(axpod, period[nzyx], resp_z_obj.z[nzyx, 1, 0].imag, **kw_yy)
reryy = mtplottools.plot_errorbar(axpd, period[nzyy], resp_z_obj.z[nzyy, 1, 1].imag, **kw_yy)
rertx = mtplottools.plot_errorbar(axtx, period[ntx], resp_t_obj.tipper[ntx, 0, 0].real, **kw_tr)
rerty = mtplottools.plot_errorbar(axtx, period[ntx], resp_t_obj.tipper[ntx, 0, 1].imag, **kw_ti)
rertx = mtplottools.plot_errorbar(axty, period[nty], resp_t_obj.tipper[nty, 0, 0].real, **kw_tr)
rerty = mtplottools.plot_errorbar(axty, period[nty], resp_t_obj.tipper[nty, 0, 1].imag, **kw_ti)
# add laines and labels
od_line_list += [rerxy[0], reryx[0], rertx[0], rerty[0]]
d_line_list += [rerxx[0], reryy[0], rertx[0], rerty[0]]
od_label_list += [
"$Z^m_{xy}$" + "rms={0:.2f}".format(rms_xy),
"$Z^m_{yx}$" + "rms={0:.2f}".format(rms_yx),
"Re{$T^m_{x}$}",
"Im{$T^m_{x}$}",
]
d_label_list += [
"$Z^m_{xx}$" + "rms={0:.2f}".format(rms_xx),
"$Z^m_{yy}$" + "rms={0:.2f}".format(rms_yy),
"Re{$T^m_{x}$}",
"Im{$T^m_{x}$}",
]
legend_ax_list = [axrod, axrd]
od_label_list = od_label_list[0:2] + od_label_list[4:6] + od_label_list[2:4] + od_label_list[6:8]
d_label_list = d_label_list[0:2] + d_label_list[4:6] + d_label_list[2:4] + d_label_list[6:8]
od_line_list = od_line_list[0:2] + od_line_list[4:6] + od_line_list[2:4] + od_line_list[6:8]
d_line_list = d_line_list[0:2] + d_line_list[4:6] + d_line_list[2:4] + d_line_list[6:8]
legend_ll = [od_line_list, d_line_list]
legend_tl = [od_label_list, d_label_list]
for ax, ll, tl in zip(legend_ax_list, legend_ll, legend_tl):
ax.legend(
ll,
tl,
loc=self.legend_loc,
ncol=4,
bbox_to_anchor=self.legend_pos,
markerscale=self.legend_marker_scale,
borderaxespad=self.legend_border_axes_pad,
labelspacing=self.legend_label_spacing,
handletextpad=self.legend_handle_text_pad,
borderpad=self.legend_border_pad,
prop={"size": max([self.fs - 1, 5])},
)
self.mpl_widget.draw()
# ks),
# color=(0, 0.85, 0),
# marker='s',
# ms=5)
# l4 = mtplt.plot_errorbar(ax,
# 1./b_arr['freq'],
# sps.medfilt(b_arr['azimuth']-p_arr['azimuth'],
# ks),
# y_error=b_arr['azimuth_err']+p_arr['azimuth_err'],
# color=(0.85, 0.85, 0),
# marker='s',
# ms=5)
l1 = mtplt.plot_errorbar(ax,
1. / b_arr['freq'],
b_arr['phimin'],
y_error=b_arr['phimin_err'],
color='k',
marker='s',
ms=5)
l2 = mtplt.plot_errorbar(ax,
1. / p_arr['freq'],
p_arr['phimin'],
y_error=p_arr['phimin_err'],
color=(0, 0, .85),
marker='v',
ms=5)
l3 = mtplt.plot_errorbar(ax,
1. / b_arr['freq'],
b_arr['phimax'],
y_error=b_arr['phimax_err'],