def test_vrt_file_system_get():
parameters = {
'path_to_vrt_file': PATH_TO_NON_EXISTENT_VRT_FILE,
'encapsulated_data_type': DataTypeConstants.ASTER,
'accessed_file_system': 'LocalFileSystem',
'path': './test/test_data/',
'pattern': '/dt/'
}
file_system = VrtFileSystemAccessor.create_from_parameters(parameters)
try:
data_set_meta_info = DataSetMetaInfo('of no concern here', None, None,
DataTypeConstants.ASTER,
PATH_TO_NON_EXISTENT_VRT_FILE,
'ASTGTM2_N36W005_dem.tif')
file_refs = file_system.get(data_set_meta_info)
assert 1 == len(file_refs)
assert PATH_TO_NON_EXISTENT_VRT_FILE == file_refs[0].url
assert file_refs[0].start_time is None
assert file_refs[0].end_time is None
assert 'x-world/x-vrt' == file_refs[0].mime_type
assert os.path.exists(PATH_TO_NON_EXISTENT_VRT_FILE)
finally:
if os.path.exists(PATH_TO_NON_EXISTENT_VRT_FILE):
os.remove(PATH_TO_NON_EXISTENT_VRT_FILE)
def _get_data_set_meta_infos_for_tile_description(
self, tile_description: TileDescription, start_time: datetime,
end_time: datetime) -> List[DataSetMetaInfo]:
data_set_meta_infos = []
current_time = start_time
while current_time < end_time:
aws_index = 0
while aws_index >= 0:
id = _ID_PATTERN.format(tile_description.tile_id[0:2],
tile_description.tile_id[2:3],
tile_description.tile_id[3:5],
current_time.year, current_time.month,
current_time.day, aws_index)
tile_info_url = _AWS_BASE_TILE_INFO_URL.format(id)
request = requests.get(tile_info_url)
if request.status_code == 200:
time = json.loads(request.text)['timestamp'][:-5]
data_set_meta_infos.append(
DataSetMetaInfo(tile_description.coverage, time, time,
DataTypeConstants.AWS_S2_L1C, id))
aws_index += 1
else:
aws_index = -1
current_time += timedelta(days=1)
return data_set_meta_infos
def _create_data_set_meta_info(self, path: str, manifest_file):
manifest = XML(manifest_file)
coverage = self._extract_coverage(manifest)
start_time = self._extract_start_time(manifest)
end_time = self._extract_stop_time(manifest)
id = path.split('/')[-1]
return DataSetMetaInfo(identifier=id,
coverage=coverage,
start_time=start_time,
end_time=end_time,
data_type=DataTypeConstants.S1_SLC)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
h = int(path[-27:-25])
v = int(path[-24:-22])
tile_coverage = get_tile_coverage(h, v).wkt
year = int(path[-36:-32])
doy = int(path[-32:-29])
start_time = get_time_from_year_and_day_of_year(year, doy)
end_time = self._get_end_time(year, doy)
return DataSetMetaInfo(tile_coverage,
start_time.strftime('%Y-%m-%d %H:%M:%S'),
end_time.strftime('%Y-%m-%d %H:%M:%S'),
self.name(), path[path.find('MCD'):])
def query_local(self, query_string: str) -> List[DataSetMetaInfo]:
if self._provided_data_type not in self.get_data_types_from_query_string(query_string):
return []
roi = self.get_roi_from_query_string(query_string)
coverages, referenced_data = self._get_coverages_from_local_meta_info_provider()
coverage = cascaded_union(coverages)
if not roi.within(coverage):
return []
referenced_data = ';'.join(referenced_data)
data_set_meta_info = DataSetMetaInfo(coverage.wkt, None, None, self._provided_data_type,
self._path_to_vrt_file, referenced_data)
return [data_set_meta_info]
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
path_lat_id = path[-14:-12]
path_lat = float(path[-14:-12])
if path_lat_id == 'S':
path_lat *= -1
path_lon_id = path[-12:-11]
path_lon = float(path[-11:-8])
if path_lon_id == 'W':
path_lon *= -1
coverage = Polygon([[path_lon, path_lat], [path_lon, path_lat + 1],
[path_lon + 1, path_lat + 1],
[path_lon + 1, path_lat]])
return DataSetMetaInfo(coverage.wkt, None, None,
DataTypeConstants.ASTER, path)
def test_notify_copied_to_local():
parameters = {'path': TEMP_DIR, 'pattern': '', 'url': EMUS_TEST_URL, 'temp_dir': TEMP_DIR}
file_system = HttpFileSystemAccessor.create_from_parameters(parameters)
path_to_file = './test/test_data/some_file'
try:
open(path_to_file, 'w+')
data_set_meta_info = DataSetMetaInfo('ctfvgb', '2017-09-04', '2017-09-04', 'some_format',
'some_file')
file_system._notify_copied_to_local(data_set_meta_info)
assert not os.path.exists(path_to_file)
finally:
if os.path.exists(path_to_file):
os.remove(path_to_file)
def _query_wrapped_meta_info_provider(self, query_string: str,
