def main():
if len(sys.argv) < 3:
print("usage: merge-mat.py mat_1[,mat_2..] out_mat\n\n"
"Merge multiple files with blockades into one")
return 1
blockades = []
for mat_file in sys.argv[1:-1]:
blockades.extend(read_mat(mat_file))
write_mat(blockades, sys.argv[-1])
return 0
def main():
if len(sys.argv) != 3:
print("usage: protein-label.py mat_file prot_sequence\n\n"
"Add protein sequence record into the mat file "
"with blockades", file=sys.stderr)
return 1
blockades = read_mat(sys.argv[1])
for blockade in blockades:
blockade.peptide = sys.argv[2]
write_mat(blockades, sys.argv[1])
return 0
def main():
if len(sys.argv) < 3:
print("usage: merge-mat.py mat_1[,mat_2..] out_mat\n\n"
"Merge multiple files with blockades into one")
return 1
blockades = []
for mat_file in sys.argv[1:-1]:
blockades.extend(read_mat(mat_file))
write_mat(blockades, sys.argv[-1])
return 0
def main():
if len(sys.argv) != 4:
print("usage: flip-blockades.py blockades_in model_file flipped_out\n\n"
"Orients blockade signals according to the AA order "
"in the protein of origin")
return 1
blockades_in = sys.argv[1]
blockades_out = sys.argv[3]
svr_file = sys.argv[2]
blockades = read_mat(blockades_in)
rev_blockades = flip(blockades, svr_file)
write_mat(rev_blockades, blockades_out)
return 0
