def main(build, chromosome, pos1, pos2, tolerant=0):
"""
Get extended transcript information and print this to standard output.
"""
service = Client(WSDL_LOCATION, cache=None).service
result = service.getTranscriptsMapping(build, chromosome, int(pos1),
int(pos2), int(tolerant))
if result:
for t in result.TranscriptMappingInfo:
print """Transcript: %s
Version: %s
Gene: %s
Protein: %s
Orientation: %s
Start: %s
Stop: %s
CDS start: %s
CDS stop: %s""" % \
(t.name, t.version, t.gene, t.protein, t.orientation,
t.start, t.stop, t.cds_start, t.cds_stop)
if __name__ == '__main__':
if len(sys.argv) < 5:
print format_usage()
sys.exit(1)
main(*sys.argv[1:])
monkey_patch_suds()
import sys
from suds.client import Client
from mutalyzer.util import format_usage
WSDL_LOCATION = 'http://127.0.0.1:8081/?wsdl'
def main(description):
"""
Run the Mutalyzer syntaxchecker and print results to standard output.
"""
service = Client(WSDL_LOCATION, cache=None).service
result = service.checkSyntax(description)
if result.valid:
print 'Syntax OK!'
else:
print 'Syntax NOT OK:'
for message in result.messages.SoapMessage:
print message.message
if __name__ == '__main__':
if len(sys.argv) < 2:
print format_usage()
sys.exit(1)
main(sys.argv[1])