local_data_set_meta_infos: List[DataSetMetaInfo]) -> List[DataSetMetaInfo]:
roi = dumps(self.get_roi_from_query_string(query_string))
data_types = self.get_data_types_from_query_string(query_string)
start_time = datetime.strftime(self.get_start_time_from_query_string(query_string), "%Y-%m-%dT%H:%M:%SZ")
end_time = datetime.strftime(self.get_end_time_from_query_string(query_string), "%Y-%m-%dT%H:%M:%SZ")
data_set_meta_infos = []
for data_type in data_types:
if self.provides_data_type(data_type):
run = 0
continue_checking_for_data_sets = True
while continue_checking_for_data_sets:
scihub_query = self._create_scihub_query(roi, data_type, start_time, end_time, run)
run += 1
response = requests.get(scihub_query, auth=(self._username, self._password))
response_xml = XML(response.content)
continue_checking_for_data_sets = False
for child in response_xml:
if child.tag == '{http://www.w3.org/2005/Atom}entry':
data_set_meta_info_id = ""
data_set_meta_info_start_time = ""
data_set_meta_info_end_time = ""
data_set_meta_info_coverage = ""
data_set_meta_info_reference = ""
for child2 in child:
if child2.tag == '{http://www.w3.org/2005/Atom}id':
data_set_meta_info_reference = child2.text
elif child2.tag == '{http://www.w3.org/2005/Atom}title':
data_set_meta_info_id = child2.text
elif child2.tag == '{http://www.w3.org/2005/Atom}date' and 'name' in child2.attrib \
and child2.attrib['name'] == 'beginposition':
data_set_meta_info_start_time = child2.text
elif child2.tag == '{http://www.w3.org/2005/Atom}date' and 'name' in child2.attrib \
and child2.attrib['name'] == 'endposition':
data_set_meta_info_end_time = child2.text
elif child2.tag == '{http://www.w3.org/2005/Atom}str' and 'name' in child2.attrib \
and child2.attrib['name'] == 'footprint':
data_set_meta_info_coverage = child2.text
data_set_meta_info = \
DataSetMetaInfo(data_set_meta_info_coverage, data_set_meta_info_start_time,
data_set_meta_info_end_time, data_type, data_set_meta_info_id,
data_set_meta_info_reference)
if not self._is_provided_locally(data_set_meta_info, local_data_set_meta_infos):
data_set_meta_infos.append(data_set_meta_info)
continue_checking_for_data_sets = True
response.close()
return data_set_meta_infos
def _query_wrapped_meta_info_provider(self, query_string: str, local_data_set_meta_infos: List[DataSetMetaInfo]) -> \
List[DataSetMetaInfo]:
roi = dumps(self.get_roi_from_query_string(query_string))
data_types = self.get_data_types_from_query_string(query_string)
start_time = datetime.strftime(
self.get_start_time_from_query_string(query_string),
"%Y-%m-%dT%H:%M:%SZ")
end_time = datetime.strftime(
self.get_end_time_from_query_string(query_string),
"%Y-%m-%dT%H:%M:%SZ")
data_set_meta_infos = []
for data_type in data_types:
if self.provides_data_type(data_type):
run = 0
continue_checking_for_data_sets = True
while continue_checking_for_data_sets:
mundi_query = _create_mundi_query(roi, data_type,
start_time, end_time,
run)
run += 1
response = requests.get(mundi_query)
response_xml = XML(response.content)
continue_checking_for_data_sets = False
for child in response_xml:
if child.tag == '{http://www.w3.org/2005/Atom}entry':
data_set_meta_info_id = ""
data_set_meta_info_time = ""
data_set_meta_info_coverage = ""
for child2 in child:
if child2.tag == '{http://www.w3.org/2005/Atom}id':
data_set_meta_info_id = child2.text
elif child2.tag == '{http://www.georss.org/georss}polygon':
data_set_meta_info_coverage = _convert_mundi_coverage(
child2.text)
elif child2.tag == '{http://tas/DIAS}sensingStartDate':
data_set_meta_info_time = child2.text
data_set_meta_info = DataSetMetaInfo(
data_set_meta_info_coverage,
data_set_meta_info_time,
data_set_meta_info_time, data_type,
data_set_meta_info_id)
if not self._is_provided_locally(
data_set_meta_info,
local_data_set_meta_infos):
data_set_meta_infos.append(data_set_meta_info)
continue_checking_for_data_sets = True
return data_set_meta_infos
def get(self, data_set_meta_info: DataSetMetaInfo) -> Sequence[FileRef]:
if data_set_meta_info.referenced_data is None:
return []
required_datasets = []
referenced_data_sets = data_set_meta_info.referenced_data.split(';')
for data_set in referenced_data_sets:
