def import_external_fasta(input_file):
"""
Create a FastaGenome object, set its metadata, and populate it with the
data from a fasta file.
Must return the data as the single item in an array, because other file
formats potentially contain several genomes.
"""
from nasp.nasp_objects import FastaGenome
genome = FastaGenome()
set_genome_metadata(genome, input_file)
genome.import_fasta_file(genome.file_path(), "franken::")
# from sys import stdout
#genome._genome._send_to_fasta_handle( stdout )
return [genome]
def import_external_fasta(input_file):
"""
Create a FastaGenome object, set its metadata, and populate it with the
data from a fasta file.
Must return the data as the single item in an array, because other file
formats potentially contain several genomes.
"""
from nasp.nasp_objects import FastaGenome
genome = FastaGenome()
set_genome_metadata(genome, input_file)
genome.import_fasta_file(genome.file_path(), "franken::")
# from sys import stdout
#genome._genome._send_to_fasta_handle( stdout )
return [genome]