# coverage is wrong here. We leave it as it makes no difference.
file_refs = self._file_system.get(DataSetMetaInfo(data_set_meta_info.coverage, None, None,
self._encapsulated_data_type, data_set))
for file_ref in file_refs:
if file_ref.url not in required_datasets:
required_datasets.append(file_ref.url.replace('//', '/'))
vrt_dataset = gdal.BuildVRT(self._path_to_vrt_file, required_datasets)
vrt_dataset.SetMetadataItem('COVERAGE', data_set_meta_info.coverage)
vrt_dataset.FlushCache()
self._set_absolute_sources(required_datasets)
return [FileRef(self._path_to_vrt_file, None, None, get_mime_type(self._path_to_vrt_file))]
def query(self, query_string: str) -> List[DataSetMetaInfo]:
if self._provided_data_type not in self.get_data_types_from_query_string(query_string):
return []
roi = self.get_roi_from_query_string(query_string)
coverages, referenced_data = self._get_coverages_from_local_meta_info_provider()
coverage = cascaded_union(coverages)
if not roi.within(coverage):
additional_coverages, additional_files = self._get_coverages_from_wrapped_meta_info_provider(query_string)
for i in range(len(additional_files)):
if additional_files[i] not in referenced_data:
referenced_data.append(additional_files[i])
coverages.append(additional_coverages[i])
coverage = cascaded_union(coverages)
referenced_data = ';'.join(referenced_data)
data_set_meta_info = DataSetMetaInfo(coverage.wkt, None, None, self._provided_data_type,
self._path_to_vrt_file, referenced_data)
return [data_set_meta_info]
def test_aws_s2_file_system_get_file_ref():
try:
parameters = {'temp_dir': OUTPUT_DIR, 'path': './test/test_data/aws_s2_data/', 'pattern': ''}
aws_s2_file_system = AwsS2FileSystemAccessor.create_from_parameters(parameters)
data_set_meta_info = DataSetMetaInfo('doesnt matter here', '2016-04-01', '2016-04-01',
DataTypeConstants.AWS_S2_L1C,
'30/S/WJ/2016/4/1/0')
metafiles = ['metadata', 'tileInfo']
file_ref = aws_s2_file_system._get_file_ref(data_set_meta_info, bands=[], metafiles=metafiles)
assert '{}/30SWJ,2016-04-01,0/30/S/WJ/2016/4/1/0/'.format(OUTPUT_DIR) == file_ref.url
assert '2016-04-01' == file_ref.start_time
assert '2016-04-01' == file_ref.end_time
assert 'application/x-directory' == file_ref.mime_type
finally:
path = '{}/30SWJ,2016-04-01,0/'.format(OUTPUT_DIR)
if os.path.exists(path):
shutil.rmtree(path)
def test_notify_copied_to_local():
dir_to_be_deleted = '{}/24CBS,2017-10-16,1/'.format(OUTPUT_DIR)
other_dir_to_be_deleted = '{}/24/C/BS/2017/10/16/1/'.format(OUTPUT_DIR)
try:
parameters = {'temp_dir': OUTPUT_DIR, 'path': './test/test_data/aws_s2_data/', 'pattern': ''}
aws_s2_file_system = AwsS2FileSystemAccessor.create_from_parameters(parameters)
if not os.path.exists(dir_to_be_deleted):
os.mkdir(dir_to_be_deleted)
if not os.path.exists(other_dir_to_be_deleted):
os.makedirs(other_dir_to_be_deleted)
data_set_meta_info = DataSetMetaInfo('something', '2017-10-16', '2017-10-16', 'AWS_S2_L1C',
'24/C/BS/2017/10/16/1')
aws_s2_file_system._notify_copied_to_local(data_set_meta_info)
assert not os.path.exists(dir_to_be_deleted)
assert not os.path.exists(other_dir_to_be_deleted)
finally:
if os.path.exists(dir_to_be_deleted):
shutil.rmtree(dir_to_be_deleted)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
id = path.split('/')[-1]
dataset = xarray.open_dataset(path)
if 'lat' in dataset.coords and 'lon' in dataset.coords:
lat_min = dataset.lat.min().values.item(0)
lat_max = dataset.lat.max().values.item(0)
lon_min = dataset.lon.min().values.item(0)
lon_max = dataset.lon.max().values.item(0)
coverage = f'POLYGON(({lon_min} {lat_max}, {lon_max} {lat_max}, {lon_max} {lat_min}, ' \
f'{lon_min} {lat_min}, {lon_min} {lat_max}))'
dataset.close()
start_time = get_time_from_string(
id[17:32]).strftime('%Y-%m-%d %H:%M:%S')
end_time = get_time_from_string(
id[33:48]).strftime('%Y-%m-%d %H:%M:%S')
return DataSetMetaInfo(identifier=id,
coverage=coverage,
start_time=start_time,
end_time=end_time,
data_type=DataTypeConstants.S1_SPECKLED)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
return DataSetMetaInfo(GLOBAL, None, None,
DataTypeConstants.WV_EMULATOR, path)
def _query_wrapped_meta_info_provider(self, query_string: str, local_data_set_meta_infos: List[DataSetMetaInfo]) \
-> List[DataSetMetaInfo]:
requested_data_types = []
query_data_types = self.get_data_types_from_query_string(query_string)
for supported_data_type in self._supported_data_types:
if supported_data_type in query_data_types:
requested_data_types.append(supported_data_type)
if len(requested_data_types) == 0:
return []
roi = self.get_roi_from_query_string(query_string)
tile_coverages = []
for v in range(18):
for h in range(36):
tile_coverage = get_tile_coverage(h, v)
if tile_coverage is not None and tile_coverage.intersects(roi):
tile_coverages.append((h, v, tile_coverage.wkt))
start_time = self.get_start_time_from_query_string(query_string)
if start_time is None:
start_time = get_time_from_string(FIRST_DAY)
end_time = self.get_end_time_from_query_string(query_string)
if end_time is None:
end_time = datetime.datetime.now()
data_set_meta_infos = []
try:
for requested_data_type in requested_data_types:
start_doy = start_time.timetuple().tm_yday
current_time = start_time - datetime.timedelta(
days=(start_doy - _DATA_OFFSETS[requested_data_type]) %
_DATA_INTERVALS[requested_data_type])
while current_time < end_time:
current_time_str = current_time.strftime(
'%Y-%m-%d %H:%M:%S')
current_tile_coverages = []
for h, v, tile_coverage in tile_coverages:
add_to_current = True
for local_data_set_meta_info in local_data_set_meta_infos:
if local_data_set_meta_info.coverage == tile_coverage and \
local_data_set_meta_info.start_time == current_time_str:
add_to_current = False
break
if add_to_current:
current_tile_coverages.append(
(h, v, tile_coverage))
next_time = current_time + datetime.timedelta(
days=_DATA_INTERVALS[requested_data_type])
next_time -= datetime.timedelta(seconds=1)
if len(current_tile_coverages) > 0:
date_dir_url = '{}/{}/{}/{}.{:02d}.{:02d}/'.format(
_BASE_URL, _PLATFORM, requested_data_type,
current_time.year, current_time.month,
current_time.day)
date_page = urllib2.urlopen(
date_dir_url).read().decode('utf-8')
for h, v, tile_coverage in current_tile_coverages:
file_regex = '.hdf">{}.A{}{:03d}.h{:02d}v{:02d}.006.*.hdf'. \
format(requested_data_type.split('.')[0], current_time.year,
current_time.timetuple().tm_yday, h, v)
available_files = re.findall(file_regex, date_page)
for file in available_files:
current_time_str = current_time.strftime(
'%Y-%m-%d %H:%M:%S')
logging.info('Found {} data set for {}'.format(
requested_data_type, current_time_str))
data_set_meta_infos.append(
DataSetMetaInfo(
tile_coverage, current_time_str,
next_time.strftime(
'%Y-%m-%d %H:%M:%S'),
requested_data_type, file[6:]))
current_time = next_time + datetime.timedelta(seconds=1)
except URLError as e:
logging.warning(
'Could not access NASA Land Processes Distributed Active Archive Center: {}'
.format(e.reason))
return data_set_meta_infos
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
relative_path = get_relative_path(path, DataTypeConstants.CAMS_TIFF)
return DataSetMetaInfo(GLOBAL, relative_path.replace('_', '-'),
relative_path.replace('_', '-'),
DataTypeConstants.CAMS_TIFF, relative_path)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
return DataSetMetaInfo(GLOBAL, path[-13:-3], path[-13:-3],
DataTypeConstants.CAMS, path)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
coverage = self._extract_coverage(path)
start_time = self._extract_start_time(path)
end_time = self._extract_end_time(path)
return DataSetMetaInfo(coverage, start_time, end_time, self.name(),
path)
def extract_meta_info(self, path: str) -> DataSetMetaInfo:
coverage = self._extract_coverage(path)
time = self._extract_time_from_metadata_file(path)
return DataSetMetaInfo(coverage, time, time, self.name(), path)
